Population attenuation in zooplankton communities during transoceanic transfer in ballast water

Successful biological invasion requires introduction of a viable population of a nonindigenous species (NIS). Rarely have ecologists assessed changes in populations while entrained in invasion pathways. Here, we investigate how zooplankton communities resident in ballast water change during transoceanic voyages. We used next‐generation sequencing technology to sequence a nuclear small subunit ribosomal DNA fragment of zooplankton from ballast water during initial, middle, and final segments as a vessel transited between Canada and Brazil. Operational taxonomic unit (OTU) diversity decreased as voyage duration increased, indicating loss of community‐based genetic diversity and development of bottlenecks for zooplankton taxa prior to discharge of ballast water. On average, we observed 47, 26, and 24 OTUs in initial, middle, and final samples, respectively. Moreover, a comparison of genetic diversity within taxa indicated likely attenuation of OTUs in final relative to initial samples. Abundance of the most common taxa (copepods) declined in all final relative to initial samples. Some taxa (e.g., Copepoda) were represented by a high number of OTUs throughout the voyage, and thus had a high level of intraspecific genetic variation. It is not clear whether genotypes that were most successful in surviving transit in ballast water will be the most successful upon introduction to novel environments. This study highlights that population bottlenecks may be common prior to introduction of NIS to new ecosystems.     

Transoceanic ships as vectors for nonindigenous freshwater bryozoans

Aim The transport of organisms in ships’ ballast tanks is a dominant vector for aquatic invasions worldwide. Until recently, efforts to manage this vector have overlooked the potential transport of invertebrate resting stages in the residual waters and sediments within emptied ballast tanks, i.e. NOBOB (‘No Ballast On Board’) tanks. The resting stages (statoblasts) of freshwater bryozoans are often buoyant and locally abundant and thus can be taken up easily during ballasting operations. They are also resistant to extreme environmental conditions and can generate new colonies after being dormant for decades; as such, they would likely remain viable propagules after lengthy transport in ship ballast tanks. This study quantified the occurrence of freshwater bryozoan statoblasts in ballast tank sediments of transoceanic ships. Location North American Great Lakes. Methods We quantified the frequency of occurrence, abundance and diversity of bryozoans (as statoblasts) in residual sediment samples taken from 51 NOBOB tanks of 33 transoceanic ships visiting the Great Lakes from 2000 to 2002. Results Our study identified 11 species, comprising nearly 12% of the total number of freshwater bryozoans known worldwide. These include two exotic species unrecorded in the Great Lakes (Fredericella sultana and Lophopus crystallinus), an exotic species already established in the region (Lophopodella carteri) and three cosmopolitan species (Plumatella casmiana, P. fungosa and P. repens). Our estimates suggest that a ship with NOBOB tanks may carry up to 10⁶ statoblasts. Main conclusions The discovery of species unrecorded in the Great Lakes and the potentially large numbers of statoblasts being transported in ship ballast tanks indicate a significant risk of new species introductions. Furthermore, the presence of cosmopolitan species and an exotic species already established in the Great Lakes suggests the strong possibility of cryptic invasions via the introduction of exotic genotypes.     

Marine biological invasions in waters of the port of Novorossiysk in the Black Sea

The results of the monitoring of ballast waters of commercial vessels and research on the ecosystem biodiversity of the Novorossiysk Port are reported. Data on structure of immigrant fauna, its abundance, survival and origin of species were obtained. It has been established that the risk of introduction of Mediterranean species into the Novorossiysk Bay is the most probable. The basic “risk groups” are copepods and polychaetes. It has been hypothesized, that ship ballast water can become a primary factor of the “mediterranization” of the copepod fauna (Copepoda) in the northeast of the Black Sea. During the period of research in the Novorossiysk Bay, 36 species of Mediterranean copepods were recorded. A massive number of the cyclopoid copepod Oithona brevicornis Giesbr., 1891, a new species for the Black Sea, was recorded in samples collected in the autumn of 2005 and 2006. The status of the invader was attributed to the polychaete of the Streblospio genus. The necessity of ship ballast water control in Russia and the development of methodology, methods, and regulations for the prevention of the intrusion of pathogenic and potentially dangerous organisms by marine traffic were corroborated.     

