Reactivation of photodynamically inactivated lambda phages

Summary UV-irradiated c phages show a lower survival when plated on rec ^–-cells as compared to rec ⁺-cells. Photodynamically inactivated c phages show the lowest survival on hcr ^–; rec ^–-cells. The rec-functions do not influence the repair of UV- or photodynamically induced lesions in T1 phages.     

DNA relatedness among bacteriophages of the morphological group C3

Six bacteriophages with an elongated head and a short, noncontractile tail were compared by DNA-DNA hybridization, seroneutralization kinetics, mol% G+C and molecular weight of DNA, and host range. Three phage species could be identified. Phage species 1 containedEnterobacter sakazakii phage C2,Erwinia herbicola phages E3 and E16P, andSalmonella newport phage 7–11. These phages had a rather wide host range (4 to 13 bacterial species). DNA relatedness among species 1 phages was above 75% relative binding ratio (S1 nuclease method, 60°C) when labeled DNA from phage C2 was used, and above 41% when labeled DNA from phage E3 was used. Molecular weight of DNA was about 58×10⁶ (C2) to 67 ×10⁶ (E3). The mol% G+C of DNA was 43–45. Anti-C2 serum that neutralizes all phages of species 1 does not neutralize phages of the other two species. Species 2 contains only coliphage Esc-7-11, whose host range was only oneEscherichia coli strain out of 188 strains of Enterobacteriaceae studied; it was unrelated to the other two species by seroneutralization and DNA hybridization. DNA from phage Esc-7-11 had a base composition of 43 mol% G+C and a molecular weight of about 45×10⁶. Species 3 contains onlyProteus mirabilis phage 13/3a. Its host range was limited to swarmingProteus species. Species 3 was unrelated to the other two species by seroneutralization and DNA hybridization. DNA from phage 13/3a had a base composition of 35 mol% G+C and molecular weight of about 53×10⁶. It is proposed that phage species be defined as phage nucleic acid hybridization groups.     

Spatial distribution and morphologic diversity of virioplankton in Lake Donghu, China

The spatial distribution and morphological diversity of virioplankton were determined in Lake Donghu which contains three trophic regions: hypertrophic, eutrophic and mesotrophic region. Virioplankton abundance measured by transmission electron microscope (TEM) ranged from 7.7 × 10⁸ to 3.0 × 10⁹ ml^–1, being among the highest observed in any natural aquatic system examined so far. The spatial distribution of virioplankton was correlated significantly with chlorophyll a concentration (r = 0.847; P < 0.01) at the sampling sites in Lake Donghu. 76 morphotypes were observed. Most morphotypes have tails, belonging to Siphoviridae, Myoviridae and Podoviridae. The majority of tailed phages in the lake were Myoviridae. Morphotypes which were rarely reported, such as prolate-headed virus-like particles, lemon-shaped virus-like particle, and viruses resembling Tectiviridae and Corticoviridae were all observed in the lake. It is concluded that the high viral abundance might be associated with high density of phytoplankton including algae and cyanobacteria. There was high viral diversity in this eutrophic shallow lake. In addition, cyanophage represented an important fraction of the virioplankton community in Lake Donghu.     

Transduction of Plasmid Antibiotic Resistance Determinants with PseudoT-Even Bacteriophages

