Contrasting diversity patterns of soil mites and nematodes in secondary succession

Soil biodiversity has been recognized as a key feature of ecosystem functioning and stability. However, soil biodiversity is strongly impaired by agriculture and relatively little is known on how and at what spatial and temporal scales soil biodiversity is restored after the human disturbances have come to an end. Here, a multi-scale approach was used to compare diversity patterns of soil mites and nematodes at four stages (early, mid, late, reference site) along a secondary succession chronosequence from abandoned arable land to heath land. In each field four soil samples were taken during four successive seasons. We determined soil diversity within samples (α-diversity), between samples (β-diversity) and within field sites (γ-diversity). The patterns of α- and γ-diversity developed similarly along the chronosequence for oribatid mites, but not for nematodes. Nematode α-diversity was highest in mid- and late-successional sites, while γ-diversity was constant along the chronosequence. Oribatid mite β-diversity was initially high, but decreased thereafter, whereas nematode β-diversity increased when succession proceeded; indicating that patterns of within-site heterogeneity diverged for oribatid mites and nematodes. The spatio-temporal diversity patterns after land abandonment suggest that oribatid mite community development depends predominantly on colonization of new taxa, whereas nematode community development depends on shifts in dominance patterns. This would imply that at old fields diversity patterns of oribatid mites are mainly controlled by dispersal, whereas diversity patterns of nematodes are mainly controlled by changing abiotic or biotic soil conditions. Our study shows that the restoration of soil biodiversity along secondary successional gradients can be both scale- and phylum-dependent.     

Headwater biodiversity among different levels of stream habitat hierarchy

With the current loss of biodiversity and threats to freshwater ecosystems, it is crucial to identify hot-spots of biodiversity and on which spatial scale they can be resolved. Conservation and management of these important ecosystems needs insight into whether most of the regional biodiversity (i.e. γ-diversity) can be found locally (i.e. high α-diversity) or whether it is distributed across the region (i.e. high β-diversity). Biodiversity patterns of benthic macroinvertebrates and diatoms were studied in 30 headwater streams in five Swedish catchments by comparing the relative contribution of α- and β-diversity to γ-diversity between two levels of stream habitat hierarchy (catchment and region level). The relationship between species community structure and local environmental factors was also assessed. Our results show that both α- and β-diversity made a significant contribution to γ-diversity. β-diversity remained relatively constant between the two levels of habitat hierarchy even though local environmental control of the biota decreased from the catchment to the region level. To capture most of headwater γ-diversity, management should therefore target sites that are locally diverse, but at the same time select sites so that β-diversity is maximized. As environmental control of the biota peaked at the catchment level, the conservation of headwater stream diversity is likely to be most effective when management targets environmental conditions across multiple local sites within relatively small catchments.     

试论土壤线虫多样性在生态系统中的作用

土壤线虫的物种多样性和功能群丰富, 不同功能群的土壤线虫取食习惯也不一样, 而土壤线虫取食习惯的多样性以及它们自身的一些属性决定了它们在土壤中与其他生物之间关系的复杂性。土壤中不同生物之间的相互作用决定了土壤食物网的复杂性, 进而影响着土壤生态系统功能。然而, 有关土壤线虫的多样性与土壤生态系统功能之间的关系的研究还很不足。要全面了解土壤线虫在生态系统中的作用, 研究工作必须: (1) 结合室内模拟和野外控制实验; (2) 结合物种多样性调查和不同功能群的功能分析。     

退化高寒草甸狼毒发生区土壤真菌多样性的空间变异

狼毒是青藏高原危害最严重的毒草种类之一,其快速蔓延对高寒草甸生态系统的影响日益严重。选取祁连山中段退化高寒草甸为研究区,综合采用高通量测序技术、地统计学和GIS空间分析方法,分析狼毒发生区土壤真菌多样性的空间变异特征,研究狼毒群落与土壤真菌多样性的空间相关性。结果表明: 与非发生区相比,狼毒发生区土壤真菌群落物种丰富度下降而优势度显著增加,α多样性降低;土壤真菌群落物种构成差异增强,β多样性明显升高。狼毒入侵对土壤真菌多样性的空间格局有一定扰动,发生区各多样性指数的斑块破碎化程度增加,土壤真菌群落物种构成的空间异质性明显增强,α和β多样性的空间稳定性降低。狼毒盖度与土壤真菌α和β多样性指数呈现显著正相关及显著负相关的区域交错镶嵌分布,空间相关性规律不明显,表明狼毒入侵草甸土壤真菌多样性的空间变异可能受地上植被和土壤环境的共同作用。     

