IL-1β基因单核苷酸多态性与腰椎间盘疾病的相关性

为研究汉族人白细胞介素-1β(IL-1β)基因-511T＞C和 3954C＞T位点单核苷酸多态性与腰椎间盘疾病的关系,采用聚合酶链反应技术,扩增81例腰椎间盘疾病患者和101例正常对照者中分别包含IL-1β基因-511T＞C和 3954C＞T位点的片段,酶切法鉴定IL-1β基因-51iT＞C和 3954C＞T位点单核苷酸多态性情况,比较两组中基因多态性与腰椎间盘疾病的关系.同时,利用MRI检测两组腰椎间盘退变的情况,并分析其中小于45岁者IL-1β基因多态性与腰椎间盘退变严重程度的关系.结果显示,腰椎间盘疾病病例组及对照组中均存在IL-1β基因-511T＞C和 3954C＞T位点单核苷酸多态性.IL-1β基因-511T＞C位点TT、TC和CC基因型,T,C基因型差别与腰椎间盘疾病有关(P＜0.01),与腰椎间盘退变严重程度无关(P＞0.05),但IL-1β基因 3954C＞T位点单核苷酸多态性与腰椎间盘退变严重程度及腰椎间盘疾病均无关(P＞0.05).表明在汉族人中,存在IL-1β基因-511T＞C和 3954C＞T位点单核苷酸多态性,但仅-511T＞C位点单核苷酸多态性与腰椎间盘疾病有关.     

IL-1β基因多态性与新疆维吾尔族原发性膝骨关节炎发病的关系研究

目的:研究白细胞介素-1β(IL-1β)基因多态性与新疆维吾尔族原发性膝骨关节炎(PKOA)发病的关系。方法:选择从2015年9月到2017年8月在我院就诊的新疆维吾尔族PKOA患者50例作为研究对象,记为观察组。另选同期在我院体检的新疆维吾尔族正常健康志愿者30例记为对照组,检测并对比两组血清IL-1β水平、IL-1β基因型频率的分布以及单体型的相关频率分布。结果:观察组的血清IL-1β水平明显高于对照组,差异有统计学意义(P0.05);且观察组患者中,以IL-1β+3954CT的血清IL-1β水平最高,为(173.28±65.19)pg/mL,其次为IL-1β-511CT,水平为(172.17±54.98)pg/mL,二者均高于对照组,差异均有统计学意义(均P0.05)。观察组IL-1β-511C/T的CT、IL-1β+3954C/T的CT、等位基因T的基因型频率均分别明显高于对照组,IL-1β+3954C/T的CC、等位基因C的基因型频率均分别明显低于对照组,差异均有统计学意义(均P0.05)。根据SNPstats法分析单体型后发现,IL-1β共有6类单体型,其中以TCC最为常见,但TCT及CCC型同PKOA的发病率具有明显相关性(OR=3.214、6.074,均P 0.05)。结论:IL-1β的基因多态性与新疆维吾尔族PKOA有关,临床主要表现为IL-1β-511C/T和IL-1β+3954C/T的CT基因型,且TCT及CCC单体型同PKOA的发病率联系紧密,通过监测IL-1β基因型,有助于更好地指导PKOA患者的治疗。     

白介素-1和肿瘤坏死因子-α基因多态性与幽门螺杆菌相关性胃十二指肠疾病的关系

目的探讨汉族人群中IL-1和TNF-α基因多态性与H.pylori相关性胃十二指肠疾病之间的关系。方法选取H.pylori阳性的142例胃十二指肠疾病患者和140例健康对照者,采用PCR-限制性长度片段多态方法检测该人群中IL-1B-511、TNF-A-308、TNF-A-857位点多态性和IL-1受体拮抗剂基因的多态性。结果 IL-1B-511和IL-1RN各基因型的频率在疾病组和对照组中的分布差异无统计学意义。在疾病组中TNF-A-308和TNF-A-857各基因型的频率与对照组比较,分布有差异,具有统计学意义(P0.05)。经Logistic回归分析,与携带TNF-A-308G/G者比较,携带TNF-A-308 A/A者发生胃十二指肠疾病的危险性为OR=15.37(95%CI:3.50-67.50);携带TNF-A-308 A/G者发生胃十二指肠疾病的危险性为OR=5.12(95%CI:2.54-10.34);与携带TNF-A-857 C/C者相比较,携带TNF-A-857 T/T者发生胃十二指肠疾病的危险性为OR=3.20(95%CI:1.35-7.60)。结论 IL-1B-511和IL-1RN各基因型与幽门螺杆菌相关性胃十二指肠疾病的发生不相关。TNF-α基因多态性与幽门螺杆菌相关性胃十二指肠疾病的发生相关。     