Transduction of antibiotic resistance determinants of the plasmid pBR322 with pseudoT-even bacteriophages RB42, RB43, and RB49 was studied. It is established that antibiotic resistance determinants of plasmid pBR322 fromEscherichia coli recA ⁺ and recA ^– donor strains do not differ significantly in respect to the efficiency of transduction. Amber mutants RB43-21, RB43-33, and a double amber mutant RB43am21am33 were obtained. These mutants facilitated transduction experiments in some cases. Transduction of antibiotic resistance markers of the vector plasmid pBR325 and recombinant plasmid pVT123, containing a DNA fragment with hoc–segE–uvsW genes of phage T4, was studied. The frequency of appearance of transductants resistant to pseudoT-even bacteriophages used in transduction was determined, and the sensitivity of resistant transductants to 32 RB bacteriophages and also to phages , T2, T4, T5, T6, T7, and BF23 was estimated. The efficiency of plating pseudoT-even bacteriophages RB42 and RB43 on strain E. coli 802 himA hip carrying mutations in genes that encode subunits of the Integration Host Factor (IHF) was shown to be higher than on isogenic strain E. coli 802. The growth of pseudoT-even bacteriophages limitedin vivo by modification–restriction systems of chromosomal (EcoKI, EcoBI), phage (EcoP1I), and plasmid (EcoRI, EcoR124I, and EcoR124II) localization was analyzed. It was shown that these phages were only slightly restricted by the type I modification–restriction systemsEcoBI, EcoR124I, and EcoR124II. Phage RB42 was restricted by systems EcoKI, EcoP1I, and EcoRI; phage RB43, by systems EcoKI and EcoRI; and phage RB49, by the EcoRI modification–restriction system.     

Lysogeny in encapsulated and nontypable strains ofHaemophilus influenzae

Encapsulated and nontypableHaemophilus influenzae isolates recovered from pediatric patients and healthy children were examined for their ability to lyse and to release phage after mitomycin C induction. Lysis occurred in 16 out of 58 isolates tested for lysogeny. The serotype b capsule ofH. influenzae does not exhibit an inhibitory effect on either cell lysis or the ability of the cells to become lysogenized. Electron microscopic examination revealed the presence of tailed particles in 11 lysates. The tailed particles belong to two morphological groups (A and B) according to the classification of Bradley [Bacteriol. Rev. 31:230–314]. None of the phages was able to produce plaques when tested on a large number of strains. However, five lysates exhibited killing properties involving several nontypableH. influenzae strains. This effect sedimented with the bacteriophage after centrifugation. All the phages recovered fromH. influenzae isolates in this study appeared to be genetically defective.     

Crustacean assemblage and environmental characteristics of a man-made solar saltwork in southern France,with emphasis on anostracan (Branchiopoda) population dynamics

Physical and chemical variables, anostracan populations (Artemia parthenogenetica and Branchinella spinosa) and other biota were studied during 1996–1997 in a Camargue saltern (max. depth 1 m). The taxonomic composition and density of macroinvertebrates were investigated twice monthly, based on benthic substrate and water column samples. Fauna was composed of three groups in terms of numerical importance. The benthic macroinvertebrates were represented only by nematodes (< 50 ind. m^–2 to > 500 ind. m^–2 in November–December and May respectively). The zooplankton was dominated by crustaceans, one cladoceran, Moina salina (ranging from 670 to 2350 ind. m^–2 in spring), two anostracans, Artemia parthenogenetica (< 50 ind. m^–2 in autumn), and Branchinella spinosa (max. 190 ind. m^–2 in December to absent in April), and two copepods, Cletocamptus retrogressus (max. density 2000 ind. m^–2 in November), and Eurytemora velox (max. density 650 ind. m^–2 in February–March). Insects (Chironomidae, Culicidae) were rare, with mean densities < 1 ind. m^–2. The phenology of each crustacean population is discussed in relation to physical and chemical water variables. Salinity appeared to be of greatest importance regulating the population abundance.     

Bacteriophage Mu DNA replication is stimulated by non-essential early functions

Summary The replication of a spontaneous Kil^– mutant of bacteriophage Mu has been investigated. The Kil^– mutation (Mucts62-13/4), which was introduced into a defective prophage, is pleiotrophic, leading to the loss of also the Gam, Cim and Sot functions. The mutation is caused by an insertion with the characteristics of IS1, located just outside the B gene.Mucts62-13/4 phages form extremely small plaques on wildtype indicator strains. The replication of the insertion mutant as compared to Mucts62 is strongly reduced. Normal replication could be restored by relieving the polarity of the insertion or by complementation with defective prophages which express all early functions. Apparently, early genes other than A and B are involved in normal Mu DNA replication.     