In situ hatching of invertebrate diapausing eggs from ships' ballast sediment

Ships that enter the Great Lakes laden with cargo carry only residual ballast water and sediment in ballast tanks. These ships are designated ‘no ballast on board’ (NOBOB) and constitute > 90% of inbound traffic. We conducted in situ experiments using emergence traps to assess the viability and the introduction potential of invertebrate diapausing stages present in ships’ ballast sediment. All trials commenced while vessels operated on the lower lakes (Erie, Ontario) and were completed 6–11 days later at ports on the upper lakes (Michigan, Lake Superior). Eight trials were conducted on four ships using five different ballast sediments. Hatching was observed on every ship, although not from all sediments on all ships. Overall hatch rates were very low (0.5 individuals per 500 g sediment), typically involving activation of < 0.05% of total eggs present. Five species of rotifers and copepod nauplii were hatched from ballast sediments, although only one or two species typically hatched from any one sediment. Results of this study indicate that hatching of diapausing eggs contained in ballast sediment of NOBOB ships poses a relatively low risk of invasion to the Great Lakes. However, as reproduction may occur in tanks, and non‐indigenous species may be involved in numerous introduction events, the risk posed by this vector is small but potentially important. While dormancy is a characteristic enabling enhanced survival during transportation in ballast tanks, it becomes a hindrance for introduction.     

Exotic plant invasion in the highly degraded upland landscape of Hong Kong, China

Plant communities in the continental tropics have suffered less from exotic plant invasions than their oceanic island counterparts. Most studies have focused on near-pristine communities. By contrast, we examine the resistance of semi-natural continental plant communities in Hong Kong, which have been suffering from chronic and massive human impacts. We compiled a list of all naturalized non-native species recorded in Hong Kong and then sampled the plant communities for exotic species along roadsides, a stream through semi-natural vegetation, and in semi-natural vegetation away from both roads and streams on Tai Mo Shan, Hong Kong’s highest peak (957 m). Similar surveys were repeated in other areas of Hong Kong. More than 162 naturalized exotic plant species have been recorded in Hong Kong. On Tai Mo Shan, 29 exotic species were recorded in roadside vegetation, with the diversity but not percentage cover declining significantly with altitude. Fifteen exotic species were found along the stream, including two not found along the roadside. Only six exotic species were found away from roads and streams, all in unshaded areas disturbed by feral cattle. In all surveys, no exotics were found in closed woody vegetation or in open areas without feral cattle, except for one species. The shade-tolerant tropical Asian tree Syzygium jambos was found invading along some streamsides without anthropogenic disturbance. Despite centuries of massive human impacts, exotic plant invasions in Hong Kong are still largely confined to habitats that suffer from chronic human disturbance. Feral cattle promote invasion where people are absent, but this problem still seems potentially reversible. Only Syzygium jambos is of possible current conservation concern.     

Acclimation and introduction of hydrobionts ships’ ballast water organisms in the Port of Vladivostok

Work on the investigation of organisms of ballast water and sediments of ships sailing on Russia-Japan and Russia-China lines was started in the Port of Vladivostok for the first time for the Far East seas of Russia. In total, 145 taxa, 37 microalgal species, 24 holoplankton species, 22 meroplankton taxa, and 10 meiofauna groups were revealed, 24 species of microscopic mycelia fungi were attributed, and 28 morphologically distinct bacterial stains were isolated. Potentially toxic microalgal species were found: the dinoflagellates Dinophysis acuminate and Prorocentrum cordatum and the diatom Pseudo-nitzschia pungens. The tropical-subtropical copepod Pseudocalanus inopinus was recorded in ballast water. Polychaete larvae of the Polydora genus with an unusual morphology, which were not occurring in the Peter the Great Bay previously, were recorded as probable southern migrants from the coastal waters of the southwest coast of Honshu Island. Live larvae of the hermit crab Diogenes nitidimanus were revealed in ballast water, supporting the possibility of introduction of this species in the Peter the Great Bay. Based on an analysis of the total number of colony-forming units of heterotroph microorganisms (within the order of 10³–10⁴ cells/ml), the ballast water of ships sailing on the Russia-Japan line was characterized as moderately polluted. The detection of Escherichia coli strains, exceeding the standards quoted in the International Convention by three times or more, showed the potential danger of a mass bioinvasion. Conditionally pathogenic and toxinogenic mycelial fungi, which are able to induce mycoses and mycotoxicoses in invertebrates and fishes, were isolated from ballast water. It was determined that ballast water of the “rusty” type was poorly suited for the existence of zoo- and phytoplankton forms. In the case of the construction of an oil terminal in the Peter the Great Bay, a sharp increase of the introduction of exotic species via the ballast water and foulings of tankers is inevitable     

Holoplankton of ship ballast water in the Port of Vladivostok

Ballast water samples were taken from three ships that arrived at the Port of Vladivostok (Peter the Great Bay, Sea of Japan) from ports of Japan (Sea of Japan and Pacific Ocean) and China (Yellow Sea and Yangtze River). The holoplankton in samples was presented by seven taxonomic groups, among which copepods (subclass Copepoda, 33 species) and cladocerans (subclass Cladocera, 5 species) dominated. In the samples, eight nonindigenous copepod species were revealed. The information contained in this paper may be of importance for the assessment of the risk of subsequent invasion of new species and the development of techniques for monitoring the qualitative and quantitative structures of ballast water.     