重庆市汉族健康人群白细胞介素-1基因多态性的研究

为了了解白细胞介素-I基因在中国重庆市汉族健康人群中的分布及其与不同种族比较的特点,采用了聚合酶链反应-限制性片段长度多态（PCR—RFLP）的方法,对140名重庆市汉族健康者的IL-1B-511基因多态性和IL-1RN第2内含子可变数目串联重复序列多态性进行检测,并结合相关文献进行了不同种族间的分析比较。结果表明重庆市汉族健康人群中1L-1B-511的各基因型频率为C/T型0．58、形,型0．50、C/C型0,32,与西班牙白种人相比,重庆地区汉族人IL-1B,B-511等位基因频率存在明显差异（P〈0．05）。1L-1RN的各基因型频率为1／1型0．93、1／2型0．05、1／4型0．01、4／4型0．01,与西班牙白种人及南非黑种人相比,重庆地区汉族人,IL-IRN等位基因频率存在明显差异（P〈0．05）。由此可以得出重庆地区汉族人群IL-1B-511位点存在C／T多态性和IL-1RN基因的第2号内含子存在可变数目串联重复序列多态性．其在不同种族间的分布存在着差异．     

白细胞介素一IB 基因多态性与胃癌发生的相关性研究

目的：探讨湖南衡阳地区白细胞介素-1B（IL-1B）基因多态性与胃癌的关系。方法：52例胃癌患者癌旁正常胃粘膜组织和55例慢性胃炎患者胃粘膜组织,应用聚合酶链反应-限制性片段长度多态性（PCR-RFLP）分析技术,进行基因型检测,并对C／C、忻进行测序,比较各基因型在胃癌组和胃炎组中的分布差异。结果：IL-1B-31T、IL-1B-511T等位基因和IL-1B-31T/T、IL-1B-511T／T基因型在胃癌组的分布频率高于胃炎组（P〈0．05）,OR值分别为I．97（95％CI=1．15-3．59）、2．52（95％CI=1．45-4．39）和2．71（95％CI=1,10-6．66）、3,33（95％CI=1．14-9．73）。结论：在湖南衡阳地区IL-1B-3lT／T、IL-1B-511T/T基因型与胃癌发病风险相关。     

IL-10基因多态性与子宫内膜异位症易感性的相关性研究

目的:探究白细胞介素-10(IL-10)基因多态性与子宫内膜异位症(EMs)易感性的相关性。方法:选取87例经病理组织学证实为EMs患者,对照组为100例健康女性,应用聚合酶链反应-限制性片段长度多态性(PCR-RFLP)分析方法,对两组妇女IL-10-1082、-819和-592位点的基因行多态性分析。结果:与对照组相比,EMs组-1082G/A位点等位基因及基因频率无差异(P0.05),-819 T/C和-592A/C位点等位基因或基因型频率较高(P0.05);与Ⅰ-Ⅱ期EMs患者相比,Ⅲ-Ⅳ期EMs患者-819T/C和-592A/C位点等位基因或基因型频率显著较高(P0.01)。结论:IL-10基因在-819T/C以及-592A/C位点的多态性与EMs的易感性有显著相关性。     

不明原因复发性自然流产夫妇MTHFR C677T位点多态性分析

目的：分析不明原因复发性自然流产（URSA）夫妇与亚甲基四氢叶酸还原酶基因C677T（MTHFR C677T）位点多态性的关 联性研究。方法：采用聚合酶链式反应- 限制性片段长度多态性( PCR-RFLP)对URSA 组和对照组各50 对夫妇的外周血进行 MTHFR C677T 的位点多态性进行检测分析。结果：URSA 组MTHFR 基因677 位点的T/T、C/T+T/T 基因型的发生频率显著高于 对照组,差异具有统计学意义(P<0.05),而对照组MTHFR 基因677 位点的C/C 基因型发生频率显著高于URSA 组（P<0.05）,两 组MTHFR 基因677 位点的C/T 基因型比较无明显差异（P>0.05)。另外URSA 组等位基因T 明显高于C 的频率,且URSA 组等 位基因T 发生频率显著高于对照组,对照组等位基因C 发生频率显著高于USRA 组,差异均具有统计学意义（P<0.05）。结论： MTHFR C677T 位点的多态性与URSA 的发生密切相关,是该病的重要遗传风险因素。     