Digestion and energy metabolism in a small arboreal marsupial,the Greater Glider (Petauroides volans), fed high-terpeneEucalyptus foliage

Summary The digestion and metabolism ofEucalyptus radiata foliage was studied in a small (1–1.5 kg) arboreal marsupial, the greater glider (Petauroides volans). Mean dry matter intake was 44 g·kg^–0.75·d^–1 and mean cell wall digestibility was 34%; these values fall within the range of other marsupials fedEucalyptus foliage. Digestible energy content ofE. radiata was high compared to other eucalypts because of the high content and digestibility of essential oils. However, excretion of essential oils and their metabolites in the urine meant that greater gliders retained only 55% of their digestible energy intakes (0.61 MJ · kg^–0.75· d^–1) as metabolizable energy (ME). Low ME intakes were not offset by low standard metabolic rates (2.39 W · kg^–0.75), but the efficiency with which ME substituted for tissue energy was high (94%), so that greater gliders were able to maintain energy balance and body mass onE. radiata foliage.Abbreviations ME metabolizable energy - DE digestible energy - RQ respiratory quotient - FHP fasting heat production     

Characteristics of five bacteriophages of yellow-pigmented enterobacteria

Four bacteriophages (C2, C2F, E3, and E16P) belonging to morphological group C3 and one belonging to morphological group A3 (E16B) were purified by deuterium oxide gradient centrifugation and cesium chloride gradient centrifugation. Morphological group C3 phages had a densityd=1.534–1.541 and group A3 phage (E16B) had a densityd=1.492 in CsCl. Phages of morphological group C3 isolated onEnterobacter sakazakii (C2, C2F) and onErwinia herbicola (E3, E16P) were compared withSalmonella newport phage 7-11 with respect to host-range, genome size, antigenic relatedness, and ultraviolet and heat susceptibility. Phages C2 and C2F could multiply inEnterobacter cloacae, E. sakazakii, Erwinia herbicola, E. rhapontici, andLevinea malonatica; whereas phages E3, E16P, and 7-11 could multiply on these same species and onEscherichia coli and severalSalmonella serotypes. Molecular weights of phage DNAs were determined to be 58×10⁶ (C2), 60×10⁶ (7-11), 67×10⁶ (E3), and 39×10⁶ (E16B).All studied phages of morphological group C3 (includingSalmonella newport phage 7-11) were neutralized by anti-phage C2 serum. Despite differences in neutralization kinetics and in ultraviolet and heat sensitivities, these phages of morphological group C3 constitute one phage species. Phage E16B (morphological group A3) had a host-range limited toEnterobacter cloacae, Erwinia herbicola, andE. rhapontici; it was antigenically unrelated to the preceding phage group C3, and showed ultraviolet and heat susceptibility close to that of coliphage T4.     

Host specificity of DNA produced byEscherichia coli

Summary Phage , whose DNA was physically labelled with density markers²H and¹⁵N and biologically labelled with K-host specificity, was submitted to one growth cycle on a restriction deficient (r ^–) strain ofE. coli B exerting normally its modification function (m _B ⁺ ). All progeny phages, including those with nonreplicated, fully conserved parental DNA molecules, acquired the B-specificity in this passage, independently of DNA replication and of the presence of the K-specificity on the DNA. Phages with parental DNA had preserved the parental K-specificity. However, about half of the phages carrying a halfheavy DNA molecule (corresponding presumably to a semiconserved double helix) did only plate on B and onr ^– mutants, but not on K12. Experimental evidence is presented, that DNA degradation is the cause of this lack of growth in K12, while in infections initiated by the other half of the hybrids both strands (that with K and B specificity and that with only B specificity) are preserved and are recovered in the progeny with equal chance.     

