龙凤湿地与珰奈湿地底泥细菌古菌多样性及其对环境因子的响应

【背景】城市湿地和天然湿地受到人为扰动影响的程度显著不同。【目的】研究2种不同类型湿地底泥微生物多样性及种类的差异。【方法】采集冬夏两季城市湿地(龙凤湿地)和天然湿地(珰奈湿地)的底泥样品,使用16S rRNA基因测序技术测定底泥中细菌和古菌群落结构,分析2种湿地底泥的细菌、古菌差异及环境因素与微生物的相关性。【结果】龙凤湿地底泥中的硫杆菌属(Thiobacillus)、芽孢杆菌属(Bacillus)和鞘氨醇单胞菌属(Sphingomonas)丰度显著高于珰奈湿地(P<0.05);Methanoregula在珰奈湿地底泥中的丰度高于龙凤湿地;冬季厌氧绳菌属(Anaerolinea)和甲烷八叠球菌属(Methanosarcina)在珰奈湿地底泥中的丰度显著高于龙凤湿地(P<0.05)。【结论】龙凤湿地与珰奈湿地的差异主要影响湿地底泥中参与元素循环的细菌和产甲烷古菌的丰度,人为干扰和低温会降低湿地中微生物的多样性,pH、盐分和碱性磷酸酶是显著影响微生物多样性的环境因素。     

闽江口芦苇沼泽湿地土壤产甲烷菌群落结构的垂直分布

应用PCR-RFLP技术及测序分析对闽江口芦苇湿地土壤产甲烷菌群落结构的垂直分布特征进行了研究。在构建的6个克隆文库中,每个克隆文库随机挑选100个克隆进行菌落PCR验证,共得到591个阳性克隆。PCR产物经限制性内切酶MspⅠ进行RFLP分析后得到37个不同的分类操作单元(OTUs)。对37个克隆子进行了序列测定,与GenBank数据库中的序列进行比对,最近相似性在91%—99%之间。RFLP分析和系统发育分析表明,闽江口芦苇湿地土壤中产甲烷菌群落包括3大类群:甲烷杆菌目(Methanobacteriales)、甲烷微菌目(Methanomirobiales)和甲烷八叠球菌目(Methanosarcinales)。不同土壤深度中产甲烷菌群落的分布呈现出不同的特征。土壤表层(0—10 cm)优势产甲烷菌类群为Methanoregula,约占76%;10—20 cm土层主要的产甲烷菌类群为Methanolinea和Methanoregula,分别约占23%和29%;20—30cm土层优势的产甲烷菌类群为Methanolinea,约占66%。Shannon指数(H’)和Simpson多样性指教(D)表明,10—20cm土层产甲烷菌多样性高于土壤表层(0—10 cm)和20—30 cm土层。37个测序OTUs中有26个OTUs属于不可培养的产甲烷菌序列,表明闽江口芦苇湿地土壤中存在大量不可培养的产甲烷菌。     

Methane dynamics across wetland plant species

We examined patterns of methane flux, plant biomass, and microbial methanogenic populations in nine wetland plant species. Methane dynamics varied across plant functional groupings, with patterns distinctive among forbs, clonal dominants, and tussock/clump-forming graminoids. Carex stricta and Scirpus atrovirens showed the highest emissions (31.7 and 20.6 mg CH₄-C m⁻² h⁻¹), followed by other tussock- or clump-forming graminoids that averaged 11.0 mg CH₄-C m⁻² h⁻¹ (Scirpus cyperinus, Glyceria striata, and Juncus effusus). The clonal dominants (Phalaris arundinacea and Typha angustifolia) had the lowest methane emissions (1.3 and 3.4 mg CH₄-C m⁻² h⁻¹) of all seven graminoid species, and the forbs (Mimulus ringens and Verbena hastata) emitted no detectable methane flux from their leaves. In general, methane emissions decreased with greater plant biomass. Terminal restriction fragment analysis (T-RFLP) of archaeal 16S rRNA revealed that the structure of the soil methanogen communities isolated from plant rhizospheres had no effect on methane flux. The relative proportions of the different terminal fragments were not correlated with either methane emissions or plant biomass. Methanogen populations from J. effusus soils were dominated by acetoclastic archaea of the Methanosarcinaceae and Methanosaetaceae families, while all other graminoid soils were colonized primarily by hydrogenotrophic archaea of the Methanobacteriaceae family. The results indicate that plant functional groups and plant biomass are useful in predicting methane flux differences across plant species, while soil methanogen community structure showed no distinguishable patterns.     