中国北方汉族人群核呼吸因子-1基因+141G/T单核苷酸多态与冠心病发病的关联研究

目的:本研究旨在探讨IRF-1基因+141 G/T单核苷酸多态位点与中国北方汉族人群冠心病发病的相关关系。方法:本研究采用聚合酶链反应-限制性片段长度多态性对经过冠脉造影证实的冠状动脉有一条主要分支狭窄大于70%的675例冠心病患者和经过冠状动脉造影证实冠状动脉狭窄小于20%或完全正常的636例对照患者进行检验检,分析核呼吸因子IRF-1基因+141G/T单核苷酸多态位点的基因型和等位基因频率在两组间的分布情况。结果:核呼吸因子IRF-1基因+141 G/T单核苷酸多态位点三种基因型(GG型,GT型和TT型)在中国北方汉族人群冠心病组的分布频率分别为53.8%,36.2%和10.1%,在对照组的分布频率分别为45.6%,46.2%和8.2%,核呼吸因子IRF-1基因+141 G/T单核苷酸多态位点的基因型和等位基因频率分布在对照组和冠心病组之间存在统计学差异(P0.05)。Logistic回归分别校正冠心病的其他危险因素性别、年龄、体重指数、吸烟、高血压、高脂血症、糖尿病等后,核呼吸因子IRF-1基因+141 G/T单核苷酸多态位点与中国北方汉族人群的冠心病的发病存在相关关系(P0.05)。结论:核呼吸因子IRF-1基因+141 G/T单核苷酸多态与中国北方汉族人群冠心病的发病存在相关关系,IRF-1基因+141 G/T多态可能是中国北方汉族人群冠心病发病的独立危险因子。     

IL-18基因rs1946518位点多态性及血清IL-18水平与宫颈癌的关系

目的:研究白介素-18(IL-18)基因rs1946518多态性位点以及相应血清IL-18含量与宫颈癌的关系.方法:选择50例宫颈癌患者和50例健康对照为研究对象,采集外周静脉血,用直接测序法对IL-18基因启动子区rs1946518单核苷酸多态性(SNP)位点进行检测,并用双抗体夹心酶联免疫吸附试验(ELISA)检测血清中IL-18含量.结果:rs1946518 SNP位点以3种基因型存在,即A/A、C/C、A/C;患者组3种基因型频率分别为56%(28/50)、10%(5/50)和34%(17/50),对照组3种基因型频率分别为18%(9/50)、34%(17/50)和48%(17/50),2组间基因型的分布频率差异和等位基因A、C频率差异有统计学意义.采用析因设计方差分析显示2组间血清IL-18平均浓度差异有统计学意义;按照上述3个基因型分为3组,3组的血清IL-18平均浓度差异有统计学意义;宫颈癌患病与否与不同IL-18基因型之间交互效应显著.结论:IL-18基因启动子rs1946518位点多态性及相应血清IL-18含量都与宫颈癌相关,rs1946518位点多态性可能是控制宫颈癌发生发展的重要遗传因素.     

北方汉族人群白细胞介素-6基因-572C/G单核苷酸多态性与冠心病的相关性研究

目的:探讨中国北方汉族人群中白细胞介素-6(IL-6)基因启动子区-572C/G单核苷酸多态性与冠心病的关系。方法:采用聚合酶链反应-限制性片段长度多态性(PCR-RFLP)方法,检测434例冠心病(冠心病组)患者和417名非冠心病人(对照组)的IL-6基因型,探讨-572C/G单核苷酸多态与冠心病的关系。结果:IL-6基因-572C/G多态位点的CC、CG和GG基因型在冠心病组中分别为59.68%、37.09%、3.23%,等位基因频率C和G分别为78.23%、21.77%;在健康成年者中基因型分别为67.87%、30.22%、1.92%,等位基因频率C和G分别为82.97%、17.03%。IL-6基因-572C/G位点多态性在两组人群中的分布差异存在显著性(P<0.05);经Logsitic回归校正性别、年龄、体重指数、高血压病、糖尿病、高胆固醇血症及吸烟等冠心病易患因素后,IL-6基因-572C/G单核苷酸多态是冠心病发病的独立的危险因素(P<0.05);等位基因频率的相对风险分析发现,G等位基因携带者患冠心病的风险是C等位基因的1.356倍〔OR=1.356,95%CI=1.0648～1.7279〕。...     

