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1.
分析东方田鼠分离汉坦病毒ZT10株M基因分子特征。提取汉坦病毒ZT10株感染细胞的总RNA,应用逆转录聚合酶链反应(RT-PCR)扩增ZT10株M片段全基因,克隆于T载体并测序,对其进行序列分析。结果显示汉坦病毒ZT10株的基因组M片段长度为3651个核苷酸,编码1133个氨基酸。序列分析表明其为Seoul型汉坦病毒。与八株Seoul型汉坦病毒的M片段同源性为84.0%~96.3%,而与HTN型汉坦病毒的同源性则较低,与从田鼠分离的汉坦病毒(ProspectHillvirus,Tulavirus,Khabarovskvirus,Islavistavirus)核苷酸同源性仅为57.5%~60.9%,且与浙江省Seoul型分离株Guo3同源性较低,表明浙江省可能存在着另一Seoul亚型的汉坦病毒。  相似文献   

2.
分析东方田鼠分离汉坦病毒ZT10株M基因分子特征.提取汉坦病毒ZT10株感染细胞的总RNA,应用逆转录聚合酶链反应(RT-PCR)扩增ZT10株M片段全基因,克隆于T载体并测序,对其进行序列分析.结果显示汉坦病毒ZT10株的基因组M片段长度为3651个核苷酸,编码1133个氨基酸.序列分析表明其为Seoul型汉坦病毒.与八株Seoul型汉坦病毒的M片段同源性为84.0%~96.3%,而与HTN型汉坦病毒的同源性则较低,与从田鼠分离的汉坦病毒(Prospect Hill virus, Tula virus, Khabarovsk virus, Isla vista virus)核苷酸同源性仅为57.5%~60.9%,且与浙江省Seoul型分离株Guo3同源性较低,表明浙江省可能存在着另一Seoul亚型的汉坦病毒.  相似文献   

3.
为了分析浙江省汉坦病毒分子流行病学的特点,本文应用分子生物学软件对1981~2007年从浙江省不同地区不同宿主分离的12株汉坦病毒的S、M基因序列进行分子进化分析,结果显示:浙江省属汉滩(HTN)型和汉城(SEO)型的混合型疫区,病毒的基因差异和亲缘远近关系主要表现在地区性,而与病毒分离的年代与宿主关系并不大,表现出明显的地理聚集现象,该现象在HTNV中的表现尤为明显,同一地区分离的病毒表现为较高的基因同源性,系统进化树上分布于同一或临近分支。另外发现分离自浙江省建德地区的Gou3和ZJ5株在SEOV进化枝中构成一独立分支,而且与国内外SEOV其他毒株的基因差异均较大,在浙江省建德地区存在着SOEV的特殊亚型病毒。  相似文献   

4.
汉坦病毒汉滩型特殊新亚型的发现   总被引:13,自引:0,他引:13  
应用RT-PCR扩增了皖南山区分离株AH09的M和S片段全基因,克隆于T载体,纯化后测定序列。结果AH09株M片段的全基因序列共3625个核苷酸,编码1135个氨基酸;S片段的全基因序列共1724个核苷酸,编码430个氨基酸。M和S片段全基因核苷酸和氨基酸与汉坦病毒各型株的代表株和HTN型毒株的同源性比较表明,AH09株分枝与HTN型接近,与其它各型病毒则相距较远,故确定为HTN型毒株,但AH09株与HTN型毒株的M和S片段全基因序列有差异,其差异分别高达23.6%和20.4%,经种系发生分析,AH09株是迄今为止所发现的HTN型病毒中差异最大的新基因亚型病毒株,AH09株病毒M片段的氨基酸与HTN型相差13.5%至14.8%,而S片段仅相差7%-8.1%,说明AH09毒株的变异主要发生在M片段。而ORF和3‘端的NCR区核苷酸序列分析比较说明,病毒的变异更主要集中在该片段的3‘端的NCR区。  相似文献   