Patterns of diversity in the strata of boreal montane forest in British Columbia

Abstract. Patterns of diversity were analyzed in a boreal coniferous forest and its strata (tree, shrub, herb and bryophyte layers): number of species per community — α-diversity, total species richness — γ-diversity, mean similarity — β-diversity, and mosaic diversity, a measure of complexity. These four measures of diversity consistently decreased from lower to upper vegetation layers. To study the effect of juveniles of larger life forms on diversity of lower layers, they were removed from the data and the measures of diversity reanalyzed. Number of species per community and mosaic diversity decreased substantially, but β-diversity did not change. So, the effect of juveniles on γ-diversity is due to the greater number of species per community. Multiple regression models revealed that the relationships between α-diversity and the environmental variables were the same for the whole forest and for the herb layer. Elevation and soil pH were the major variables explaining α-diversity in the whole community. Climate was the only environmental gradient related to species richness in all individual strata. Tree and herb richness values were negatively related to soil drainage and acidity, respectively. Species richness of the plant community was affected by environmental variability mostly through the herb layer. Various explanations of the observed diversity patterns included: environmental constraints, resource competition, generation time, and colonization processes.     

Mutualistic rhizobia reduce plant diversity and alter community composition

Mutualistic interactions can be just as important to community dynamics as antagonistic species interactions like competition and predation. Because of their large effects on both abiotic and biotic environmental variables, resource mutualisms, in particular, have the potential to influence plant communities. Moreover, the effects of resource mutualists such as nitrogen-fixing rhizobia on diversity and community composition may be more pronounced in nutrient-limited environments. I experimentally manipulated the presence of rhizobia across a nitrogen gradient in early assembling mesocosm communities with identical starting species composition to test how the classic mutualism between nitrogen-fixing rhizobia and their legume host influence diversity and community composition. After harvest, I assessed changes in α-diversity, community composition, β-diversity, and ecosystem properties such as inorganic nitrogen availability and productivity as a result of rhizobia and nitrogen availability. The presence of rhizobia decreased plant community diversity, increased community convergence (reduced β-diversity), altered plant community composition, and increased total community productivity. These community-level effects resulted from rhizobia increasing the competitive dominance of their legume host Chamaecrista fasciculata. Moreover, different non-leguminous species responded both negatively and positively to the presence of rhizobia, indicating that rhizobia are driving both inhibitory and potentially facilitative effects in communities. These findings expand our understanding of plant communities by incorporating the effects of positive symbiotic interactions on plant diversity and composition. In particular, rhizobia that specialize on dominant plants may serve as keystone mutualists in terrestrial plant communities, reducing diversity by more than 40 %.     

Elevated temperature may reduce functional but not taxonomic diversity of fungal assemblages on decomposing leaf litter in streams