Association analysis of monocyte chemotactic protein-3 (MCP3) polymorphisms with asthmatic phenotypes

The monocyte chemotactic protein-3 (MCP3), on chromosome 17q11.2-q12, is a secreted chemokine, which attracts macrophages during inflammation and metastasis. In an effort to discover additional polymorphism(s) in genes whose variant(s) have been implicated in asthma, we scrutinized the genetic polymorphisms in MCP3 to evaluate it as a potential candidate gene for asthma host genetic study. By direct DNA sequencing in twenty-four individuals, we identified four sequence variants within the 3 kb full genome including 1,000bp promoter region of MCP3; one in promoter region (-420T>C), three in intron (+136C>G, +563C>T, +984G>A) respectively. The frequencies of those four SNPs were 0.020 (-420T>C), 0.038 (+136C>G), 0.080 (+563C>T), 0.035 (+984G>A), respectively, in Korean population (n = 598). Haplotypes, their frequencies and linkage disequilibrium coefficients (|D'|) between SNP pairs were estimated. The associations with the risk of asthma, skin-test reactivity and total serum IgE levels were analyzed. Using statistical analyses for association of MCP3 polymorphisms with asthma development and asthma-related phenotypes, no significant signals were detected. In conclusion, we identified four genetic polymorphisms in the important MCP3 gene, but no significant associations of MCP3 variants with asthma phenotypes were detected. MCP3 variation/haplotype information identified in this study will provide valuable information for future association studies of other allergic diseases.     

Association of interleukin-1B (IL-1B) gene polymorphisms with risk of gastric cancer in Chinese population

The incidence of gastric cancer (GC) in China is among the highest in the world. In present work, 154 patients with GC and 166 healthy controls in population of north-western China were investigated to evaluate the genetic associations of IL-1B gene single nucleotide polymorphisms (SNP) and variable number tandem repeat (VNTR) polymorphisms of IL-1RN gene with increased risk of GC. The frequency of IL-1B+3954C/T was significantly higher in GC cases group (25.97%) than that in controls (4.82%) with odds ratio (OR)=6.93 (95% confidence interval [CI] 3.13-15.36); the frequencies of IL-1B-31C/T, IL-1B-31C/C and IL-1B-511C/T genotypes were also higher in GC cases group (51.95%, 23.38% and 50.65%) than those in controls (46.99%, 19.88% and 42.77%) with OR=1.48 (95% CI 0.88-2.49), OR=1.58 (95% CI 0.84-2.95) and OR=1.39 (95% CI 0.80-2.41), respectively. The results show that these SNPs of IL-1B gene are associated with significantly increased risk of GC. This is the first report that IL-1B+3954C/T heterozygote is associated with greatly increased risk of GC. The results of this study did not support the report that IL-1RN*2+ genotypes were associated with increased risk of GC in Chinese population.     

Interleukin 1-beta responses to bacterial toxins and sudden infant death syndrome

