微管蛋白亚型及其功能

微管是真核细胞构成细胞骨架的主要成分,由α/β微管蛋白组装而成。微管在细胞多种活动中发挥着重要的作用,其功能主要受微管结合蛋白、微管蛋白的翻译后修饰以及微管蛋白亚型的调控。已有研究发现,α/β微管蛋白存在多种亚型,微管蛋白亚型在不同组织以及发育过程中的表达模式差异较大。多种微管蛋白亚型基因的突变可以引起神经系统疾病。该文综述了微管蛋白亚型的研究进展,尤其在微管功能调控、神经系统发育及其相关疾病中的作用。     

花粉蛋白诱导胞内钙离子信号波动的研究

钙离子是细胞生命活动中的一个重要的调节因子,在细胞对外界刺激产生反应以及细胞死亡过程中,它扮演着重要的角色。天花粉蛋白是一种抗肿瘤药物,对绒毛膜上皮癌细胞的杀伤力特别强。通过对绒毛膜上皮癌细胞内钙离子进行ｆｌｕｏ－３／ＡＭ荧光染色发现,天花粉蛋白的加入能诱导绒毛膜上皮癌细胞内钙离子浓度的增加。经天花粉蛋白作用２４小时后,被天花粉蛋白损伤的绒毛膜上皮癌细胞内钙离子的浓度比正常细胞要高得多。在开花粉蛋     

可溶性耐药相关钙结合蛋白

可溶性耐药相关钙结合蛋白(sorcin)是一个21.6 kD的胞浆蛋白,具有典型的EF手臂(EF-hand)钙结合位点, 广泛存在于多种组织中,在心肌细胞中含量最丰富.Sorcin可与肌浆网钙离子通道RyR相互作用影响心肌细胞兴奋——收缩偶联.另一方面,sorcin在肿瘤耐药细胞中大量表达,它可以与细胞中钙离子结合,引起细胞内游离钙离子浓度下降,然后导致钙离子所介导的磷酸酶活性降低,使得具有排药功能的P-gp糖蛋白磷酸化水平下降,最终导致耐药.一旦明确引发和维持细胞耐药的作用机制,就可为克服肿瘤耐药提供新的靶点.同时随着RyR活性抑制作用研究的深入,有望通过sorcin转基因技术治疗心力衰竭.本文主要对sorcin的结构特点和生物学特性进行综述,并初步分析其耐药机制.     

线粒体钙离子单向转运蛋白MCU及调节蛋白MICU1

线粒体钙离子摄入对能量生成、细胞分裂和死亡均具有十分重要的作用,但对该过程的机制却知之甚少。最近研究鉴定出线粒体钙离子单向转运蛋白(MCU,mitochondrial calcium uniporter)和线粒体钙离子摄入蛋白1(MICU1,mitochondrial calcium uptake 1),这两种蛋白都定位于线粒体内膜,均参与钙离子摄入。MCU拥有两个跨膜结构域,显示出钙离子通道活性并对钌红敏感,而MICU1具有两个典型的EF手形结构域,该结构可感知钙离子的变化,可能作为MCU调节蛋白发挥作用。这些研究进展对线粒体内稳态的理解和线粒体相关疾病的治疗具有重要意义。     

钙不依赖性钙调素结合蛋白的研究进展

钙调素是普遍存在于真核生物细胞中、发挥多种生物学调控作用的信号组分.钙调素不仅在有Ca2 情况下通过与钙依赖性钙调素结合蛋白作用而传递信号,也能在相对无Ca2 条件下直接结合钙不依赖性钙调素结合蛋白而传递信号.综述了无钙离子结合钙调素及钙不依赖性钙调素结合蛋白的结构特性、钙不依赖性钙调素结合蛋白的种类及其可能的生物学作用,这将有助于我们深入认识钙调素介导信号途径的特异性、复杂性和多样性.     