Mounting evidence points to a linkage between biodiversity and ecosystem functioning (B-EF). Global drivers, such as warming and nutrient enrichment, can alter species richness and composition of aquatic fungal assemblages associated with leaf-litter decomposition, a key ecosystem process in headwater streams. However, effects of biodiversity changes on ecosystem functions might be countered by the presumed high functional redundancy of fungal species. Here, we examined how environmental variables and leaf-litter traits (based on leaf chemistry) affect taxonomic and functional α- and β-diversity of fungal decomposers. We analysed taxonomic diversity (DNA-fingerprinting profiles) and functional diversity (community-level physiological profiles) of fungal communities in four leaf-litter species from four subregions differing in stream-water characteristics and riparian vegetation. We hypothesized that increasing stream-water temperature and nutrients would alter taxonomic diversity more than functional diversity due to the functional redundancy among aquatic fungi. Contrary to our expectations, fungal taxonomic diversity varied little with stream-water characteristics across subregions, and instead taxon replacement occurred. Overall taxonomic β-diversity was fourfold higher than functional diversity, suggesting a high degree of functional redundancy among aquatic fungi. Elevated temperature appeared to boost assemblage uniqueness by increasing β-diversity while the increase in nutrient concentrations appeared to homogenize fungal assemblages. Functional richness showed a negative relationship with temperature. Nonetheless, a positive relationship between leaf-litter decomposition and functional richness suggests higher carbon use efficiency of fungal communities in cold waters.     

Impacts of oil palm plantations on changes in environmental heterogeneity and Heteroptera (Gerromorpha and Nepomorpha) diversity

This study evaluates the effects of oil palm plantations on environmental heterogeneity and diversity (α and β) of aquatic Heteroptera (semi-aquatic and aquatic species) in Amazon streams. We assessed eight streams located in forested areas and 12 in oil palm plantations. As expected, oil palm areas had lower environmental heterogeneity, despite the presence of riparian vegetation. Heteropteran communities differed in forest and oil palm areas, however, only semi-aquatic bugs were affected by environmental variables. Streams in oil palm plantations had lower α-diversity and distinct community structures when compared to forest sites. Oil palm plantation did not affect the β-diversity of semi-aquatic bugs, however, there was increased β-diversity of aquatic bugs in these areas. These results reflect the impacts of environmental heterogeneity generated by plantations next to riparian vegetation, inducing local diversity loss. Effects on β-diversity differed among groups of Heteroptera, mainly due to the differences in the life histories of each group. Semi-aquatic bugs seem to undergo environmental filtering, while aquatic bugs can be structured by limiting similarity. Thus, the management and land conservation strategies adopted to preserve ecosystems within oil palm plantations were insufficient for the protection of aquatic heteropteran communities. In summary, such conservation policies should account for the particularities of different groups of the aquatic ecosystem; especially for aquatic fauna, which are usually overlooked in conservation policies for the Brazilian Amazon.     

贡嘎山海拔梯度上不同植被类型土壤甲烷氧化菌群落结构及多样性

甲烷是仅次于CO₂的第二大温室气体.森林表层土壤中甲烷好氧氧化作用是大气甲烷重要的汇,在碳循环和减缓全球变暖方面起着重要作用.研究不同植被类型土壤中甲烷氧化菌的群落结构及多样性,有助于更好地理解植被演替、人为干扰和不同土地利用背景下甲烷氧化菌群落组成和多样性变化与地上植被之间的相互关系.本研究在贡嘎山东坡海拔梯度上的4种不同植被类型中采集了92个土壤样品,利用Miseq测序技术和生物信息学方法评估了甲烷氧化菌群落组成及多样性在4种不同植被类型间的变化,并探讨了其变异的潜在原因.结果表明: 常绿阔叶林和针阔叶混交林土壤中甲烷氧化菌的群落结构较为相似,暗针叶林和灌丛草甸土壤甲烷氧化菌的群落结构较为相似.4种不同植被生态系统中,针阔叶混交林土壤中的甲烷氧化菌α多样性显著高于其他3种植被生态系统(P＜0.001),且暗针叶林和灌丛草甸土壤中甲烷氧化菌β多样性显著高于常绿阔叶林和针阔叶混交林(P＜0.001).Spearman相关分析表明,不同类型甲烷氧化菌的相对丰度对环境变化的响应模式不同.造成α多样性差异的主要因子可能是土壤总氮、电导率和土壤温度.偏Mantel检验分析和冗余分析(RDA)表明,常绿阔叶林和针阔叶混交林土壤甲烷氧化菌多样性受环境因子的影响较大,而暗针叶林和灌丛草甸土壤中甲烷氧化细菌多样性变化可能存在其他潜在的影响因素或者机制.降水可能是造成低海拔常绿阔叶林和针阔叶混交林与高海拔暗针叶林和灌丛草甸土壤甲烷氧化细菌群落结构差异的主要原因.贡嘎山海拔梯度上不同植被类型土壤中甲烷氧化菌的群落结构和多样性变化可能主要是由于土壤理化性质和气候变化综合作用的结果.     

