Microsatellite markers reveal high genetic diversity in date palm (<Emphasis Type="Italic">Phoenix dactylifera</Emphasis> L.) germplasm from Sudan

Genetic diversity in date palm germplasm from Sudan representing 37 female and 23 male accessions was investigated using 16 loci of microsatellite (SSR) primers. Eight female accessions from Morocco were included as reference material. The tested SSR markers showed a high level of polymorphism. A total of 343 alleles were detected at the 16 loci. The number of alleles per marker ranged from 14 to 44 with an average of 21.4 per locus. A high level of expected heterozygosity was observed among Sudan cultivars (0.841), Morocco cultivars (0.820) and male accessions (0.799). The results indicate that the genetic groups of the Sudan cultivars and/or males do not follow a clear geographic pattern. However, the morocco group showed significant differentiation in relation to the Sudan groups, as measured by F (ST) values and genetic distances. The effect of the methods of pollination and cultivar selection on the genetic structure was clearly detected by the weak clustering association that was observed for the majority of accessions originating from Sudan and Morocco as well. This suggests the need for further investigation on the genetic diversity of Sudanese date palm germplasm. A deeper insight will be revealed by a detailed analysis of populations originating from different geographic locations.     

Monitoring of cultivar identity in tissue culture-derived date palms using RAPD and AFLP analysis

In the present study, two polymerase chain reaction (PCR)-based methods namely, randomly amplified polymophic DNA (RAPD) and amplification fragment length polymorphism (AFLP) were employed to assess genetic variations, which may appeared, in tissue culture-derived date palm (Phoenix dactylifera) offshoots. Analysis of RAPD banding patterns generated by PCR amplification using 37 random primers gave no evidences for somaclonal variations and the percentage of polymorphic bands in a total of 259 scored bands was zero. Meanwhile, analysis of AFLP banding patterns generated using 13 primer combinations pointed to minor genetic variations in the AFLP banding patterns. The percentage of genetic variations (polymorphism) in tissue culture-derived date palm offshoots belonging to cultivars Sakkoty, Gandila and Bertamoda was 2.6, 0.79 and 1 %, respectively, as revealed by AFLP analysis. The low percentage of genetic variations confirms the genetic stability of tissue culture-derived dry date palm cultivars.     

LEAF ISOZYMES AS GENETIC MARKERS IN DATE PALMS

The date palm (Phoenix dactylifera L.) is a long-lived, dioecious, arborescent monocotyledon which must be propagated vegetatively by offshoots to maintain clones. An extensive breeding program begun in 1948 at Indio, California, to obtain superior lines has resulted in the production of several seedling populations of known parents. These were used to study the genetic control of isozymes of alcohol dehydrogenase, esterase, glutamate oxaloacetate transaminase, phosphoglucose isomerase and phosphoglucose mutase from leaf tissue. The five enzyme systems are specified by seven polymorphic genes with 14 alleles. Additional polymorphism was found in two other species of Phoenix. Twenty-six female and 20 male date palm cvs. were genotyped to provide, insofar as is known, the first single-gene markers for the date palm and perhaps for any arborescent monocotyledon.     

Development of male-specific SCAR marker in date palm (Phoenix dactylifera L.)

Genetics of control mechanisms that underlies sex differentiation in date palm is not known. Sex of the plants becomes known only at the time of first flowering, which takes around 5 years. In comparison, molecular diagnosis (if available/feasible) promises quick and reliable identification of sex types very early when plantlets are growing in seedbeds. To develop such an assay, genomic DNA from 45 individual plants (25 female and 20 male) belonging to different varieties of date palm was subjected to PCR amplification using 100 random amplified polymorphic DNA (RAPD) and 104 intersimple sequence repeat (ISSR) primers. Initially, two bulk genomic DNA samples (each made by pooling DNA from ten male and female plants, separately) were used. A primer showing sex-specific band in bulked samples was further used for amplification of the genomic DNA of the individual samples of that bulk. Only one RAPD primer, OPA-02, amplified a fragment of ~1.0 kb in all the individual samples of male genotypes, whereas this fragment was absent in all the female genotypes. This male-specific fragment was cloned and sequenced (GenBank accession no. JN123357), and a sequence-characterized amplified region (SCAR) primer pair was designed that amplified a 406-bp fragment in both female and male genotypes and a unique fragment of 354 bp in only male genotypes. The SCAR marker was further validated using 25 female and ten male date palm plants belonging to different varieties collected from different locations.     