We tested the hypothesis that significantly higher IL-1beta responses to toxic shock syndrome toxin (TSST) noted for parents of sudden infant death syndrome (SIDS) infants might be due in part to genetic factors such as the IL-1beta (C-511T) and IL-1RN (T+2018C) single nucleotide polymorphisms (SNP). The first objective was to assess the distribution of these polymorphisms among SIDS infants, parents of SIDS infants and controls, and two ethnic groups: Aboriginal Australians who have a high incidence of SIDS; and Bangladeshis who in Britain have a low incidence of SIDS compared with Europeans. The second objective was to assess IL-1beta responses to endotoxin and toxic shock syndrome toxin (TSST) from leukocytes of smokers and non-smokers in relation to these polymorphisms. There were major differences in the distributions of the IL-1beta (C-511T) SNP between Europeans and Bangladeshis (p=0.00) and between Europeans and Aboriginal Australians (p=0.00); however, they were similar for the Bangladeshi and Aboriginal Australian subjects. The allele frequency distribution of the IL-1RN (T+2018C) SNP for the Aboriginal Australians was statistically different from the European group (p=0.00), but it was not different from the Bangladeshi group (p=0.09). Compared with controls of European origin, there were no significant differences in the distribution of these polymorphisms among SIDS infants or parents of SIDS infants. For the IL-1beta (C-511T) SNP, the highest IL-1beta responses to endotoxin were obtained with leukocytes of non-smokers with the heterozygous CT genotype. Smokers had significantly lower levels of IL-1beta in response to endotoxin (p=0.01) and these differences were significant for donors with the wild type CC (p=0.00) and CT (p=0.03) genotypes. Similar patterns were observed for IL-1beta responses to TSST, but the differences were not significant. For the IL-1RN (T+2018C) SNP, the highest IL-1beta responses to endotoxin were obtained with leukocytes from non-smoker donors with the wildtype TT genotype and significantly lower responses were found with leukocytes from donors with the TC genotype (p=0.02). The responses of smokers were lower but the differences were significant only for donors with the TT genotype (p=0.00). Similar patterns were observed for IL-1beta responses to TSST, but the differences were not significant. IL-1beta responses to both endotoxin and TSST were increased for the small number of smokers with the TT genotype of the IL-1beta (C-511T) SNP. The TT genotype of the IL-1beta (C-511T) was found predominantly among Aboriginal Australian and Bangladeshi individuals but only a small proportion of Europeans. Smokers with the AA genotype of the IL-10 (G-1082A) SNP which is found predominantly among these two groups had significantly lower levels of IL-10 responses. If cigarette smoke enhances pro-inflammatory responses and reduces anti-inflammatory responses in individuals with these genotypes, this might partly explain the increased susceptibility of Aboriginal Australian infants to infections and SIDS.     

Association analysis of interleukin gene polymorphisms in autoimmune thyroid diseases in the Tunisian population

Autoimmune thyroid diseases (AITDs), including Graves' disease (GD) and autoimmune hypothyroidism (AH), are inherited as complex traits. Among the genes contributing to AITDs susceptibility are genes of the IL-1 family. IL-1 regulates T and B lymphocyte maturation, including the induction of several cytokines and cytokine receptors. Therefore, disturbances of this balance may not only play a role in inflammation but also in the pathogenesis of autoimmunity. In order to investigate genetic association of IL-1 gene polymorphisms with AITDs, we performed both a familial study in a large Tunisian pedigree with high prevalence of AITDs (64 patients and 176 controls), and a case-control study (131 GD unrelated patients and 225 healthy controls). PCR and PCR-RFLP methods were used to analyse respectively a VNTR in the IL-1RN gene and three SNPs in both IL-1B genes (-511 C/T and +3954 C/T) and IL-1A (-889 C/T). The family-based association study showed an association of the IL-1B+3954 C/T polymorphism (p=0.02) and two haplotypes IL-1RN*3/C/T/T and IL-1RN*1/C/T/T (p=0.009 and p=0.047 respectively) with AITDs. The case-control study is the first study revealing a significant association of the IL-1A-889 C/T polymorphism (chi2=10.23; p=0.0014) with susceptibility to GD. Our data suggest that the IL-1 gene cluster may harbour susceptibility genes for AITDs and GD pathogenesis in the Tunisian population.     

IL-1β (−511T/C) gene polymorphism not IL-1β (+3953T/C) and LT-α (+252A/G) gene variants confers susceptibility to visceral leishmaniasis