Contrasting levels of β-diversity and underlying phylogenetic trends indicate different paths to chemical diversity in highland and lowland willow species

Diverse specialised metabolites contributed to the success of vascular plants in colonising most terrestrial habitats. Understanding how distinct aspects of chemical diversity arise through heterogeneous environmental pressures can help us understand the effects of abiotic and biotic stress on plant evolution and community assembly. We examined highland and lowland willow species within a phylogenetic framework to test for trends in their chemical α-diversity (richness) and β-diversity (variation among species sympatric in elevation). We show that differences in chemistry among willows growing at different elevations occur mainly through shifts in chemical β-diversity and due to convergence or divergence among species sharing their elevation level. We also detect contrasting phylogenetic trends in concentration and α-diversity of metabolites in highland and lowland willow species. The resulting elevational patterns contribute to the chemical diversity of willows and suggest that variable selective pressure across ecological gradients may, more generally, underpin complex changes in plant chemistry.     

Patterns of phylogenetic beta diversity in China's grasslands in relation to geographical and environmental distance

Patterns and determinants of beta (β-) diversity can be used to explore the underlying mechanisms regulating community assembly. Despite being the most commonly used measure of β-diversity, species turnover does not consider the evolutionary differences among species, treating all species equally. Incorporating information on phylogenetic non-independence or relatedness among species in the calculation of β-diversity may substantially advance our understanding of the ecological and evolutionary mechanisms structuring communities. Here, we investigate the relative influence of geographical distance and differences in environmental conditions (environmental distance) on the phylogenetic β-diversity between grassland communities expanding 4000 km across the Tibetan Plateau, the Inner Mongolia Plateau and the Xinjiang Autonomous Region in China. Both observed and standardized effect size of phylogenetic β-diversity were significantly correlated with geographical and environmental distance across all regions. However, the effect of geographical distance on the standardized effect size of phylogenetic β-diversity disappeared when environmental distance was controlled. We also found that within different regions, the effect of environmental distance on both observed and standardized effect size of phylogenetic β-diversity was more significant than geographical distance. Among environmental variables, climate played a more important role in shaping observed phylogenetic β-diversity across and within regions, and standardized effect size of phylogenetic β-diversity across regions. Soil properties played a more important role in shaping standardized effect size of phylogenetic β-diversity within regions. The phylogenetic β-diversity of species from dicot and monocot clades exhibited similar patterns along environmental and geographical distance. The results suggest that at the study scale, phylogeny of grassland communities in China is predominantly structured by environmental filtering, and the dominant environmental factors may be scale-dependent.     

Enhancing the structural diversity between forest patches—A concept and real-world experiment to study biodiversity,multifunctionality and forest resilience across spatial scales

Intensification of land use by humans has led to a homogenization of landscapes and decreasing resilience of ecosystems globally due to a loss of biodiversity, including the majority of forests. Biodiversity–ecosystem functioning (BEF) research has provided compelling evidence for a positive effect of biodiversity on ecosystem functions and services at the local (α-diversity) scale, but we largely lack empirical evidence on how the loss of between-patch β-diversity affects biodiversity and multifunctionality at the landscape scale (γ-diversity). Here, we present a novel concept and experimental framework for elucidating BEF patterns at α-, β-, and γ-scales in real landscapes at a forest management-relevant scale. We examine this framework using 22 temperate broadleaf production forests, dominated by Fagus sylvatica. In 11 of these forests, we manipulated the structure between forest patches by increasing variation in canopy cover and deadwood. We hypothesized that an increase in landscape heterogeneity would enhance the β-diversity of different trophic levels, as well as the β-functionality of various ecosystem functions. We will develop a new statistical framework for BEF studies extending across scales and incorporating biodiversity measures from taxonomic to functional to phylogenetic diversity using Hill numbers. We will further expand the Hill number concept to multifunctionality allowing the decomposition of γ-multifunctionality into α- and β-components. Combining this analytic framework with our experimental data will allow us to test how an increase in between patch heterogeneity affects biodiversity and multifunctionality across spatial scales and trophic levels to help inform and improve forest resilience under climate change. Such an integrative concept for biodiversity and functionality, including spatial scales and multiple aspects of diversity and multifunctionality as well as physical and environmental structure in forests, will go far beyond the current widely applied approach in forestry to increase resilience of future forests through the manipulation of tree species composition.     