Characterization of ten date palm (Phoenix dactylifera L.) cultivars from Saudi Arabia using AFLP and ISSR markers

Date palm is the most economically important plant in the Middle East due to its nutritionally valuable fruit. The development of accurate DNA fingerprints to characterize cultivars and the detection of genetic diversity are of great value for breeding programs. The present study explores the usefulness of ISSR and AFLP molecular markers to detect relationships among 10 date palm (Phoenix dactylifera L.) cultivars from Saudi Arabia. Thirteen ISSR primers and six AFLP primer combinations were examined. The level of polymorphism among cultivars for ISSRs ranged from 20% to 100% with an average of 85%. Polymorphism levels for AFLPs ranged from 63% to 84% with an average of 76%. The total number of cultivar-specific markers was 241, 208 of which were generated from AFLP analysis. AJWA cultivar had the highest number of cultivar-specific ISSR markers, whereas DEK, PER, SUK-Q, SHA and MOS-H cultivars had the lowest. RAB and SHA cultivars had the most and least AFLP cultivar-specific markers, respectively. The highest pairwise similarity indices for ISSRs, AFLPs and combined markers were 84% between DEK (female) and PER (female), 81% between SUK-Q (male) and RAB (male), and 80% between SUK-Q (male) and RAB (male), respectively. The lowest similarity indices were 65% between TAB (female) and SUK-Q (male), 67% between SUK-A (female) and SUK-Q (male), and 67% between SUK-A (female) and SUK-Q (male). Cultivars of the same sex had higher pairwise similarities than those between cultivars of different sex. The Neighbor-Joining (NJ) tree generated from the ISSR dataset was not well resolved and bootstrap support for resolved nodes in the tree was low. AFLP and combined data generated completely resolved trees with high levels of bootstrap support. In conclusion, AFLP and ISSR approaches enabled discrimination among 10 date palm cultivars of from Saudi Arabia, which will provide valuable information for future improvement of this important crop.     

De novo genome sequencing and comparative genomics of date palm (Phoenix dactylifera)

Date palm is one of the most economically important woody crops cultivated in the Middle East and North Africa and is a good candidate for improving agricultural yields in arid environments. Nonetheless, long generation times (5-8 years) and dioecy (separate male and female trees) have complicated its cultivation and genetic analysis. To address these issues, we assembled a draft genome for a Khalas variety female date palm, the first publicly available resource of its type for a member of the order Arecales. The ～380 Mb sequence, spanning mainly gene-rich regions, includes >25,000 gene models and is predicted to cover ～90% of genes and ～60% of the genome. Sequencing of eight other cultivars, including females of the Deglet Noor and Medjool varieties and their backcrossed males, identified >3.5 million polymorphic sites, including >10,000 genic copy number variations. A small subset of these polymorphisms can distinguish multiple varieties. We identified a region of the genome linked to gender and found evidence that date palm employs an XY system of gender inheritance.     

Sperm limitation and genetic effects on fecundity in the dioeciousliverwort Sphaerocarpos texanus

Spatial relationship, male size and genetic interaction were manipulated to determine their effects on fecundity variation in the dioecious ephemeral liverwortSphaerocarpos texanus Aust. Genetically identical male individuals and genetically identical female individuals were used within inter-mate distance and male size experiments. Thus, any treatment effects within these experiments cannot be attributed to genetic effects. For the genetic interaction experiment, three males and three females were mated in a factorial design resulting in nine unique crosses. Each of these nine crosses was replicated eight times. In addition, 182 pairs (13 males and 14 females) were crossed to detect general trends across many pairings. I found that both increasing inter-mate distance and decreasing male size reduce sporophyte production, thus suggesting sperm limitation. One of the nine pairs had very low levels of sporophyte production. The male and female individuals involved in this pairing did not have lower fecundity levels when their successful coatings were compared with the other two individuals of similar sex. Of the 182 pairs, 13 were not fecund. This fecundity pattern must have an underlying genetic mechanism since the individuals involved were fecund in other crosses. This novel result provides evidence that genetic interactions may contribute to the low levels of sexual reproduction observed among dioecious bryophytes.     