朊病毒感染中钙调蛋白相关激酶含量异常变化的研究

朊病毒病是一类具有致死性、传染性和进行性的神经退行性疾病。目前研究发现许多因子都参与了疾病的发生发展过程,包括细胞因子、激酶和一些离子,其中钙离子及相关激酶在朊病毒病致病机制中的研究报道较少,为了探究朊病毒感染中钙调蛋白相关下游激酶的含量变化情况,本研究利用多种检测方法对朊病毒感染细胞系及小鼠脑组织进行了分析。结果显示朊病毒感染后,钙离子和钙调蛋白(CaM)的表达水平升高,下游Ca²⁺/CaM复合物依赖性激酶CaMKIα和CaMKIV表达水平下降,同时这些激酶的上游激酶CaMKKα含量降低,提示朊病毒感染后神经元中钙离子和相关激酶稳态失衡,这种异常变化很可能影响下游多种转录因子合成,这些结果为解释朊病毒感染后神经元大量丢失提供了科学依据。     

天然产物中的钙离子拮抗剂

钙离子拮抗剂是一类广泛应用于心血管疾病以及其它多种疾病的药物。本文综述了来源于天然产物的钙离子拮抗剂。     

BTB蛋白结构与功能研究进展

BTB(Broad-complex, Tramtrack, and Bric-a-brac)蛋白家族存在于痘病毒以及几乎所有真核生物中,该类蛋白为多结构域蛋白,最为显著的特征是含有高度保守且能介导蛋白与蛋白间相互作用的BTB结构域。BTB蛋白具有多种功能,其功能特异性取决于BTB蛋白中其他结构域以及它的互作蛋白。BTB蛋白广泛参与转录调节,染色质重组装,细胞骨架调控和泛素化降解等过程,与胚胎发育,器官形成,信号转导以及免疫调节等生理过程密切相关。除此之外,多种疾病如癌症,神经系统和骨骼肌系统疾病等的病理过程也与BTB蛋白相关。本文以蛋白结构为基础总结了该家族的共性规律并重点论述了BTB蛋白在转录调节以及泛素化降解过程中发挥的重要作用,以期为后续研究提供重要参考。     

钙对细胞骨架的调控及其在生命活动中的重要作用

本文综述了钙对细胞骨架的调控方式主要有两种方式： 一是钙离子直接对细胞骨架结合蛋白进行调节;二是钙离子通过钙调节蛋白到钙调节蛋白结合蛋白进而对细胞骨架进行调节     

凝血酶引致的血小板内钙,镁离子浓度及分布状态的变化

我们使用荧光探针ｆｕｒａ２、ｍａｇ－ｆｕｒａ２和ｆｌｕｏ３测定了凝血酶引致的血小板凝聚过程中细胞内钙、镁离子浓度的变化及分布状态。在０．５Ｕ／ｍｌ凝血酶作用下,血小板细胞内钙离子浓度呈双时相变化。血小板细胞群中细胞内钙离子浓度呈正态分布。伴随血小板凝聚时细胞内钙离子浓度增加,血小板细胞内游离镁离子浓度也明显增加,提示镁离子在血小板凝聚中有重要的作用。     

The DxDxDG motif for calcium binding: multiple structural contexts and implications for evolution

Calcium ions regulate many cellular processes and have important structural roles in living organisms. Despite the great variety of calcium-binding proteins (CaBPs), many of them contain the same Ca(2+)-binding helix-loop-helix structure, referred to as the EF-hand. In the canonical EF-hand, the loop contains three calcium-binding aspartic acid residues, which form the DxDxDG sequence motif, and is flanked by two alpha-helices. Recently, other CaBPs containing the same motif, but lacking one or both helices, have been described. Here, structural motif searches were used to analyse the full diversity of structural context in the known set of DxDxDG-containing CaBPs, including those where the structural resemblance of a given DxDxDG motif to that of EF-hands had not been noted. The results obtained indicate that the EF-hand represents but one, among many, structural context for the DxDxDG-like Ca(2+)-binding loops. While the structural similarity of the binuclear calcium-binding sites in anthrax protective antigen and human thrombospondin suggests that they are homologous, evolutionary relationships for mononuclear sites are harder to discern. The possible scenarios for the evolution of DxDxDG motif-containing calcium-binding loops in a variety of non-homologous proteins suggested loop transplant as a mechanism perhaps responsible for much of the diversity in structural contexts of present day DxDxDG-type CaBPs. Additionally, while it can be shown that existence of a DxDxDG sequence is not enough to confer a conformation suitable for calcium binding, local convergent evolution may still have a role. The analysis presented here has consequences for the prediction of calcium binding from sequence alone.     