5.
为了解长白县黑线姬鼠中汉坦病毒流行情况及病毒型别,采用巢式RT-PCR方法筛查鼠肺RNA,并对PCR阳性样本进行全S基因的扩增、克隆及测序;构建系统发生树并进行分子进化分析。结果显示:共捕获黑线姬鼠58只,共检测出4份阳性标本,阳性率6.90%。经过序列测定及进化分析显示黑线姬鼠所携带的病毒与汉滩病毒第6基因亚型标准株核苷酸的同源性为95.8%~96.3%,氨基酸同源性为98.6%~99.5%。同时发现,长白县黑线姬鼠携带的汉滩病毒的NP蛋白共有1个特异性氨基酸位点为S387。  相似文献   

6.
为掌握云南省德宏州芒市和瑞丽市蚊媒病毒分布状况,2010年8月用诱蚊灯采集蚊虫17种2 149只,用金黄地鼠肾细胞(Baby hamster kidney cell,BHK-21)培养法分离病毒,阳性分离物用阿卡斑病毒(Akabane virus,AKV)S和M片段特异性引物的RT-PCR法鉴定。从采集蚊虫中分离到能引起BHK-21细胞病变和致乳小白鼠发病死亡的2株病毒,其中DHL10M110株分离自瑞丽市迷糊按蚊(Anopheles vagas),DHL10M117株分离自芒市三带喙库蚊(Culex tritaeniorhynchus)。RT-PCR扩增获得S片段的702bp序列和M片段的456bp序列,系统进化树分析表明DHL10M110和DHL10M117株与肯尼亚和澳大利亚AKV分离株进化关系较远;与日本、韩国和中国台湾的AKV分离株亲缘关系较近,但云南株形成一个独立的小分支。2株新分离病毒的S片段与中国台湾CY-77株的核苷酸(96.6%和96.7%)和氨基酸(99.6%和100%)同源性最高;M片段与日本Iriki株的核苷酸同源性最高(93.2%和93.6%),与中国台湾CY-77株氨基酸同源性最高(99.6%和100%);与肯尼亚MP496株核苷酸(69.7%和70.0%)和氨基酸(91.0%)同源性最低。本研究证实云南省德宏州存在AKV的流行,与亚洲流行株具有较近的亲缘关系。三带喙库蚊和迷糊按蚊可传播该病毒。  相似文献   

7.
根据我国流行的2型肾综合征出血热病毒(HFRSV)代表毒株汉滩型(HTNV)76-118株和汉城型(SEOV)R_(22)株M节段的核苷酸序列,设计2型共同引物,建立了逆转录-聚合酶链反  相似文献   

8.
肾综合征出血热疫苗候选毒株A16株的分子特性   总被引:2,自引:0,他引:2  
为研究肾综合征出血热疫苗候选毒株A16株的分子基础,应用RT-PCR方法扩增并测定了A16株的M和S片段的序列,结果A16株M片段的全基因序列共3 615个核苷酸,编码1 133个氨基酸.S片段的全基因序列共1770个核苷酸,编码429个氨基酸.A16株M片段核苷酸全基因序列及其推导的氨基酸与HTN型毒株同源率为75.5%~90.3%和85.9%~97.1%,即A16与HTN同型毒株间的差异高达9.7%~24.3%和2.9%~14.1%,而与SEO型的同源率比较,核苷酸和氨基酸分别仅为70.2%~70.8%和73.4%~76.7%.S片段的序列同源率与M片段的结果相类似,即核苷酸和氨基酸的同源率与HTN型毒株分别为76.0%~90%和92.1%~97.7%,与SEO型为67.0%~67.7%和81.7%~82.6%.结果显示,A16株虽然属于HTN型,但该毒株为HTN型病毒的新亚型病毒株.  相似文献   