The response of a three trophic level soil food web to the identity and diversity of plant species and functional groups

Despite considerable recent interest in how biodiversity may influence ecosystem properties, the issue of how plant diversity and composition may affect multiple trophic levels in soil food webs remains essentially unexplored. We conducted a glasshouse experiment in which three plant species of each of three functional groups (grasses, N‐fixing legumes and forbs) were grown in monoculture and in mixtures of three species (with the three species being in the same or different functional groups) and all nine species. Plant species identity had important effects on the biomasses or population densities of belowground primary consumers (microbial biomass, herbivorous nematodes) and two groups of secondary consumers (microbe‐feeding nematodes and enchytraeids); the third consumer trophic level (predatory nematodes) was marginally not significantly affected at P=0.05. Plant species also influenced the relative importance of the bacterial‐based and fungal‐based energy channels for both the primary and secondary consumer trophic levels. Within‐group diversity of only the soil microflora and herbivorous nematodes (both representing the basal consumer trophic level) were affected by plant species identity. However, community composition within all trophic groupings considered (herbivorous nematodes, microbes, microbe‐feeding nematodes, predatory nematodes) was strongly influenced by what plant species were present. Despite the strong responses of the soil biota to plant species identity, there were few effects of plant species or functional group richness on any of the belowground response variables measured. Further, net primary productivity (NPP) was unaffected by plant diversity. Since some belowground response variables were correlated with NPP across treatments, it is suggested that belowground responses to plant diversity might become more apparent in situations when NPP itself responds to plant diversity. Our results point to plant species identity as having important multitrophic effects on soil food webs, both at the whole trophic group and within‐group levels of resolution, and suggest that differences in plant traits across species may be important in driving the decomposer subsystem.     

Plant communities and landscape diversity along a Canadian Arctic river

Abstract. We analysed the structure and diversity of the vegetation along an Arctic river to determine the relationship between species richness and plant community structure. We examined whether variation in species richness along the corridor is structured as (1) an increase in the number of communities due to increasing landscape heterogeneity, (2) an increase in the floristic distinctiveness (β-diversity) of communities, or (3) an increase in within-community richness (α-diversity) as species-poor communities are replaced by species-rich communities. We described 24 community types and analysed the relationship between site vascular species richness (γ-diversity) and β-diversity, α-diversity, site environmental heterogeneity, and the number of distinct plant communities. We also measured diversity patterns of vascular, bryophyte, and lichen species within communities and examined their relationship to community-level estimates of environmental factors. We found that an increase in site species richness correlated with an increase in the number of communities (r²= 0.323, P= 0.0173) and β-diversity (r²= 0.388, P= 0.0075), rather than an increase in the α-diversity of individual communities. Moisture and pH controlled most of the differences in composition between communities. Measures of species richness and correlations with moisture and pH within communities differed among vascular, bryophyte, and lichen species. Bryophyte richness was positively correlated with moisture (r²= 0.862, P= 0.0010) and lichen richness was negatively correlated with moisture (r²= 0.809, P= 0.0031). Vascular plants had a peak in richness at pH 6.5 (r²= 0.214, P < 0.0001). We conclude that site variation in vascular richness in this region is controlled by landscape heterogeneity, and structured as variation in the number and distinctiveness of recognizable plant communities.     