Differences exist in bird communities using restored and natural wetlands in the Parkland region,Alberta, Canada

Wetland restoration is used to compensate for historic and ongoing wetland losses. We compared bird community composition in 24 restored wetlands and 36 natural wetlands in the Parkland region of Alberta. Natural wetlands ranged in exposure to agricultural activity and were binned into three classes (low, medium, and high disturbance). Although the abundance and average species richness of birds were similar between restored and natural wetlands (analysis of variance: p > 0.22), the avian community composition differed significantly among wetland types (multiresponse permutation procedure [MRPP]: A = 0.05, p < 0.001). The avifauna using restored wetlands was distinct from the avifauna using natural wetlands spanning a range of disturbance levels (A = 0.02–0.06; p ≤ 0.006). Notably, restored wetlands were surrounded by less shrub/forest cover and more open water than low‐disturbance, natural wetlands. The majority (58%) of species using the surveyed wetlands were not classified as wetland‐dependent. Interestingly, if only wetland‐dependent species are considered, the avifauna using restored wetlands is no longer distinctive (MRPP: A < 0.01, p = 0.187), although the abundance of wetland‐dependent birds was marginally higher in restored wetlands (n = 24) than in low‐disturbance, natural wetlands (n = 10; Tukey's honestly significant difference test: p = 0.041). Overall, restored wetlands had reduced beta diversity compared to natural wetlands, regardless of whether the avifauna were restricted to wetland‐dependent species or considered comprehensively. This draws into question the legitimacy of the assumption that restoration can fully offset continued losses of natural wetlands.     

Characteristics and metabolic patterns of soil methanogenic archaea communities in the high‐latitude natural forested wetlands of China

Soil methanogenic microorganisms are one of the primary methane‐producing microbes in wetlands. However, we still poorly understand the community characteristic and metabolic patterns of these microorganisms according to vegetation type and seasonal changes. Therefore, to better elucidate the effects of the vegetation type and seasonal factors on the methanogenic community structure and metabolic patterns, we detected the characteristics of the soil methanogenic mcrA gene from three types of natural wetlands in different seasons in the Xiaoxing''an Mountain region, China. The results indicated that the distribution of Methanobacteriaceae (hydrogenotrophic methanogens) was higher in winter, while Methanosarcinaceae and Methanosaetaceae accounted for a higher proportion in summer. Hydrogenotrophic methanogenesis was the dominant trophic pattern in each wetland. The results of principal coordinate analysis and cluster analysis showed that the vegetation type considerably influenced the methanogenic community composition. The methanogenic community structure in the Betula platyphylla–Larix gmelinii wetland was relatively different from the structure of the other two wetland types. Indicator species analysis further demonstrated that the corresponding species of indicator operational taxonomic units from the Alnus sibirica wetland and the Betula ovalifolia wetland were similar. Network analysis showed that cooperative and competitive relationships exist both within and between the same or different trophic methanogens. The core methanogens with higher abundance in each wetland were conducive to the adaptation to environmental disturbances. This information is crucial for the assessment of metabolic patterns of soil methanogenic archaea and future fluxes in the wetlands of the Xiaoxing''an Mountain region given their vulnerability.     

鄱阳湖苔草湿地甲烷释放特征

2009年5月-2010年4月在鄱阳湖南矶湿地国家级自然保护区选择以灰化苔草为建群种的洲滩,设置土壤-植物系统(TC)、剪除植物地上部分 (TJ)2个试验处理,利用密闭箱-气相色谱法测定了鄱阳湖典型苔草湿地的甲烷(CH₄)释放通量。结果表明:1)TC、TJ 2个试验处理CH₄释放速率变化范围分别为-0.094-17.75 mg · m^-2 · h^-1、-0.122-19.16 mg · m^-2 · h^-1,均表现出明显的季节变化规律;2)地表未淹水期间,剪草处理CH₄释放显著高于非剪草处理(t=2.69, P<0.05);地表淹水达到15 cm后,剪草处理CH₄释放明显低于非剪草处理。3)土壤5 cm温度、土壤水分与2处理非淹水期间CH₄释放速率均呈显著正相关,是非淹水期间CH₄通量变化的主要控制因子,2因子能够共同解释非淹水期苔草湿地65%-74%的CH₄通量变异;4)试验期间,苔草湿地CH₄释放量约为12.77 gC/m²,相当于同期土壤有机质分解碳排放量的4%,甲烷释放的碳消耗不足苔草湿地年NPP的1%。     