9.
采用RT-PCR和TAIL-PCR方法,首次对我国分离的巴泰病毒(YN92-4株)基因组的全编码区进行序列测定和分析。结果显示,YN92-4株病毒基因组由S、M、L三个片段组成,长度分别为947、4 371、6 860个核苷酸。其中,S片段基因编码由234个氨基酸残基组成的核衣壳蛋白和由102个氨基酸残基组成的非结构蛋白,M片段基因编码由1 435个氨基酸残基组成的前体蛋白,L片段基因编码由2 239个氨基酸残基组成的RNA聚合酶。与国外其它地区的巴泰病毒分离株进行基因组全编码区序列比较后发现,YN92-4株与日本牛血清分离株(ON-7/B/01株)在S、M片段核苷酸(氨基酸)的同源性最高,分别为97.7%(100%)和95.7%(98%);由于本研究首次开展对巴泰病毒L基因片段核苷酸序列的研究,因此国际基因库尚无可参考的序列信息,本研究比较了我国分离的巴泰病毒与同一血清组的代表病毒Bunyamwera病毒L片段的核苷酸和氨基酸序列同源性,分别为73.5%和81.6%。系统进化分析显示,YN92-4株基因组与其它巴泰病毒分离株在各自分支下形成独立分支。本研究提示我国分离的巴泰病毒YN92-4株未发生基因重配(...  相似文献   

10.
2008年至2009年间,在湖南和湖北两省的活禽市场中分离到了14株H6亚型禽流感病毒,为了解这14株病毒之间的分子特征和差异,我们运用PCR和测序鉴定对这14株病毒的NA基因进行了分型,并对其表面基因HA和NA进行序列测定及序列分析.14株H6亚型病毒中,H6N2亚型12株,H6N6亚型2株.序列测定和进化分析结果显示:DK/HN/284的HA基因与其它13株的HA差异性较大,差异性达到19.4%~20.2%,其余13株毒同源性在94.2%~99.9%;N2亚型NA基因的同源性在91.1%~99.9%,差异性比较大;两株N6亚型NA基因同源性为89.5%,差异明显.这些数据表明:不同毒株呈现一定的地域性差异.与我国周边其它地区的H6亚型禽流感毒株序列进行比较发现,只有DK/HN/284的HA基因与香港早期的毒株可能有着共同的来源,其余都与香港和韩国等的毒株有着较大的差异性,并且各个毒株的HA基因上潜在的糖基化位点和受体结合位点也有所不同,这些数据表明,这些毒株表现出明显的异源性.  相似文献   

11.
Four hantaviruses-Hantaan virus (HTNV), Seoul virus (SEOV), Dobrava virus (DOBV) and Puumala virus-are known to cause hemorrhagic fever with renal syndrome (HFRS) in Europe and Asia. HTNV causes the most severe form of HFRS (5 to 15% case-fatality rate) and afflicts tens of thousands of people annually. Previously, we demonstrated that DNA vaccination with a plasmid expressing the SEOV M gene elicited neutralizing antibodies and protected hamsters against infection with SEOV and HTNV. Here, we report the construction and evaluation of a DNA vaccine that expresses the HTNV M gene products, G1 and G2. DNA vaccination of hamsters with the HTNV M gene conferred sterile protection against infection with HTNV, SEOV, and DOBV. DNA vaccination of rhesus monkeys with either the SEOV or HTNV M gene elicited high levels of neutralizing antibodies. These are the first immunogenicity data for hantavirus DNA vaccines in nonhuman primates. Because a neutralizing antibody response is considered a surrogate marker for protective immunity in humans, our protection data in hamsters combined with the immunogenicity data in monkeys suggest that hantavirus M gene-based DNA vaccines could protect humans against the most severe forms of HFRS.  相似文献   