Mapping biodiversity in three-dimensions challenges marine conservation strategies: The example of coralligenous assemblages in North-Western Mediterranean Sea

Multi-facet diversity indices have been increasingly widely used in conservation ecology but congruence analyses both on horizontal and vertical axes have not yet been explored. We investigated the vertical and horizontal distributions of α and β taxonomic (TD), functional (FD) and phylogenetic diversity (PD) in a three-dimensional structured ecosystem. We focused on the Mediterranean coralligenous assemblages which form complex structures both vertically and horizontally, and are considered as the most diverse and threatened communities of the Mediterranean Sea. Although comparable to tropical reef assemblages in terms of richness, biomass and production, coralligenous assemblages are less known and more rarely studied, in particular because of their location in deep waters. Our study covers the entire range of distribution of coralligenous habitats along the French Mediterranean coasts, representing the most complete database so far developed for this important ecosystem. To our knowledge, this is the first analysis of spatial diversity patterns of marine biodiversity on both horizontal and vertical scales.Our study revealed that taxonomic diversity differed from functional and phylogenetic diversity patterns at the station level, the latter two being strongly structured by depth, with shallower stations generally richer than deeper ones. Considering all stations, phylogenetic diversity was less congruent to taxonomic diversity (Pearson's correlation of r = 0.48) but more congruent to functional diversity (r = 0.69) than randomly expected. Similar congruence patterns were revealed for stations deeper than 50 m (r = 0.44 and r = 0.84, respectively) but no significantly different congruence level than randomly expected was revealed among diversity facets for more shallow stations. Mean functional α- and β-diversity were lower than phylogenetic diversity and even lower than taxonomic α- and β-diversity for both vertical and horizontal scales. Low FD and PD values at both α- and β-diversity indicated functional and phylogenetic clustering. Community dissimilarities (β-diversity) increased over depth especially in central and eastern part of the French Mediterranean littoral and in northern Corsica, indicating coralligenous vertical structure within these regions. Overall horizontal β-diversity was higher within the 50–70 m depth belts.We conclude that taxonomic diversity alone is inadequate as a basis for setting conservation goals for this ecosystem and additional information, at least on phylogenetic diversity, is needed to preserve the ecosystem functioning and coralligenous evolutionary history. Our results highlight the necessity of considering different depth belts as a basis for regional scale conservation efforts. Current conservation approaches, such as the existing marine protected areas, are insufficient in preserving coralligenous habitats. The use of multi-facet indices should be considered, focusing on preserving local diversity patterns and compositional dissimilarities, both vertically and horizontally.     

Resistance of soil biota and plant growth to disturbance increases with plant diversity

Plant diversity is critical to the functioning of ecosystems, potentially mediated in part by interactions with soil biota. Here, we characterised multiple groups of soil biota across a plant diversity gradient in a long‐term experiment. We then subjected soil samples taken along this gradient to drought, freezing and a mechanical disturbance to test how plant diversity affects the responses of soil biota and growth of a focal plant to these disturbances. High plant diversity resulted in soils that were dominated by fungi and associated soil biota, including increased arbuscular mycorrhizal fungi and reduced plant‐feeding nematodes. Disturbance effects on the soil biota were reduced when plant diversity was high, resulting in higher growth of the focal plant in all but the frozen soils. These results highlight the importance of plant diversity for soil communities and their resistance to disturbance, with potential feedback effects on plant productivity.     

Recurrent landslides affect the functional beta diversity of a megadiverse tropical forest

Background: Natural disturbance is an important factor that contributes to structuring plant communities. In tropical mountain areas, landslides are frequent and could enhance the diversity in mountain forests. However, the spatial scale in which landslide affect diversity is not known.

Aims: To investigate whether landslides affect taxonomic and functional diversity at different spatial scales. We tested if: (1) taxonomic and functional α-diversity were lower in areas with landslide history; (2) the taxonomic β-diversity was high while the functional β-diversity was low in landslide-affected areas; and (3) plants in areas with landslide history would have, on average, smaller and thicker leaves, with greater pubescence, lower specific leaf area and higher dry matter content.