配偶选择中“听众效应”及鸣唱对雌性灰文鸟行为的影响

配偶选择是性选择研究核心问题之一。雌性通过选择高质量的雄性配偶获得直接利益,如资源、营养和保护等,也可以通过获得高质量雄性提高后代的适合度。配偶选择研究对于研究性选择机制和进化均具有重要意义。目前,对配偶选择的研究主要集中在影响配偶选择的因素及雌性"听众效应"中雄性-雄性竞争方面。鸣唱对配偶选择的影响和雄性"听众效应"中雌性-雌性竞争的研究对于探索鸟类配偶选择中信号交流、调整的方式及选择策略均具有重要意义。以灰文鸟为对象,研究了雄性鸣唱对雌性配偶选择的影响及雄性"听众效应"对雌性灰文鸟同性竞争行为的影响进行了探讨。实验一利用双向选择装置,以配偶鸣唱(求偶鸣唱或非求偶鸣唱)和非配偶鸣唱(求偶鸣唱或非求偶鸣唱)对雌鸟进行刺激,观察雌鸟对两端鸣唱的偏爱状况。实验二主要观察雌鸟之间在无听众、听众为熟悉的雄性和听众为配偶条件下的竞争行为。结果表明,雌性灰文鸟大多偏爱配偶鸣唱,相对于配偶的非求偶鸣唱更偏爱非配偶的求偶鸣唱。求偶鸣唱比非求偶鸣唱更具有吸引力,求偶鸣唱更能刺激雌性灰文鸟配偶选择的积极性,这种积极要付出更多的时间和资源,但雌鸟可以通过选择更高质量的雄性配偶获益。在配偶雄性作为听众条件下雌鸟攻击行为最高,显著高于熟悉雄性为听众的条件下,并且两者都显著高于无听众条件下雌鸟的攻击行为。雌性灰文鸟会基于不同"听众"而对雌-雌竞争行为做出适当调整。上述研究结果对于深入理解鸟类的性选择行为机制具有重要帮助作用。     

Digest: Indirect genetic effects of males on female reproductive traits in the wild*

The indirect genetic effects of fathers on the expression and evolution of female reproductive traits in the wild is not well understood. In a wild population of great tits (Parus major), Evans et al. estimated the genetic and nongenetic effects of male mates on two female reproductive traits, lay date and clutch size. The estimated heritability of lay date (but not of clutch size) was increased by 1.5 times after accounting for male indirect genetic effects. This finding illustrates the importance of considering the effects of social partners in classic quantitative genetic models.     

Genetic structure of the date palm (Phoenix dactylifera) in the Old World reveals a strong differentiation between eastern and western populations

Background and Aims Date palms (Phoenix dactylifera, Arecaceae) are of great economic and ecological value to the oasis agriculture of arid and semi-arid areas. However, despite the availability of a large date palm germplasm spreading from the Atlantic shores to Southern Asia, improvement of the species is being hampered by a lack of information on global genetic diversity and population structure. In order to contribute to the varietal improvement of date palms and to provide new insights on the influence of geographic origins and human activity on the genetic structure of the date palm, this study analysed the diversity of the species.Methods Genetic diversity levels and population genetic structure were investigated through the genotyping of a collection of 295 date palm accessions ranging from Mauritania to Pakistan using a set of 18 simple sequence repeat (SSR) markers and a plastid minisatellite.Key Results Using a Bayesian clustering approach, the date palm genotypes can be structured into two different gene pools: the first, termed the Eastern pool, consists of accessions from Asia and Djibouti, whilst the second, termed the Western pool, consists of accessions from Africa. These results confirm the existence of two ancient gene pools that have contributed to the current date palm diversity. The presence of admixed genotypes is also noted, which points at gene flows between eastern and western origins, mostly from east to west, following a human-mediated diffusion of the species.Conclusions This study assesses the distribution and level of genetic diversity of accessible date palm resources, provides new insights on the geographic origins and genetic history of the cultivated component of this species, and confirms the existence of at least two domestication origins. Furthermore, the strong genetic structure clearly established here is a prerequisite for any breeding programme exploiting the effective polymorphism related to each gene pool.     

Webbing life type and behavioral response of the date palm mite, <Emphasis Type="Italic">Oligonychus afrasiaticus</Emphasis>, to webbing residues on leaves and fruits of date palm

The present study examined the webbing life type and behavioral response of date palm mite (DPM) Oligonychus afrasiaticus (McGregor) toward its webbing residues, in presence or absence of immature individuals, on leaves and fruits of date palm. DPM exhibited a complicated web life type on both the leaves and fruits of date palm, which is characterized by the following features: complicated irregular web structure; webbing density on the leaves is medium and on the fruits extremely high; eggs are always laid on the threads of web without web cover; fecal pellets are deposited on the substrate surface (both leaf and fruit); quiescent stages are on the silken web threads; and the preferred site for feeding and walking is under the web. Behavioral observation of DPM females revealed that the midrib of leaves and the base of fruits of date palm were the preferred sites for feeding and web construction. The number and development stage of DPM affected the behavioral response of females on date palm leaves but not on the fruits. DPM spent most time feeding under the web on both the leaves and fruits of date palm.     