Calcium in plant defence-signalling pathways

In plant cells, the calcium ion is a ubiquitous intracellular second messenger involved in numerous signalling pathways. Variations in the cytosolic concentration of Ca2+ ([Ca2+]cyt) couple a large array of signals and responses. Here we concentrate on calcium signalling in plant defence responses, particularly on the generation of the calcium signal and downstream calcium-dependent events participating in the establishment of defence responses with special reference to calcium-binding proteins.     

A novel calcium-binding protein is associated with tau proteins in tauopathy

Tauopathies are a group of neurological disorders characterized by the presence of intraneuronal hyperphosphorylated and filamentous tau. Mutations in the tau gene have been found in kindred with tauopathy. The expression of the human tau mutant in transgenic mice induced neurodegeneration, indicating that tau plays a central pathological role. However, the molecular mechanism leading to tau-mediated neurodegeneration is poorly understood. To gain insights into the role that tau plays in neurodegeneration, human tau proteins were immunoprecipitated from brain lysates of the tauopathy mouse model JNPL3, which develops neurodegeneration in age-dependent manner. In the present work, a novel EF-hand domain-containing protein was found associated with tau proteins in brain lysate of 12-month-old JNPL3 mice. The association between tau proteins and the novel identified protein appears to be induced by the neurodegeneration process as these two proteins were not found associated in young JNPL3 mice. Consistently, the novel protein co-purified with the pathological sarkosyl insoluble tau in terminally ill JNPL3 mice. Calcium-binding assays demonstrated that this protein binds calcium effectively. Finally, the association between tau and the novel calcium-binding protein is conserved in human and enriched in Alzheimer's disease brain. Taken together, the identification of a novel calcium-binding protein associated with tau protein in terminally ill tauopathy mouse model and its confirmation in human brain lysate suggests that this association may play an important physiological and/or pathological role.     

Calcium-binding proteins and development

The known roles for calcium-binding proteins in developmental signaling pathways are reviewed. Current information on the calcium-binding characteristics of three classes of cell-surface developmental signaling proteins (EGF-domain proteins, cadherins and integrins) is presented together with an overview of the intra-cellular pathways downstream of these surface receptors. The developmental roles delineated to date for the universal intracellular calcium sensor, calmodulin, and its targets, and for calcium-binding regulators of the cytoskeleton are also reviewed.© Kluwer Academic Publishers     

Predicting calcium-binding sites in proteins - a graph theory and geometry approach

Identifying calcium-binding sites in proteins is one of the first steps towards predicting and understanding the role of calcium in biological systems for protein structure and function studies. Due to the complexity and irregularity of calcium-binding sites, a fast and accurate method for predicting and identifying calcium-binding protein is needed. Here we report our development of a new fast algorithm (GG) to detect calcium-binding sites. The GG algorithm uses a graph theory algorithm to find oxygen clusters of the protein and a geometric algorithm to identify the center of these clusters. A cluster of four or more oxygen atoms has a high potential for calcium binding. High performance with about 90% site sensitivity and 80% site selectivity has been obtained for three datasets containing a total of 123 proteins. The results suggest that a sphere of a certain size with four or more oxygen atoms on the surface and without other atoms inside is necessary and sufficient for quickly identifying the majority of the calcium-binding sites with high accuracy. Our finding opens a new avenue to visualize and analyze calcium-binding sites in proteins facilitating the prediction of functions from structural genomic information.     

The structure of the Arabidopsis thaliana SOS3: molecular mechanism of sensing calcium for salt stress response

The Arabidopsis thaliana SOS3 gene encodes a calcium sensor that is required for plant salt tolerance. The SOS3 protein binds to and activates the self-inhibited SOS2 protein kinase, which mediates the expression and activities of various transporters important for ion homeostasis under salt stress. SOS3 belongs to a unique family of calcium-binding proteins that contain two pairs of EF hand motifs with four putative metal-binding sites. We report the crystal structure of a dimeric SOS3 protein in complex with calcium, and with calcium and manganese. Analytical ultracentrifugation experiments and circular dichroism measurements show that calcium binding is responsible for the dimerization of SOS3. This leads to a change in the global shape and surface properties of the protein that may be sufficient to transmit the Ca(2+) signal elicited during salt stress.     