Hydrogen peroxide induces the repair of UV-damaged DNA inEscherichia coli: AlexA-independent butuvrA- andrecA-dependent mechanism

Pretreatment with 2.5mm H₂O₂ protects bacterial cells against UV killing, a phenomenon that is independent of the SOS response. This protection possibly involves the induction of some other DNA repair mechanism, sincelexA (Ind^–) mutants pretreated with this concentration of H₂O₂ enhance the repair of UV-damaged phages. Moreover, the induction of this DNA repair mechanism is independent of theoxyR regulon. However, the repair of UV-damaged phages is not enhanced inrecA anduvrA mutants, suggesting a DNA repair mechanism independent of LexA cleavage or OxyR activation, but dependent on RecA and UvrA proteins.     

DNA-replication of spi - mutants of bacteriophage lambda in recombination-deficient bacteria

Summary Phage imm ²¹ c spi ^– infecting recA ^– cells gives a burst of 6 progeny phages compared to 120 in rec ⁺ cells. Parental spi ^– DNA is not degraded in recA ^– cells. The synthesis of early replication products is enhanced by a factor of 2 yielding 30 closed circular progeny DNA molecules per cell compared to 15 in the control. These DNA supercoils include 9% of dimer molecules under red ^– recA ^– and red ^– rec ⁺ conditions. On the other hand, the formation of linear phage DNA molecules in recA ^– cells is reduced by a factor of 5 to 6, if compared to spi ^– DNA in rec ⁺ and spi ⁺ DNA in recA ^– cells, respectively. The specific biological activity of these linear molecules in the helper phage assay system is unimpaired. Intermediates of late spi ^– replication under recA ^– conditions are supposed to be the unprotected targets of the action of the recB ⁺ recC ⁺ nuclease.     

Influence of operational parameters in the flocculation and production ofLactobacillus plantarum

Summary The influence of different operational parameters, such as the dilution rate (D) and the bleeding rate (B), in the production of a flocculent strain ofLactobacillus plantarum was studied. The effect of the dilution rate was demonstrated to be related to the lactic acid concentration inside the reactor. The effect of the bleeding rate was shown to be critical in the stabilization of the operation (due to a better pH control). It also allowed a continuous recovery of cells outside the reactor. Viability testing of the lactic starter cultures showed that operation with cell purge increased the viability of the starter cultures obtained.Nomenclature B Bleeding rate, h^–1 - D Dilution rate, h^–1 - F Feed flow rate, L h^–1 - I Feed velocity, m h^–1 - Specific growth rate, h^–1 - v Lactic acid specific productivity, g g^–1 h^–1 - P Product concentration (lactic acid), g L^–1 - P _out Product concentration leaving the system, g L^–1 - Q _b Bleeding flow rate, L h^–1 - R Recirculation velocity, m h^–1 - S Substract concentration, g L^–1 - t Time, h - T _p Time of ascensional flow (length of the column/total ascensional velocity), h - T _r Residence time (1/D), h - V Volume of the reactor, L - X Cell concentration, g L^–1 - X _out Cell concentration leaving the system, g L^–1     

Kinetic analysis of ethanol production by an acetate-resistant strain of recombinant Zymomonas mobilis

Zymomonas mobilis ZM4/Ac^R (pZB5), a mutant recombinant strain with increased acetate resistance, has been isolated following electroporation of Z. mobilis ZM4/Ac^R. This mutant strain showed enhanced kinetic characteristics in the presence of 12 g sodium acetate l^–1 at pH 5 in batch culture on 40 g glucose, 40 g xylose l^–1 medium when compared to ZM4 (pZB5). In continuous culture, there was evidence of increased maintenance energy requirements/uncoupling of metabolism for ZM4/Ac^R (pZB5) in the presence of sodium acetate; a result confirmed by analysis of the effect of acetate on other strains of Z. mobilis. Nomenclature m Cell maintenance energy coefficient (g g^–1 h^–1)Maximum overall specific growth rate (1 h^–1)Maximum specific ethanol production rate (g g^–1 h^–1)Maximum specific total sugar utilization rate (g g^–1 h^–1)Biomass yield per mole of ATP (g mole^–1 Ethanol yield on total sugars (g g^–1)Biomass yield on total sugars (g g^–1)True biomass yield on total sugars (g g^–1)     

The effect of N-terminal substitutions on the biological activity of MSH fragments