12.
13.
谭树华  王桂忠  李少菁 《生态学报》2009,29(12):6805-6810
对中国东南沿海4个日本囊对虾地理群体16S rRNA基因片段进行了序列测定和分析.在获得的467bp 序列中,共检测到45个变异位点,多态位点比例为9.64%.具有10种单倍型,三亚群体单倍型多样性最高(0.900±0.161).各群体的核苷酸多样性(π)为0.0007~0.0082,其中三亚群体核苷酸多样性最为丰富,远高于湛江、北海和海口群体.群体间遗传分化指数(F_(st))为0.000~0.945.结合已报道的16S rRNA基因序列,构建了NJ分子系统树,中国海域日本囊对虾可分为3支.香港至台湾沿岸所有单倍型聚集为一分支,湛江、海口和北海群体内的所有单倍型聚集成另一分支,两分支分别属于已报道的变种Ⅰ和变种Ⅱ,但三亚群体内的4个单倍型单独聚集成一分支,与前两分支的核苷酸序列差异大(7.95%~8.35%),遗传分化明显,可能为一亲缘关系很远的新种(或变种).研究结果可为日本囊对虾的资源管理和遗传选育提供参考.  相似文献   

14.
建立准确、快速、灵敏的汉坦病毒基因分型方法,可弥补传统血清学方法的不足,对防治该病毒所致的肾综合征出血热(HFRS)具有重要意义。本试验采用逆转录-聚合酶反应(RT-PCR)和限制性片段长度多态性(RFLP)和限制性片段长度多态性(RFLP)方法,对流行于我国的两型汉坦病毒代表株??汉滩型(HTNV)76-118和汉城型(SEOV)R22株进行基因分析。根据病毒DNA序列的电脑软件分析,不同HFRSV囊膜糖蛋白编码基因M节段1199~1497间核苷酸序列上RsaI、TaqI和HindIII的酶切位点存在差异(Fig.1), 可用于进行限制性内切酶基因多态性分析,以确定HFRV的型别。首先,以一对引物扩增该片段(Fig.2)。然后,分别用这三种内切酶(Fig.3,4,5)进行酶切分型。共分析了从我国不同地区,不同宿主分离的毒株18株,及国际标准毒株2株,酶切图谱显示,这些毒株可以被分为三组(Table.1):9株可定为HTNV型,8株可定为SEOV型,3株无法确定其型别(X型)。该法分型结果与血清学经典的空斑减数中和试验分型结果基本一致,说明该酶切分型方法具有一定的可行性。  相似文献   

15.
Nucleotide sequences were determined for the complete S genome segments of the six distinct hantavirus genotypes from Argentina and for two cell culture-isolated Andes virus strains from Chile. Phylogenetic analysis indicates that, although divergent from each other, all Argentinian hantavirus genotypes group together and form a novel phylogenetic clade with the Andes virus. The previously characterized South American hantaviruses Laguna Negra virus and Rio Mamore virus make up another clade that originates from the same ancestral node as the Argentinian/Chilean viruses. Within the clade of Argentinian/Chilean viruses, three subclades can be defined, although the branching order is somewhat obscure. These are made of (i) "Lechiguanas-like" virus genotypes, (ii) Maciel virus and Pergamino virus genotypes, and (iii) strains of the Andes virus. Two hantavirus genotypes from Brazil, Araraquara and Castello dos Sonhos, were found to group with Maciel virus and Andes virus, respectively. The nucleocapsid protein amino acid sequence variability among the members of the Argentinian/Chilean clade does not exceed 5.8%. It is especially low (3.5%) among oryzomyine species-associated virus genotypes, suggesting recent divergence from the common ancestor. Interestingly, the Maciel and Pergamino viruses fit well with the rest of the clade although their hosts are akodontine rodents. Taken together, these data suggest that under conditions in which potential hosts display a high level of genetic diversity and are sympatric, host switching may play a prominent role in establishing hantavirus genetic diversity. However, cospeciation still remains the dominant factor in the evolution of hantaviruses.  相似文献   