Backbone dynamics of a cbEGF domain pair in the presence of calcium

Calcium binding (cb) epidermal growth factor-like (EGF) domains are found in a wide variety of extracellular proteins with diverse functions. In several proteins, including the fibrillins (1 and 2), the low-density lipoprotein receptor, the Notch receptor and related molecules, these domains are organised as multiple tandem repeats. The functional importance of calcium-binding by EGF domains has been underscored by the identification of missense mutations associated with defective calcium-binding, which have been linked to human diseases. Here, we present (15)N backbone relaxation data for a pair of cbEGF domains from fibrillin-1, the defective protein in the Marfan syndrome. The data were best fit using a symmetric top model, confirming the extended conformation of the cbEGF domain pair. Our data demonstrate that calcium plays a key role in stabilising the rigidity of the domain pair on the pico- to millisecond time-scale. Strikingly, the most dynamically stable region of the construct is centred about the domain interface. These results provide important insight into the properties of intact fibrillin-1, the consequences of Marfan syndrome causing mutations, and the ultrastructure of fibrillins and other extracellular matrix proteins.     

Crystal structure of calcium dodecin (Rv0379), from Mycobacterium tuberculosis with a unique calcium-binding site

In eukaryotes, calcium-binding proteins play a pivotal role in diverse cellular processes, and recent findings suggest similar roles for bacterial proteins at different stages in their life cycle. Here, we report the crystal structure of calcium dodecin, Rv0379, from Mycobacterium tuberculosis with a dodecameric oligomeric assembly and a unique calcium-binding motif. Structure and sequence analysis were used to identify orthologs of Rv0379 with different ligand-binding specificity.     

Identification of a developmentally regulated calcium-binding protein in Trypanosoma brucei

Calcium ions mediate cellular activity by binding to specific cellular proteins. The following study systematically examines the cellular complement of calcium-binding proteins in different cell fractions and life cycle stages of Trypanosoma brucei. Using a 45Ca-gel overlay procedure, eight calcium-binding proteins were consistently observed. The majority of proteins were cytosolic (84, 70, 64, 22, and 15 kd) while the remainder (55, 46, and 29 kd) were particulate. Although calmodulin was detected amongst the calcium-binding proteins, it did not represent the majority of calcium-binding activity. Of special interest was the 46 kd calcium-binding protein which was associated with 3-fold more calcium in cultured procyclic forms than in slender bloodstream forms. By contrast, promastigote forms of Leishmania mexicana did not contain the 46 kd calcium-binding protein. These data suggest that responsiveness to calcium signals may vary during the trypanosome life cycle as a result of changes in the cellular complement of calcium-binding proteins.     

Calcium-binding to lens betaB2- and betaA3-crystallins suggests that all beta-crystallins are calcium-binding proteins

Crystallins are the major proteins of a mammalian eye lens. The topologically similar eye lens proteins, beta- and gamma-crystallins, are the prototype and founding members of the betagamma-crystallin superfamily. Betagamma-crystallins have until recently been regarded as structural proteins. However, the calcium-binding properties of a few members and the potential role of betagamma-crystallins in fertility are being investigated. Because the calcium-binding elements of other member proteins, such as spherulin 3a, are not present in betaB2-crystallin and other betagamma-crystallins from fish and mammalian genomes, it was argued that lens betagamma-crystallins should not bind calcium. In order to probe whether beta-crystallins can bind calcium, we selected one basic (betaB2) and one acidic (betaA3) beta-crystallin for calcium-binding studies. Using calcium-binding assays such as 45Ca overlay, terbium binding, Stains-All and isothermal titration calorimetry, we established that both betaB2- and betaA3-crystallin bind calcium with moderate affinity. There was no significant change in their conformation upon binding calcium as monitored by fluorescence and circular dichroism spectroscopy. However, 15N-1H heteronuclear single quantum correlation NMR spectroscopy revealed that amide environment of several residues underwent changes indicating calcium ligation. With the corroboration of calcium-binding to betaB2- and betaA3-crystallins, we suggest that all beta-crystallins bind calcium. Our results have important implications for understanding the calcium-related cataractogenesis and maintenance of ionic homeostasis in the lens.