Methods: At five sites in the Atlantic Forest, we sampled five 5 m × 5 m plots in areas with recent landslide history (from 2 to 39 years) and in adjacent control areas. We identified all juvenile trees (30–100 cm in height) and measured their leaf traits.

Results: Taxonomic α-diversity and functional β-diversity and the occurrence of leaves with trichomes were greater in areas affected by landslide.

Conclusion: The habitat heterogeneity in areas subject to recurrent landslides influenced the functional dispersion and the structuring of plant communities.     

南亚热带森林演替过程中土壤线虫群落结构变化

森林演替会通过改变植物群落组成和土壤环境影响土壤生物群落, 反过来, 土壤生物群落的变化也会对生态系统的演替产生反馈作用, 但迄今南亚热带森林演替过程中土壤生物群落的变化特征尚不清晰。本研究以广东省鼎湖山的南亚热带森林演替序列(马尾松(Pinus massoniana)林-针阔叶混交林-季风常绿阔叶林)为对象, 研究了森林演替过程中土壤线虫多样性和群落结构的动态变化及其影响因素。通过采集不同演替阶段的土壤样品, 分析和比对了不同演替阶段土壤线虫的多度、多样性、群落组成、土壤线虫生态指数以及土壤理化性质的差异。结果表明: (1)在南亚热带森林演替过程中, 针阔叶混交林和季风常绿阔叶林土壤线虫的α多样性显著高于马尾松林, 但土壤线虫总数和各营养类群多度及其相对丰度并无显著变化; (2)针阔叶混交林中土壤线虫富集指数显著高于马尾松林, 表明其土壤养分状况要好于马尾松林, 而季风常绿阔叶林土壤线虫结构指数较高, 表明其受干扰程度较低; (3)针阔叶混交林的土壤含水量和土壤理化性质(除土壤总磷含量)已达到季风常绿阔叶林的水平, 但两者的土壤pH值均显著低于马尾松林, 而土壤pH值和土壤含水量是影响土壤线虫群落动态变化的主要因素。综上所述, 南亚热带森林中土壤线虫多度、多样性和群落结构对森林演替的响应略有不同, 演替过程中土壤环境因素的趋同是导致针阔叶混交林和季风常绿阔叶林中土壤线虫多样性和群落特征相似的主要原因。     

The distribution of coastal fish eDNA sequences in the Anthropocene

Aim

Coastal fishes have a fundamental role in marine ecosystem functioning and contributions to people, but face increasing threats due to climate change, habitat degradation and overexploitation. The extent to which human pressures are impacting coastal fish biodiversity in comparison with geographic and environmental factors at large spatial scale is still under scrutiny. Here, we took advantage of environmental DNA (eDNA) metabarcoding to investigate the relationship between fish biodiversity, including taxonomic and genetic components, and environmental but also socio-economic factors.

Location

Tropical, temperate and polar coastal areas.

Time period

Present day.

Major taxa studied

Marine fishes.

Methods

We analysed fish eDNA in 263 stations (samples) in 68 sites distributed across polar, temperate and tropical regions. We modelled the effect of environmental, geographic and socio-economic factors on α- and β-diversity. We then computed the partial effect of each factor on several fish biodiversity components using taxonomic molecular units (MOTU) and genetic sequences. We also investigated the relationship between fish genetic α- and β-diversity measured from our barcodes, and phylogenetic but also functional diversity.

Results

We show that fish eDNA MOTU and sequence α- and β-diversity have the strongest correlation with environmental factors on coastal ecosystems worldwide. However, our models also reveal a negative correlation between biodiversity and human dependence on marine ecosystems. In areas with high dependence, diversity of all fish, cryptobenthic fish and large fish MOTUs declined steeply. Finally, we show that a sequence diversity index, accounting for genetic distance between pairs of MOTUs, within and between communities, is a reliable proxy of phylogenetic and functional diversity.

Main conclusions

Together, our results demonstrate that short eDNA sequences can be used to assess climate and direct human impacts on marine biodiversity at large scale in the Anthropocene and can further be extended to investigate biodiversity in its phylogenetic and functional dimensions.