16.
Azuma N  Yamazaki T  Chiba S 《Genetica》2011,139(11-12):1399-1408
We investigated mitochondrial and nuclear DNA genotypes in nominal Littorina sitkana samples from 2 localities in Eastern Hokkaido, northern Japan. Our results indicated the existence of cryptic species. In the analysis of partial mitochondrial Cytchrome b gene sequences, haplotypes of L. sitkana samples were monophyletic in a phylogenetic tree with orthologous sequences from other Littorina species, but were apparently separated in 2 clades. One included typical L. sitkana (CBa clade) samples, which formed a clade with an allopatric species, L. horikawai. The other, CBb, was independent from CBa and L. horikawai. Haplotypes of the mitochondrial 16S rRNA gene also separated into 2 clades. We additionally examined intron sequence of the heat shock cognate 70 (HSC70) nuclear gene and identified 17 haplotypes. These were also separated into 2 clades, HSCa and HSCb. Among the examined Hokkaido samples, 60% of individuals were heterozygotes. However, each heterozygote consisted of haplotypes from the same clade, HSCa or HSCb, and no admixture of HSCa and HSCb haplotypes was observed. These results indicate reproductive isolation between the 2 clades. Among the genotyped Hokkaido samples, 93% of individuals had CBa?+?HSCa or CBb?+?HSCb genotypes, and 7% had CBb?+?HSCa genotypes. The discrepancy between the mtDNA and nuclear DNA haplotypes in a few individuals may have been caused by genetic introgression due to past hybridization.  相似文献   

17.
The aim of the present study was to evaluate the clinical usefulness of applying RT-nested PCR along with RFLP as a method for diagnosis and genotypic differentiation of Hantavirus in the acute-stage sera of HFRS patients as compared to the ELISA technique. A prospective study of patients with suspected HFRS patients was carried out. Sera were collected for serological evaluation by ELISA and RT-nested PCR testing. Primers were selected from the published sequence of the S segment of HTNV strain 76-118 and SEOV strain SR-11, which made it possible to obtain an amplicon of 403 bp by RT-nested PCR. The genotypic differentiations of the RT-nested PCR amplicons were carried out by RFLP. Sequence analyses of the amplicons were used to confirm the accuracy of the results obtained by RFLP. Of the 48 acute-stage sera from suspected HFRS patients, 35 were ELISA-positive while 41 were positive by RT-nested PCR. With Hind III and Hinf I, RFLP profiles of the RT-nested PCR amplicons of the 41 positive sera exhibited two patterns. 33 had RFLP profiles similar to the reference strain R22, and thus belonged to the SEOV type. The other 8 samples which were collected during October–December had RFLP profiles similar to the reference strain 76-118, and thus belonged to the HTNV type. Sequence phylogenetic analysis of RT-nested PCR amplicons revealed sdp1, sdp2 YXL-2008, and sdp3 as close relatives of HTNV strain 76-118, while sdp22 and sdp37 as close relatives of SEOV strain Z37 and strain R22 located in two separate clusters in the phylogenetic tree. These results were identical to those acquired by RFLP. RT-nested PCR integrated with RFLP was a rapid, simple, accurate method for detecting and differentiating the genotypes of Hantavirus in the acute-stage sera of suspected HFRS patients. In Shandong province, the main genotypes of Hantavirus belonged to the SEOV types, while the HTNV types were observed during the autumn–winter season.  相似文献   