鄱阳湖湿地景观恢复的物种选择及其对环境因子的响应

湿地是重要的生态系统,对人类和野生生物都具有极其重要的价值。由于自然因素的变化和人类活动的干扰,湿地退化严重。近年来,湿地恢复已成为世界环境问题改善的重要工具之一。选择适用的湿地植物是退化湿地恢复的关键途径。本文以鄱阳湖湿地为研究对象,通过专家赋值、野外调查、定位观测等方法,筛选了苦草、野菱、芦苇、苔草等25种鄱阳湖常见植物作为湿地景观恢复的优先物种。对苦草、黑藻、菹草、菖蒲、芦苇等5种植物对环境因子的响应进行观测。结果表明,苦草在清水环境130-140cm处的生长最好;黑藻在清水环境中100-110cm处的生长最好;菹草在不同水深(50-160cm)下都能够生长,菹草高度随水深增加而增加;菖蒲具有一定的耐淹能力(< 80cm),但完全淹水(水深100-120cm)明显影响到菖蒲根状茎萌发、幼苗生长和生物量的积累;芦苇根状茎萌发对水深要求严格,土壤要湿润且透气性良好才是芦苇萌发的最好条件,芦苇根状茎萌发前淹水超过20 cm其萌发将会受到明显抑制,淹水超过30 cm则无法萌发。通过对沉水植物的透明度研究表明,植物对水质的透明度都有一定的要求,透明度较好更利于湿地植物的生长发育。     

农田开垦对三江平原湿地土壤种子库影响及湿地恢复潜力

种子库是湿地植被恢复的重要途径之一,不同时期的耕作土壤中残留的种子对开垦湿地恢复具有重要的作用.本文采用温室萌发法在两种水分条件下对三江平原天然湿地、不同开垦年限湿地种子库结构和规模进行了研究,以了解不同开垦年限湿地种子库特征及其在湿地植被恢复中的潜力.本次实验共萌发物种50种,随着开垦年限增加,萌发物种逐渐减少,天然湿地、开垦1年、3年、10年、20年的湿地分别为34种、31种、21种、21种和8种,萌发物种数与种子库规模均表现出极显著差异(F1=8.32,F2=5.946,P＜0.001).种子库密度以天然湿地和开垦1年湿地最大,分别为7624粒/m2,9836粒/m2.随着开垦年限增加,种子库规模逐渐减小,开垦3年、10年种子库密度为4336粒/m2,4872粒/m2.开垦20 a后,显著减少为432粒/m2.湿润条件下萌发物种数及种子密度显著高于淹水处理,种子库具有明显的分层现象,0-5 cm土层种子库规模显著高于5-10 cm.小叶章(Calamagrostis angustifolia)作为该地区优势物种,由最初的1192粒/m2,经过20 a开垦后在种子库中消失.研究表明,在一定的开垦年限范围内,开垦湿地土壤中仍然保留大量的湿地物种种子,在湿地恢复中具有重要的作用.     

Assessing the impact of rumen microbial communities on methane emissions and production traits in Holstein cows in a tropical climate

The evaluation of how the gut microbiota affects both methane emissions and animal production is necessary in order to achieve methane mitigation without production losses. Toward this goal, the aim of this study was to correlate the rumen microbial communities (bacteria, archaea, and fungi) of high (HP), medium (MP), and low milk producing (LP), as well as dry (DC), Holstein dairy cows in an actual tropical production system with methane emissions and animal production traits. Overall, DC cows emitted more methane, followed by MP, HP and LP cows, although HP and LP cow emissions were similar. Using next-generation sequencing, it was found that bacteria affiliated with Christensenellaceae, Mogibacteriaceae, S24-7, Butyrivibrio, Schwartzia, and Treponema were negatively correlated with methane emissions and showed positive correlations with digestible dry matter intake (dDMI) and digestible organic matter intake (dOMI). Similar findings were observed for archaea in the genus Methanosphaera. The bacterial groups Coriobacteriaceae, RFP12, and Clostridium were negatively correlated with methane, but did not correlate with dDMI and dOMI. For anaerobic fungal communities, no significant correlations with methane or animal production traits were found. Based on these findings, it is suggested that manipulation of the abundances of these microbial taxa may be useful for modulating methane emissions without negatively affecting animal production.     