In order to study the role of N-terminal substitutions of peptide sequences related to the active site of α-melanotropin, [Glp⁵]α-MSH(5–10), [Glp⁵, -Phe⁷]α-MSH(5–10), [Sar⁵, -Phe⁷]α-MSH(5–10), [Nle⁴, -Phe⁷]α-MSH(4–10), [N-carbamoyl]α-MSH(5–10), and formyl and acetyl derivatives of α-MSH(5–10), [Gly⁵]α-MSH(5–10) and [Gly⁵, -Phe⁷]α-MSH(5–10), were synthesized in solution. The N-terminal acylations enhance by 2 to 10 times the melanin-dispersing activity of the unsubstituted sequences. Alkylation of the N-terminus does not change the biological activity of the parent peptide, suggesting the necessity of a carbonyl group for increasing the hormonal effect.     

Influence of cis-[Re2GABA2Cl4]Cl2 on the antioxidant defense system parameters of normal human blood

The effect of the rhenium complex cis-[Re₂GABA₂Cl₄]Cl₂ on the antioxidant parameters of normal human blood in vitro have been studied. The results suggest that the complex influences various enzymes in the cascade of reactions utilizing active oxygen metabolites. However, the manifestation of this activity varies over the studied concentration range of the complex in the preincubation medium (10^–12-10^–4 M), so the effects appear to be concentration-dependent. The largest differences in antioxidant parameters in comparison with control were observed for the concentrations 10^–8, 10^–5, and 10^–4 M. Thus, correlations between the peroxidation level, superoxide dismutase (SOD) activity, antioxidant factor (F), and indexes of resistance of erythrocytes for hemolysis (TR) were found.     

Chaff piles of harvester ant (Messor spp.) nests in a desert ecosystem

Summary The plant species composition of the chaff piles of three species of harvester ant (Messor spp.) and the contribution of the chaff to the organic pool were studied from August 1985 to July 1987. There were distinct differences in the plant species composition of the chaff of the three species. We attribute this to the different diets of the three species, which reflect the relative sizes of their individuals and their foraging strategies. The amount of chaff accumulated varies greatly between the three species (Messor rugossus: 127–196 g · ha^–1 · y^–1;Messor ebeninus: 2823–4437 g · ha^–1 · y^–1;Messor arenarius: 2165–2535 g · ha^–1 · y^–1), although the number of nests per hectare is virtually the same. We found that the amount of chaff is related to the rate of activity and the size of the individuals of each of the three ant species. The total chaff accumulated during the study period was 19.2 kg · ha^–1, which is an important contribution to the organic matter in the soil in the Negev desert ecosystem.     

Decomposition and nutrient release by green manures in a tropical hillside agroecosystem

The decomposition and nutrient release of 12 plant materials were assessed in a 20-week litterbag field study in hillsides from Cauca, Colombia. Leaves of Tithonia diversifolia (TTH) and Indigofera constricta (IND) decomposed quickly (k=0.035±0.002 d^–1), while those of Cratylia argentea (CRA) and the stems evaluated decomposed slowly (k=0.007±0.002 d^–1). Potassium presented the highest release rates (k>0.085 d^–1). Rates of N and P release were high for all leaf materials evaluated (k>0.028 d^–1) with the exception of CRA (N and P), TTH and IND (P). While Mg release rates ranged from 0.013 to 0.122 d^–1, Ca release was generally slower (k=0.008–0.041 d^–1). Initial quality parameters that best correlated with decomposition (P>0.001) were neutral detergent fibre, NDF (r=–0.96) and in vitro dry matter digestibility, IVDMD (r=0.87). It is argued that NDF or IVDMD could be useful lab-based tests during screening of plant materials as green manures. Significant correlations (P>0.05) were also found for initial quality parameters and nutrient release, being most important the lignin/N ratio (r=–0.71) and (lignin+polyphenol)/N ratios (r=–0.70) for N release, the C/N (r=0.70) and N/P ratios (r=–0.66) for P release, the hemicellulose content (r=–0.75) for K release, the Ca content (r=0.82) for Ca release, and the C/P ratio (r=0.65) for Mg release. After 20 weeks, the leaves of Mucuna deerengianum released the highest amounts of N and P (144.5 and 11.4 kg ha^–1, respectively), while TTH released the highest amounts of K, Ca and Mg (129.3, 112.6 and 25.9 kg ha^–1, respectively). These results show the potential of some plant materials studied as sources of nutrients in tropical hillside agroecosystems.     