18.
Ning  Tingting  Wang  Ling  Liu  Shuo  Ma  Jian  Nie  Jianhui  Huang  Weijin  Li  Xuguang  Li  Yuhua  Wang  Youchun 《中国病毒学》2021,36(1):104-112
The Hantaan virus(HTNV) and Seoul virus(SEOV) mutants have accumulated over time. It is important to determine whether their neutralizing epitopes have evolved, thereby making the current vaccine powerless. However, it is impossible to determine by using traditional plaque reduction neutralization test(PRNT), because it requires large numbers of live mutant strains. Pseudovirus-based neutralization assays(PBNA) were developed by employing vesicular stomatitis virus(VSV) backbone incorporated with HTNV or SEOV glycoproteins(VSVDG*-HTNVG or VSVDG*-SEOVG). 56 and 51 single amino acid substitutions of glycoprotein(GP) in HTNV and SEOV were selected and introduced into the reference plasmid. Then the mutant pseudoviruses were generated and tested by PBNA. The PBNA results were highly correlated with PRNT ones with R2 being 0.91 for VSVDG*-HTNVG and 0.82 for VSVDG*-SEOVG. 53 HTNV mutant pseudoviruses and 46 SEOV mutants were successfully generated. Importantly, by using PBNA, we found that HTNV or SEOV immunized antisera could neutralize all the corresponding 53 HTNV mutants or the 46 SEOV mutants respectively. The novel PBNA enables us to closely monitor the effectiveness of vaccines against large numbers of evolving HTNV and SEOV. And the current vaccine remains to be effective for the naturally occurring mutants.  相似文献   

19.
In order to detect serum antibodies against clinically important Old and New World hantaviruses simultaneously, multiparametric indirect immunofluorescence assays (IFAs) based on biochip mosaics were developed. Each of the mosaic substrates consisted of cells infected with one of the virus types Hantaan (HTNV), Puumala (PUUV), Seoul (SEOV), Saaremaa (SAAV), Dobrava (DOBV), Sin Nombre (SNV) or Andes (ANDV). For assay evaluation, serum IgG and IgM antibodies were analyzed using 184 laboratory-confirmed hantavirus-positive sera collected at six diagnostic centers from patients actively or previously infected with the following hantavirus serotypes: PUUV (Finland, n = 97); SEOV (China, n = 5); DOBV (Romania, n = 7); SNV (Canada, n = 23); ANDV (Argentina and Chile, n = 52). The control panel comprised 89 sera from healthy blood donors. According to the reference tests, all 184 patient samples were seropositive for hantavirus-specific IgG (n = 177; 96%) and/or IgM (n = 131; 72%), while all control samples were tested negative. In the multiparametric IFA applied in this study, 183 (99%) of the patient sera were IgG and 131 (71%) IgM positive (accordance with the reference tests: IgG, 96%; IgM, 93%). Overall IFA sensitivity for combined IgG and IgM analysis amounted to 100% for all serotypes, except for SNV (96%). Of the 89 control sera, 2 (2%) showed IgG reactivity against the HTNV substrate, but not against any other hantavirus. Due to the high cross-reactivity of hantaviral nucleocapsid proteins, endpoint titrations were conducted, allowing serotype determination in >90% of PUUV- and ANDV-infected patients. Thus, multiparametric IFA enables highly sensitive and specific serological diagnosis of hantavirus infections and can be used to differentiate PUUV and ANDV infection from infections with Murinae-borne hantaviruses (e.g. DOBV and SEOV).  相似文献   

20.
Despite great efforts to control the infection of poultry with H5N1 viruses, these pathogens continue to evolve and spread in nature, threatening public health. Elucidating the characteristics of H5N1 avian influenza virus will benefit disease control and pandemic preparation. Here, we sequenced the genomes of 15 H5N1 avian influenza viruses isolated in Vietnam in 2006 and 2007 and performed phylogenetic analyses to compare these sequences with those of other viruses available in the public databases. Molecular characterization of the H5N1 viruses revealed that seven genetically distinct clades of H5N1 viruses have appeared in Vietnam. Clade 2.3.4 viruses existed in Vietnam as early as 2005. Fifteen viruses isolated during 2006 and 2007 belonged to clade 1 and clade 2.3.4, and were divided into five genotypes. Reassortants between the clade 1 and clade 2.3.4 viruses were detected in both North and South Vietnam. We also assessed the replication and pathogenicity of these viruses in mice and found that these isolates replicated efficiently and exhibited distinct virulence in mice. Our results provide important information regarding the diversity of H5N1 viruses in nature.  相似文献   

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