Phytoplankton and bacterial assemblages in ballast water of U.S. military ships as a function of port of origin, voyage time, and ocean exchange practices

We characterized the physical/chemical conditions and the algal and bacterial assemblages in ballast water from 62 ballast tanks aboard 28 ships operated by the U.S. Military Sealift Command and the Maritime Administration, sampled at 9 ports on the U.S. West Coast and 4 ports on the U.S. East Coast. The ballast tank waters had been held for 2–176 days, and 90% of the tanks had undergone ballast exchange with open ocean waters. Phytoplankton abundance was highly variable (grand mean for all tanks, 3.21 × 10⁴ viable cells m⁻³; median, 7.9 × 10³ cells m⁻³) and was unrelated to physical/chemical parameters, except for a positive relationship between centric diatom abundance and nitrate concentration. A total of 100 phytoplankton species were identified from the ballast tanks, including 23 potentially harmful taxa (e.g. Chaetoceros concavicornis, Dinophysis acuminata, Gambierdiscus toxicus, Heterosigma akashiwo, Karlodinium veneficum, Prorocentrum minimum, Pseudo-nitzschia multiseries). Assemblages were dominated by chain-forming diatoms and dinoflagellates, and viable organisms comprised about half of the total cells. Species richness was higher in ballast tanks with coastal water, and in tanks containing Atlantic or Pacific Ocean source waters rather than Indian Ocean water. Total and viable phytoplankton numbers decreased with age of water in the tanks. Diversity also generally decreased with water age, and tanks with ballast water age >33 days did not produce culturable phytoplankton. Abundance was significantly higher in tanks with recently added coastal water than in tanks without coastal sources, but highly variable in waters held less than 30 days. Bacterial abundance was significantly lower in ballast tanks with Atlantic than Pacific Ocean source water, but otherwise was surprisingly consistent among ballast tanks (overall mean across all tanks, 3.13 ± 1.27 × 10¹¹ cells m⁻³; median, 2.79 × 10¹¹ cells m⁻³) and was unrelated to vessel type, exchange status, age of water, environmental conditions measured, or phytoplankton abundance. At least one of four pathogenic eubacteria (Listeria monocytogenes, Escherichia coli, Mycobacterium spp., Pseudomonas aeruginosa) was detected in 48% of the ballast tanks, but toxigenic strains of Vibrio cholerae were not detected. For ships with tanks of similar ballasting history, the largest source of variation in phytoplankton and bacteria abundance was among ships; for ships with tanks of differing ballasting histories, and for all ships/tanks considered collectively, the largest source of variation was within ships. Significant differences in phytoplankton abundance, but not bacterial abundance, sometimes occurred between paired tanks with similar ballasting history; hence, for regulatory purposes phytoplankton abundance cannot be estimated from single tanks only. Most tanks (94%) had adequate records to determine the source locations and age of the ballast water and, as mentioned, 90% had had ballast exchange with open-ocean waters. Although additional data are needed from sediments that can accumulate at the bottom of ballast tanks, the data from this water-column study indicate that in general, U.S. Department of Defense (DoD) ships are well managed to minimize the risk for introduction of harmful microbiota. Nevertheless, abundances of viable phytoplankton with maximum dimension >50 μm exceeded proposed International Maritime Organization standards in 47% of the ballast tanks sampled. The data suggest that further treatment technologies and/or alternative management strategies will be necessary to enable DoD vessels to comply with proposed standards.     

Diatom survivorship in ballast water during trans-Pacific crossings

Ship ballast water is believed to be responsible for global dispersal of alien biota; mid-ocean ballast water exchange is most commonly used to mitigate this process. Diatoms are among the most abundant biotic-component in ballast water, yet their invasive biology is poorly understood. To test effectiveness of MOE we examined diatom species composition and cell density in two sets of samples. First, we examined samples collected daily during one 24 days long trans-Pacific crossing in tanks with and without ballast exchanged. Second, we used samples from 23 trans oceanic vessels arriving at Vancouver harbour where diatoms were collected on arrival. Up to 86,429 live diatom cells/l were found in the tanks, ~50% of the samples share up to eight species consistently present. Cell densities and species richness declined over time and with replacement of coastal ballast water by mid-oceanic water. In both data sets diatoms survive in the tanks for as long as 33 days despite ballast exchange.     

Overview on introduced aquatic species in European navigational and adjacent waters

More than 1,000 non-indigenous aquatic species have been recorded, in total, from coastal Europe, i.e. navigational inland waterways for ocean-going vessels and adjacent water bodies in close proximity. Regions considered in this overview range from European Arctic waters to the Mediterranean Sea and Irish waters to the Black Sea. The majority of introduced taxa have been first recorded since the 1950s. Approximately 600 taxa (ranging from unicellular algae to vertebrates) are established with self-sustaining populations. The dominating group of exotic species across all seas is zoobenthos organisms. Introduction vectors are predominantly shipping (ballast water and hull fouling) and species movements for aquaculture or stocking purposes.     