Metagenomic Profiling of Antibiotic Resistance Genes and Mobile Genetic Elements in a Tannery Wastewater Treatment Plant

Antibiotics are often used to prevent sickness and improve production in animal agriculture, and the residues in animal bodies may enter tannery wastewater during leather production. This study aimed to use Illumina high-throughput sequencing to investigate the occurrence, diversity and abundance of antibiotic resistance genes (ARGs) and mobile genetic elements (MGEs) in aerobic and anaerobic sludge of a full-scale tannery wastewater treatment plant (WWTP). Metagenomic analysis showed that Proteobacteria, Firmicutes, Bacteroidetes and Actinobacteria dominated in the WWTP, but the relative abundance of archaea in anaerobic sludge was higher than in aerobic sludge. Sequencing reads from aerobic and anaerobic sludge revealed differences in the abundance of functional genes between both microbial communities. Genes coding for antibiotic resistance were identified in both communities. BLAST analysis against Antibiotic Resistance Genes Database (ARDB) further revealed that aerobic and anaerobic sludge contained various ARGs with high abundance, among which sulfonamide resistance gene sul1 had the highest abundance, occupying over 20% of the total ARGs reads. Tetracycline resistance genes (tet) were highly rich in the anaerobic sludge, among which tet33 had the highest abundance, but was absent in aerobic sludge. Over 70 types of insertion sequences were detected in each sludge sample, and class 1 integrase genes were prevalent in the WWTP. The results highlighted prevalence of ARGs and MGEs in tannery WWTPs, which may deserve more public health concerns.     

内陆湿地与水体甲烷厌氧氧化功能微生物研究进展

内陆湿地与水体(如湖泊、河流、水库等)是温室气体甲烷的重要排放源。微生物介导的甲烷厌氧氧化(anaerobic oxidation of methane,AOM)反应在控制内陆湿地与水体甲烷排放中起着不可忽视的作用,对缓解全球温室效应具有重要意义。内陆湿地与水体易形成缺氧环境,且电子受体的种类和数量繁多,是发生AOM反应的理想生境。近年来,不断有研究表明,内陆湿地与水体中存在多种电子受体(NO₂^-、NO₃^-、SO₄^2-、Fe (III)等)驱动的AOM途径。NC10门细菌和甲烷厌氧氧化古菌(anaerobic methanotrophic archaea,ANME)的一新分支ANME-2d主导了湿地和水体环境中的AOM反应,其中ANME-2d具有根据环境条件选择不同电子受体的潜力。研究系统综述了内陆湿地与水体中不同电子受体驱动的AOM途径及其参与的主要功能微生物类群;分析了AOM反应在控制温室气体甲烷排放中的作用及其环境影响因素;总结了相关功能微生物的分子生物学检测方法及甲烷厌氧氧化活性测定的同位素示踪技术。最后,对未来相关研究方向进行了展望。     

莫莫格扁秆藨草恢复湿地土壤种子库对长芒稗入侵的响应

湿地恢复过程中,时常有外来种或本地杂草入侵。土壤种子库作为未来植被的潜在种源,对湿地恢复效果具有重要的指示意义。在莫莫格国家级自然保护区,以恢复白鹤栖息地(扁秆藨草(Scirpus planiculmis)沼泽)为目的,进行了退化湿地的水文恢复;但退化湿地恢复2a后,一年生杂草长芒稗(Echinochloa caudata)在大部分区域成为建群种。以长芒稗入侵湿地和扁秆藨草自然湿地为研究对象,对比分析了长芒稗和扁秆藨草的土壤种子库及生长结实特征。结果表明,在自然湿地扁秆藨草种子库规模是长芒稗的18.42倍,而在恢复湿地长芒稗种子库大小是扁秆藨草的5.04倍。与自然湿地相比,扁秆藨草种子库密度在入侵湿地明显减少,但仍保留了一定量具有活力的种子(664.32±105.98)粒/m~2,这与研究区扁秆藨草较高的种子生产力(9210.4±1513.4)粒/m~2及种子较强的浮力(FP50=39.7d)有关,说明扁秆藨草具备通过种子库或水传播恢复的潜力。长芒稗土壤种子库密度在入侵湿地高达(3345.9±520.3)粒/m~2,明显高于自然湿地种子库规模(P0.01),说明恢复湿地受长芒稗入侵影响严重,这与长芒稗较高的种子生产力(7621.4±376.25)粒/m~2及较弱的种子浮力(FP0=5d)有关,同时也表明长芒稗通过水传播扩散的能力较弱。另外,研究区长芒稗平均高度超过1m,且盖度较大,不仅阻碍扁秆藨草种子的水播,也降低了到达地表的光照水平,从而抑制扁秆藨草更新。因此,在莫莫格受长芒稗入侵湿地,于开花结实前收获长芒稗地上植物体及凋落物应是限制长芒稗扩展、同时促进扁秆藨草恢复的有效措施。     