Lymphotoxin-α (LT-α) and interleukin-1beta (IL-1β) are proinflammatory cytokines playing important roles in immunity against Leishmania infection and the outcome of the disease. As cytokine productions are under the genetic control, this study tried to find any probable relationship between these cytokine gene polymorphisms and the susceptibility to visceral leishmaniasis in Iranian pediatric patients. Ninety-five pediatric patients involved with visceral leishmaniasis and 128 non-relative healthy people, from the same area as the patients, were genotyped for LT-α (+252A/G) and IL-1β (+3953T/C and −511T/C) gene polymorphisms using polymerase chain reaction-restriction fragment length polymorphism (PCR–RFLP). There was not found any significant differences in allele and genotype frequencies of LT-α (+252A/G) and IL-1β (+3953) among the study groups. However, the frequency of IL-1β −511TT genotype was higher in the controls (P = 0.0004) while the frequency of IL-1β −511CC genotype and C allele were higher in the patients (P = 0.008 and P = 0.00006, respectively). Furthermore, IL-1β CC (−511/+3953) haplotype was more frequent in VL patients compared with the controls (P = 0.0002) and the distribution of TT haplotype was higher in the controls compared with the patients (P = 0.003). In conclusion, based on the results, IL-1β −511C allele, CC genotype and CC (−511/+3953) haplotype could be considered as the susceptibility factors for visceral leishmaniasis while IL-1β −511TT genotype, T allele and TT haplotype (−511/+3953) might be counted as the influential factors for resistance to the disease.     

Interleukin-10 promoter polymorphisms associated with susceptibility to lumbar disc degeneration in a Chinese cohort

We investigated a possible association between interleukin (IL)-10 single nucleotide polymorphisms (SNPs) and susceptibility to and severity of lumbar disc degeneration (LDD) in a Chinese cohort of 320 patients with LDD and 269 gender- and age-matched controls. The degree of disc degeneration was determined by magnetic resonance imaging using Schneiderman's classification. Genetic analysis of IL-10 promoter polymorphisms (at -1082 A/G, -819 T/C, and -592 A/C) was carried out by PCR-RFLP. A total of 134 herniated lumbar intervertebral discs were collected during surgery for IL-10 mRNA detection. For SNPs at -592, the A allele and AA genotype frequencies were significantly higher in LDD patients than in controls. Similarly, the AA genotype and A allele frequencies at -1082 were significantly higher in cases than in controls. Among the LDD subjects, carriers of AA at -592 and GG at -1082 had significantly lower mean IL-10 mRNA expression than the other two genotypes. The SNPs at each locus were not significantly associated with severity grade in the LDD patients. Logistic regression analyses showed that the AA at -1082, AA at -592, and IL-10 mRNA expression level were independent risk factors for LDD. We conclude that the IL-10 SNPs at -1082 A/G and -592 A/C as well as IL-10 mRNA in the herniated lumbar intervertebral discs are associated with susceptibility to LDD in this Chinese cohort, but not with disease severity.     

Interleukin 1B gene polymorphism is associated with baseline C-reactive protein levels in healthy individuals

C-reactive protein (CRP) is a sensitive marker of inflammation induced by both IL-6 and IL-1. Thus, genetic variation in these genes could be associated with the variety in C-reactive protein levels, and therefore with the severity of the entire inflammatory response. Even a subtle elevation in baseline CRP levels in healthy individuals has been found to significantly increase the risk for cardiovascular diseases. Therefore, to find out the possible role of pro-inflammatory cytokines in CRP baseline regulation we conducted a study of 338 healthy blood donors whose CRP levels were determined and whose single nucleotide polymorphisms of IL1A(C/T)-889, IL1B(C/T)-511, IL1B(C/T) + 3954, IL6(G/C)-174 and ILRN (a VNTR) both genotyped and haplotyped. The data revealed an association between CRP levels and the IL1B + 3954 genotype. Also, the bilocus haplotype IL1B-511*1/IL1B + 3954*2 was more frequent in subjects with below median CRP levels (< 0.72 mg/l), and composite genotype analysis of IL1B-511/IL1B + 3954 supported this finding. Our findings suggest that in healthy people, basal CRP levels are regulated by IL1B but not by IL6 genetics.     