Comparative Studies with tox+ and tox? Corynebacteriophages

The characteristics of nine inducible temperate corynebacteriophages designated α^tox+, β^tox+, P^tox+, γ^tox−, π^tox+, K^tox−, ρ^tox−, L^tox+, and δ^tox+ have been compared. Virion morphology and ability to recombine genetically with the well-studied phage β^tox+ have been correlated with other properties of the phages, and the distribution of the genetic marker tox+ among related and relatively unrelated corynebacteriophages has been analyzed. The immunity specificity, host range, and plaque morphology of each phage were determined. The phages can be separated into five groups with different immunity specificities. Each type of host range previously recognized in mutants of phage β^tox+ was present in one or more of the phages included in the present study, and the phages were found to produce plaques of several different morphological types. Representative phages with each of the five types of immunity specificity were further characterized with respect to virion morphology, ability to recombine with phage β^tox+, latent period, average burst size, and neutralization by homologous and heterologous antiphage sera. All of these phages have polyhedral heads and long slender tails, but two distinct morphological types were distinguished by the sizes and proportions of the components of the virions. Only phages of the same morphological type as β^tox+ were capable of genetic recombination with β^tox+, but morphological similarity between phages was not sufficient to insure interfertility. The phages which recombined with β^tox+ resembled one another in plaque morphology, latent period, and average burst size, whereas phages which failed to recombine with β^tox+ differed in these characteristics. The phages capable of genetic recombination with β^tox+ were found to differ from each other in immunity specificity, host range, neutralization by antiphage sera, and toxinogenicity. Thus, these latter characteristics are of limited value in establishing the extent of relatedness between corynebacteriophages. The genetic marker tox+ was not consistently correlated with any other property of the corynebacteriophages analyzed in this study. The most striking finding regarding the distribution of the tox+ marker is its presence both in β^tox+ and δ^tox+, phages which fail to recombine genetically and which differ in virion morphology. The presence of the tox+ marker in genetically unrelated corynebacteriophages poses many questions concerning the origin(s) of tox+ and the evolution of the phage-host interactions which determine the ability of corynebacteria to synthesize diphtherial toxin.     

Slow low-threshold potassium current inHelix pomatia neurons

A low-threshold outward current was studied in the neurons ofHelix pomatia at –70 to –30 mV using a two-electrode voltage clamp technique. In addition to the well-known A current (I _A), a slower outward current calledI _As (slow) was revealed. Activation and inactivation times ofI _As at –40 mV ranged from 90 to 120 msec and from 3 to 5 sec, respectively. The current recovered within 2 to 5 sec after inactivation at –120 mV. Analysis of changes in the reversal potential ofI _As caused by an increase in external potassium concentration suggests a potassium origin forI _As. The curves ofI _As stationary activation and inactivation fit the Boltzmann equation. Deriving from an activation curve, the activation potential for a half-maximum current,, is –40 mV, and the slope factor,k, is –9.8 mV, while those values for the inactivation curve are –84 mV (a half-maximum inactivation) and 7.5 mV.I _As is blocked by 4-aminopyridine (1–30 µM), tetraethylammonium (1 mM), and Ba²⁺ (1 mM), but is resistant to Cs⁺ (1 mM). PeakI _As is not affected either by substitution of external Ca²⁺ for Mg²⁺ or by application of Cd²⁺ (0.5–1.0 mM). The results suggest that activation ofI _As does not require Ca²⁺ entry into the cell.Neirofiziologiya/Neurophysiology, Vol. 25, No. 6, pp. 427–432, November–December, 1993.