内蒙古高原典型草原区河漫滩湿地植物群落退化表征

草原区河流河漫滩草甸是生物多样性表现最充分和生物生产力最高的地段, 但由于过度放牧利用, 绝大部分草甸处于退化状态。该文以锡林河流域中游的河漫滩草甸为研究对象, 比较分析了围封保育湿地与放牧退化湿地的群落组成、地上生物量, 以及共有植物种的植株高度、节间长、叶长、叶宽, 土壤含水量、容重, 群落地下根量及根的分布, 土壤微生物生物量碳、氮的变化。结果表明: 1)放牧使得湿地植物群落优势种发生变化, 原有湿生植物逐渐向旱生化转变, 同时地上及地下生物量明显降低。2)退化湿地的植物呈现显著小型化现象。3)放牧退化湿地的土壤含水量较围封保育湿地低, 其垂直分布及地下根的垂直分布也发生变化。在低河漫滩, 土壤水分随土层的增加而增加, 根量也趋于深层化。但在高河漫滩湿地, 土壤含水量接近典型草原, 根未出现深层化分布趋势。4)放牧践踏引起土壤容重和土壤紧实度增加。5)放牧使得低河漫滩湿地土壤微生物生物量增加, 而在过渡区及高河漫滩湿地, 放牧使得土壤微生物生物量碳、氮含量显著降低。     

筑坝扩容下高原湿地拉市海植物群落分布格局及其变化

基于遥感与地理信息系统技术、结合实地调查与验证,对高原湿地拉市海筑坝扩容13a来湿地植物群落类型、物种组成、空间分布格局进行研究,对比分析筑坝扩容前后植物群落变化特征。结果表明,拉市海当前分布有水葱 (Scirpus tabernaemontani)、两栖蓼 (Polygonum amphibium) 等2个挺水植物群落,鸭子草 (Potamogeton tepperi)、菱 (Trapa bispinosa)等2个浮叶植物群落,穗状狐尾藻 (Myriophyllum spicatum)、篦齿眼子菜 (Potamogeton pectinatus)、菹草 (Potamogeton crispus)、穿叶眼子草 (Potamogeton perfoliatus)、小叶眼子菜 (Potamogeton pusillns)等5个沉水植物群落,草甸植被分布于湖周。湿地植物物种共计61种,隶属于25科、48属,物种丰富度随沉水→浮叶→挺水→草甸逐渐增加。沉水植物群落分布面积最大(615.08 hm²),其次是草甸(214.60 hm²)、浮叶植物群落(140.01 hm²),挺水植物群落分布面积最小 (9.34 hm²),群落垂直层次随沉水→浮叶→挺水呈复杂化的趋势。筑坝13a来,拉市海植物群落类型从单一的沉水型植物群落发展成为由沉水、浮叶、挺水型组成的、水平空间多样化配置的湿地植被系统,其中穗状狐尾藻、篦齿眼子菜、小眼子菜等植物群落在筑坝蓄水13a后没有发生演替得以保留,而扇叶水毛茛(Butrachium bungei)、马来眼子菜(Potamogeton malaianus)和轮藻(Chara spp.)群落发生演替而消失。研究掌握了筑坝扩容下拉市海湿地植物群落分布格局及其变化特征,为科学评估筑坝蓄水对湿地生态系统的影响提供了基础性数据,同时也为水文改变下高原湿地生态系统的保护、管理以及资源可持续利用提供了一定的理论依据。     

Net Ecosystem Production and Carbon Greenhouse Gas Fluxes in Three Prairie Wetlands