Influence of the APOA5 locus on plasma triglyceride, lipoprotein subclasses, and CVD risk in the Framingham Heart Study

Several polymorphisms in the APOA5 gene have been associated with increased plasma triglyceride (TG) concentrations. However, associations between APOA5 and lipoprotein subclasses, remnant-like particles (RLPs), and cardiovascular disease (CVD) risk have been less explored. We investigated associations of five APOA5 single-nucleotide polymorphisms (SNPs; -1131T>C, -3A>G, 56C>G IVS3+ 476G>A, and 1259T>C) with lipoprotein subfractions and CVD risk in 1,129 men and 1,262 women participating in the Framingham Heart Study. Except for the 56C>G SNP, the other SNPs were in significant linkage disequilibria, resulting in three haplotypes (11111, 22122, and 11211) representing 98% of the population. SNP analyses revealed that the -1131T>C and 56C>G SNPs were significantly associated with higher plasma TG concentrations in both men and women. For RLP and lipoprotein subclasses, we observed gender-specific association for the -1131T>C and 56C>G SNPs. Female carriers of the -1131C allele had higher RLP concentrations, whereas in males, significant associations for RLPs were observed for the 56G allele. Moreover, haplotype analyses confirmed these findings and revealed that the 22122 and 11211 haplotypes exhibited different associations with HDL cholesterol concentrations. In women, the -1131C allele was associated with a higher hazard ratio for CVD (1.85; 95% confidence interval, 1.03-3.34; P = 0.04), in agreement with the association of this SNP with higher RLPs.     

Polymorphisms of TNFalpha, IL1beta, and IL1RN genes in chronic obstructive pulmonary disease

It is recognized that genetic factors play a role in the susceptibility to COPD. COPD is characterized by airflow limitation. Chronic inflammation causes small airway disease and parenchymal destruction, leading to the airflow limitation. Polymorphisms in pro-inflammatory cytokine genes may confer a risk for the development of COPD. A case-control association study was performed in Japanese population (88 COPD patients and 61 controls) and Egyptian population (106 patients and 72 controls). Genotype and allele frequencies of the TNFalpha -308 G/A and +489 G/A polymorphisms, the IL1beta -511 C/T, -31 T/C, and +3954 C/T polymorphisms, and a VNTR polymorphism in intron 2 of the IL1RN gene were investigated. In addition, pairwise haplotype frequencies were analyzed. When studied independently, none of the polymorphisms were associated with the development of COPD in both populations. However, in the Egyptian population, the distributions of the haplotype (IL1beta -31 T/C : IL1beta +3954 C/T) were significantly different between the COPD patients and the controls (p(corr)=0.0037). Our findings suggest that this haplotype within the IL1beta gene may be involved in the pathogenesis of COPD and that the genetic factors of COPD susceptibility might be different between different populations.     

Genetic variation in pro-inflammatory cytokines (interleukin-1beta, interleukin-1alpha and interleukin-6) associated with the aggressive forms, survival, and relapse prediction of breast carcinoma

OBJECTIVES: Interleukin-1 (IL-1) and interleukin-6 (IL-6) are determining factors in the immune and inflammatory responses to tumors cells. Experimental data suggest that interleukin-1 and interleukin-6 play important roles in the development and progression of breast cancer. We designed a broad study to investigate the susceptibility and prognostic implications of the genetic variation in IL-1alpha, IL-1beta and IL-6 in breast carcinoma. EXPERIMENTAL DESIGN: We used the polymerase chain reaction and restriction enzyme digestion to characterize the genetic variation of IL-1alpha, IL-1beta and IL-6 in 305, unrelated Tunisian patients with breast carcinoma and 200 healthy control subjects. Associations between the genetic markers and the clinicopathological parameters, the specific overall survival rate (OVS) of breast carcinoma and the disease free-survival rate (DFS) were assessed using univariate and multivariate analyses. RESULTS: Both IL-6 (-597) GA and IL-6 (-174) GC heterozygous genotypes were found to be significantly associated with breast carcinoma (OR = 1.59, p = 0.024 and OR = 1.61, p = 0.022 respectively). A highly significant association was found between the (+3954) T allele of IL1-B gene and the aggressive phenotype of breast carcinoma as defined by the high histological grade, axillary lymph node metastasis and large tumor size. The IL-1alpha (-889) TT homozygous genotype showed a significant association with reduced disease-free survival and/or overall survival rate. The IL-1beta (+3954) TT, IL-6 (-597) GG and IL-6 (-174) GG homozygous genotypes were found to be associated with reduced DFS but not with overall survival. CONCLUSIONS: The polymorphisms in the promoter region of the IL-6 gene may represent a marker for the increased risk of breast carcinoma. Genetic variations in IL-1alpha, IL-1beta and IL-6 may predict the clinical outcome of breast carcinoma.