"Hidden" reproductive conflict between mates in a wild bird population

Environmental conditions experienced by a female prior to reproducing may be influenced by her mate. Part of such an indirect effect of a male on his partner's reproduction may be genetic (indirect genetic effect). However, a female's direct and a male's indirect genetic effects need not align. We analyzed 10,652 records of seasonal timing of laying, an important reproductive trait in many organisms, of 1864 male and 1916 female common gulls Larus canus collected during 37 years. We show that there is both a direct (female) and an indirect (male) genetic effect (explaining 14.5% and 4.8% of the REML estimated variance in laying date, respectively), but these are significantly negatively correlated (-0.53+/-0.22 SE), indicating that genes for early laying in females are associated with genes for a delaying male effect on his partner's laying date (and vice versa). There is strong selection for laying early in this population, and these sexually antagonistic genetic effects may contribute in maintaining the variation in laying date. Our findings provide an empirical demonstration of a hitherto largely unstudied level of conflict between mates, with important ramifications for our understanding of evolutionary dynamics and mate choice in nature.     

Environmental regulation of sex determination in oil palm: current knowledge and insights from other species

BACKGROUND: The African oil palm (Elaeis guineensis) is a monoecious species of the palm subfamily Arecoideae. It may be qualified as 'temporally dioecious' in that it produces functionally unisexual male and female inflorescences in an alternating cycle on the same plant, resulting in an allogamous mode of reproduction. The 'sex ratio' of an oil palm stand is influenced by both genetic and environmental factors. In particular, the enhancement of male inflorescence production in response to water stress has been well documented. SCOPE: This paper presents a review of our current understanding of the sex determination process in oil palm and discusses possible insights that can be gained from other species. Although some informative phenological studies have been carried out, nothing is as yet known about the genetic basis of sex determination in oil palm, nor the mechanisms by which this process is regulated. Nevertheless new genomics-based techniques, when combined with field studies and biochemical and molecular cytological-based approaches, should provide a new understanding of the complex processes governing oil palm sex determination in the foreseeable future. Current hypotheses and strategies for future research are discussed.     

In vitro hermaphrodism induction in date palm female flower

This study explores and reports on the gain brought to the morphogenetic aptitude of female date palm inflorescences through in vitro hermaphrodism induction. It investigates the main factors involved in the process of sex modification through hormonal induction, such as the floral developmental stage and hormone combination and concentration. It demonstrates that the vestigial stamens (staminodes) of female date palm flowers display a new and high capacity to proliferate under particular in vitro conditions, without blocking carpel's development, leading to morphologically typical hermaphrodite flowers. This de novo activation of repressed stamens was found to occur rapidly. The isolated pollen mother cells appear in the obtained anther's locules and undergo an ordinary microsporogenesis process. The data show that hermaphrodism induction depended heavily on both the growth regulators applied and the flower's developmental stage. They also confirm the early theory that suggests that dioecious plants come from a hermaphrodite ancestor. Such hermaphrodism control can provide new prospects and opportunities for the investigation of the in vitro self-fertilization process. It can also be useful in improving the understanding of the genetic mechanism involved in sex organ development in date palm.     

白背叶(大戟科)性系统和传粉生物学研究

为探讨野桐属(Mallotus)雌雄异株的进化和传粉机制,对白背叶(Mallotus apelta)野生居群的性系统和传粉生物学进行了研究。结果表明,所调查的白背叶居群均由雌性(F)、雄性(M)和少数两性(B)个体组成,平均性比为1：0.66：0.18(F：M：B);3种性别植株的基径大小差异不显著;雌株与两性植株的单花胚珠数、单果结籽数和自然结实率无显著差异;雄株与两性植株的花粉萌发率、花粉组织化学和花粉微形态特征也无显著差异,但雄株的单花花粉量是两性植株的1.26~1.63倍,且差异显著;雌株的异交结实率为96.67%,两性植株的异交结实率为76.00%,两者差异显著,说明居群内雌株的潜在种子生产力明显高于两性植株;野外观察到雄株和两性植株上的雄花具有访花者而雌株没有;雌株经套网处理后结实率超过30%而套袋处理不结实。这些表明白背叶具典型的亚雌雄异株性系统,雌株和雄株的适合度均高于两性植株;雌株以风媒传粉结实,两性植株可能兼有风媒和虫媒传粉特征。     

Sex determination in crayfish: are intersex Cherax quadricarinatus (Decapoda, Parastacidae) genetically females?