In central North America, prairie wetlands provide many important ecosystem services including attenuating floods, improving water quality, and supporting biodiversity. However, over half of these wetlands have been drained for agriculture. Relatively little is known about the functioning of these ecosystems either in their natural state or restored after drainage. We characterized net ecosystem production and carbon greenhouse gas (GHG) fluxes (carbon dioxide [CO₂] and methane) in the open-water zones of three prairie wetlands over two ice-free seasons. These wetlands included a natural site and sites restored 3 and 14 years prior to study (hereafter “recently restored” and “older restored”). We also assessed how two techniques for estimating metabolic status, the diel oxygen method (used to measure NEP) and net CO₂ fluxes, compared. The diel oxygen method suggested that the restored wetlands were net heterotrophic across years, whereas the natural wetland was net heterotrophic in 1 year and net autotrophic in the other. Similar conclusions arose from quantifying net CO₂ fluxes, although this technique proved to be relatively insensitive for understanding metabolic status at a daily temporal scale owing to the influence of geochemical processes on CO₂ concentrations. GHG efflux was greatest from the recently restored wetland, followed by the older restored and natural wetlands. Overall, GHG flux rates were high and variable compared with other inland aquatic ecosystems. Although restoration may progressively return wetland functioning to near-natural states, our results highlight the necessity of preventing wetland drainage in the first place to preserve ecosystem functions and services.     

Seasonal effects of 19 plant species on COD removal in subsurface treatment wetland microcosms

Plants have many well-documented influences in treatment wetlands, but differences in individual species’ effects on year-round and seasonal performance are poorly understood. In this study, we evaluated plant effects on seasonal patterns of organic carbon removal (measured as COD) and sulfate concentration (used as an indicator of rootzone oxidation) in replicated, batch-loaded, greenhouse microcosms simulating subsurface treatment wetlands. Microcosms were planted with monocultures of 19 plant species or left unplanted as controls, dosed every 20 days with synthetic secondary wastewater, and operated over 20 months at temperatures from 4 to 24 °C. Study-long COD removal averaged 70% for controls and 70-97% for individual species. Most species enhanced COD removal significantly and the benefits of plants were greatest at 4-8 °C because COD removal decreased at low temperatures in controls but displayed limited seasonal variation in planted microcosms. Removal was significantly better at 24 °C than 4 °C with two species (Panicum virgatum and Leymus cinereus), significantly poorer with two species (Carex utriculata and Phalaris arundinacea), and did not differ with 15 species. Only one species showed a significant positive correlation between temperature and COD removal (Iris missouriensis, r = 0.67), while two species showed significant negative correlations (better when colder: Carex nebrascensis, r = −0.67; C. utriculata, r = −0.93). High COD removal throughout the study was strongly associated with high SO₄ concentrations at low temperatures, suggesting that plant performance is related to rootzone oxidation and species’ abilities to promote aerobic over anaerobic microbial processes, particularly in winter. Results indicate that improved year-round and cold-season COD removal is common across diverse wetland plant species and novel species can be as good or better than those typically used. Better performing species were largely in the sedge and rush families (Cyperaceae and Juncaceae), while poorer performing species were largely in the grass family (Poaceae).     

Methane oxidation in sediments of a floodplain wetland in south-eastern Australia

Potential rates of in vitro methane oxidation in sediments from a floodplain wetland in south-eastern Australia ranged between 0·05 and 0·45 μmol cm⁻³ h⁻¹. These rates were at least an order of magnitude greater than were potential rates of in vitro methanogenesis, indicating that methanotrophic bacteria could intercept most of the methane produced in the sediments before it was lost to the atmosphere. This finding has implications for environmental management strategies designed to limit methane emissions from natural wetlands, and for fundamental studies of carbon cycling in natural freshwater environments, where methane emissions have been used as an indicator of rates of anaerobic decay of plant detritus. Methane oxidation was an obligately aerobic process, and added sulphate or nitrate could not replace oxygen as a suitable oxidant. Ammonium had little effect on methane oxidation, but allythiourea was strongly inhibitory.     

Conversion from natural wetlands to paddy field alters the composition of soil bacterial communities in Sanjiang Plain,Northeast China

The Sanjiang Plain is the largest freshwater wetlands in Northeast China. In order to feed the growing population, about 84 % of the wetlands in this area have been converted to farmland, especially to paddy fields, since the 1950s. However, little is known about the influence of this conversion on soil microbial community composition. In this study, soil samples were collected from two natural wetlands dominated by plant species Carex lasiocarpa and Deyeuxia angustifolia and from a neighboring paddy field that was changed from wetland more than 10 years ago. The composition and diversity of bacterial communities in the soils were estimated by clone library analysis of nearly full length of 16S rDNA sequences. The results revealed that bacterial diversity was higher in paddy fields, and that the composition of bacterial communities differed among the three samples; the difference was more notable between the paddy field and two natural wetlands than between two natural wetlands. The distribution of clones into different bacterial phyla differed among soil samples, and the conversion from natural wetlands to paddy field increased the abundance of Proteobacteria and Firmicutes but decreased the abundance of Chloroflexi. About 63 % and 71 % of clones from two natural wetlands and 49 % of clones from the paddy field had <93 % similarity with known bacteria, suggesting that the majority of bacteria in natural wetland soils in the Sanjiang Plain are phylogenetically novel. In general, this study demonstrated that long-term conversion from natural wetlands to paddy field changes soil bacterial communities in the Sanjiang Plain.     

Comparative Genomic Analysis Reveals 2-Oxoacid Dehydrogenase Complex Lipoylation Correlation with Aerobiosis in Archaea

Metagenomic analyses have advanced our understanding of ecological microbial diversity, but to what extent can metagenomic data be used to predict the metabolic capacity of difficult-to-study organisms and their abiotic environmental interactions? We tackle this question, using a comparative genomic approach, by considering the molecular basis of aerobiosis within archaea. Lipoylation, the covalent attachment of lipoic acid to 2-oxoacid dehydrogenase multienzyme complexes (OADHCs), is essential for metabolism in aerobic bacteria and eukarya. Lipoylation is catalysed either by lipoate protein ligase (LplA), which in archaea is typically encoded by two genes (LplA-N and LplA-C), or by a lipoyl(octanoyl) transferase (LipB or LipM) plus a lipoic acid synthetase (LipA). Does the genomic presence of lipoylation and OADHC genes across archaea from diverse habitats correlate with aerobiosis? First, analyses of 11,826 biotin protein ligase (BPL)-LplA-LipB transferase family members and 147 archaeal genomes identified 85 species with lipoylation capabilities and provided support for multiple ancestral acquisitions of lipoylation pathways during archaeal evolution. Second, with the exception of the Sulfolobales order, the majority of species possessing lipoylation systems exclusively retain LplA, or either LipB or LipM, consistent with archaeal genome streamlining. Third, obligate anaerobic archaea display widespread loss of lipoylation and OADHC genes. Conversely, a high level of correspondence is observed between aerobiosis and the presence of LplA/LipB/LipM, LipA and OADHC E2, consistent with the role of lipoylation in aerobic metabolism. This correspondence between OADHC lipoylation capacity and aerobiosis indicates that genomic pathway profiling in archaea is informative and that well characterized pathways may be predictive in relation to abiotic conditions in difficult-to-study extremophiles. Given the highly variable retention of gene repertoires across the archaea, the extension of comparative genomic pathway profiling to broader metabolic and homeostasis networks should be useful in revealing characteristics from metagenomic datasets related to adaptations to diverse environments.     

Incomplete recovery of plant diversity in restored prairie wetlands on agricultural landscapes

Restoration efforts are being implemented globally to mitigate the degradation and loss of wetland habitat; however, the rate and success of wetland vegetation recovery post‐restoration is highly variable across wetland classes and geographies. Here, we measured the recovery of plant diversity along a chronosequence of restored temporary and seasonal prairie wetlands ranging from 0 to 23 years since restoration, including drained and natural wetlands embedded in agricultural and natural reserve landscapes in central Alberta, Canada. We assessed plant diversity using the following structural indicators: percent cover of hydrophytes, native and non‐native species, species richness, and community composition. Our findings indicate that plant diversity recovered to resemble reference wetlands in agricultural landscapes within 3–5 years of restoration; however, restored wetlands maintained significantly lower species richness and a distinct community composition compared to reference wetlands located within natural reserves. Early establishment of non‐native species during recovery, dispersal limitation, and depauperated native seed bank were probable barriers to complete recovery. Determining the success of vegetation recovery provides important knowledge that can be used to improve restoration strategies, especially considering projected future changes in land use and climate.