In the Australian red-claw crayfish Cherax quadricarinatus (von Martens) (Decapoda, Parastacidae), a gonochoristic species, seven different combinations of intersex individuals (with both male and female genital openings) have been described. However, to date, the genetic basis for this phenomenon has not been investigated. This study was designed to test a simple chromosome-based sex-determination model for C. quadricarinatus that assumes the male to be the homogametic (ZZ) sex. According to our model, intersex individuals that are functionally males are genetically females (WZ). Individual crosses were performed between intersex and female crayfish, with control crosses being performed between normal males and females. The control crosses yielded, in most cases, the expected 1:1 sex ratio in the F1 progeny. Crosses between intersex individuals and females yielded a 1:3 (male:female) sex ratio in most crosses. According to our hypothesis, one-third of the females produced in a cross of a female with an intersex animal should be WW females. The hypothesis was tested by crossing normal males with F1 females, which were progeny of intersex fathers. These crosses yielded almost 100% females, a finding that conforms to the above-suggested sex determination model for C. quadricarinatus and the female WZ genotype of intersex individuals.     

The evolution of phally polymorphism in Bulinus truncatus (Gastropoda,Planorbidae): the cost of male function analysed through life-history traits and sex allocation

In the hermaphrodite freshwater snail Bulinus truncatus, two sexual morphs, euphallic (regular hermaphrodites) and aphallic individuals without a male copulatory organ, co-occur at various ratios in natural populations. Both aphallic and euphallic individuals can reproduce by selfing, but when outcrossing aphallic individuals can only play the female role. A comparison of life-history traits and sex allocation in these two forms provides the opportunity to investigate the evolution and maintenance of sexual polymorphisms. This study was performed to test whether a reallocation of resources from the lost male function to the female function occurs in aphallic snails at the level of both sex organs (sex allocation) and life-history traits. In a first experiment we compared life-history traits over a whole life-cycle under selfing between the two sexual morphs. In a second experiment, the sex organs were weighed to test for a difference in sex allocation between the two morphs. No difference in resource allocation to female function between the two morphs was observed in either experiment. This is in contrast to patterns frequently observed in sexually polymorphic plants, and in a previous study performed on aphally in the same snail species. We discuss the genetic and physiological hypotheses that could explain these results, and their consequences for the evolution and maintenance of phally polymorphism in B. truncatus.     

ISSR marker-assisted selection of male and female plants in a promising dioecious crop: jojoba (Simmondsia chinensis)

Simmondsia chinensis (Link) Schneider, a multipurpose and monogeneric dioecious shrub from arid zones, has emerged as a cash crop all over the globe. Its seed propagation poses severe problems due to its male-biased population: the male:female ratio is 5:1. Investigations have been carried out to generate a sex-specific Inter-simple sequence repeat (ISSR) marker for the early detection of male and female plants. Of the 42 primers analysed with a bulk sample of pooled male DNA and a bulk sample of pooled female DNA, only one primer, UBC-807, produced a unique ~1,200 base-pair fragment in the male DNA. To validate this observation, this primer was re-tested with individual male and female samples from eight cultivars. A similar unique ~1,200 bp fragment was present in the male individuals of all eight cultivars and completely absent in the female individuals tested. This is the first report of the use of ISSR markers to ascertain sex in physiologically mature S. chinensis plants.     

Identification of sex in Simmondsia chinensis (Jojoba) using RAPD markers

Simmondsia chinensis (Link) Schneider, a multipurpose dioecious shrub of arid zones, has emerged as a cash crop. It is being cultivated for its seeds which store liquid wax whose properties are similar to spermaceti (Sperm whale oil), a substitute for petro products and precious high-priced lubricants. Jojoba is a slow-growing desert shrub having a male biased (5:1; male:female ratio) population. Since there is no method available to determine the sex at the seedling stage, current investigations have been carried out to generate a sex-specific random amplified polymorphic DNA (RAPD) marker in jojoba which is based on the PCR amplification of random locations in the genome of plant. Of the 72 primers tested, only one random decamer primer, OPG-5, produced a unique ∼1,400 base pairs fragment in male DNA. To validate this observation, this primer was re-tested with the individuals of male and female samples of four cultivars. The unique ∼1,400 bp fragment was present in male individuals of all the four cultivars and completely absent in respective female individuals tested. To the best of our knowledge, this is the first report to ascertain the sex of jojoba plants at an early stage of development of the taxon.