船舶压载水携带外来物种及其对水域生态环境的影响

随着世界航运业的不断发展 ,船舶频繁地来往于世界各地 ,船舶压载水作为一种外来物种传播的有效媒介物 ,使得不同水域的物种得以传播到其他水域。这些物种种类繁多 ,普遍具有适应性较强 ,危害性较大等特点。本文就一些世界范围内广泛传播的典型外来物种进行了列举 ,并对它们的分类、发源地、传入媒介、习性、分布以及由于它们的入侵给当地的生态环境、人类健康、经济带来的不利影响以及当地所采取的一些治理措施等进行了较为详细地阐述。提出控制船舶压载水的排放以及研究较为有效的压载水治理方法是解决压载水携带外来物种入侵性传播的有效途径     

Exotic invaders of the meso-oligohaline zone of estuaries in the Netherlands: why are there so many?

The numbers of exotic species introduced into brackish waters (5–20 psu) and high-salinity waters (> 20 psu) in the Netherlands are hypothesized to reflect species richness in such waters elsewhere in the world. Notwithstanding the fact that species numbers in brackish waters all over the world are lower than in high-salinity waters, the numbers of introduced species in these waters in the Netherlands are about equal. Alternative hypotheses to explain this phenomenon are: (1) because most ports are situated in brackish regions, brackish-water species stand a better chance of being transported; (2) because brackish-water species are more tolerant of conditions in ballast water tanks, these species have a better chance of being transported alive than high-salinity species; and (3) because brackish waters have few species, it is easier for an introduced species to establish itself in brackish waters. None of the latter three hypotheses can be rejected and probably they all play a part in explaining the phenomenon. The third hypothesis, however, seems most likely.     

香港大埔滘天然次生林鸟类群落结构变化

观察了香港最大的大埔滘天然次生林内鸟类群落结构在10a间的变化。用t檢验比较了1993~1995年和2003~2005年间的10种数量最高的鸟类的密度变化。所有的泛生境留鸟种类的密度均呈显著减少。两种树林种类的密度有显著増加,其中一种是本土种,另一种是外来种。香港树林鸟类群落的变化趋势主要受到两个因素的影响,包括缺少有树林种类鸟居住的树林,和外来种的入侵。     

Optimizing methods to estimate zooplankton concentration based on generalized patterns of patchiness inside ballast tanks and ballast water discharges

Zooplankton populations are spatially heterogeneous in nature and inside ship ballast tanks. Sampling methods should take heterogeneity into account, particularly when estimating quantitative variables such as abundance or concentration. It is particularly important to generate unbiased estimates of zooplankton concentration in ballast water when assessing compliance with new international ballast water discharge standards. We measured spatial heterogeneity of zooplankton within ballast water using three sampling methodologies. In‐tank pump samples were collected at fixed depths within the vertical part of the ballast tank (side tank). Vertical net‐haul samples were collected from the upper portion of the tank as a depth‐integrated and historically relevant method. In‐line, time‐integrated samples were collected during ballast discharge by an isokinetic sample probe, likely representing the double bottom part of the ballast tank. The bias and precision associated with each sampling method were evaluated in reference to the estimated average abundance of the entire ballast tank, which was modeled from the data collected by all methods. In‐tank pump samples provided robust evidence for vertical stratification of zooplankton concentration in the side tank. A consistent trend was also observed for in‐line discharge samples, with zooplankton concentration decreasing through time as the ballast tank is being discharged. Sample representativeness, as compared to the tank average, varied depending on the depth or tank volume discharged. In‐line discharge samples provided the least biased and most precise estimate of average tank abundance (having lowest mean squared error) when collected during the time frame of 20%–60% of the tank volume being discharged. Results were consistent across five trips despite differences in ballast water source, season, and age.     

Rapid Assessment Survey for Exotic Organisms in Southern California Bays and Harbors, and Abundance in Port and Non-port Areas

In recent decades, the world has witnessed an array of harmful invasions by exotic marine organisms. To provide the public and policymakers with better information on the status of exotic species in southern California waters, and to assess differences between port and non-port areas, a Rapid Assessment Survey of selected habitat types in sheltered waters between San Diego and Oxnard was conducted in the summer of 2000. The objectives included comparing the prevalence of exotic species among habitats and regions and between recent and past surveys; obtaining reference data for future assessments of changes in invasion status and the effectiveness of prevention or control efforts; detecting new invasions; and documenting significant range extensions. Twenty-two sites were sampled to include the three major commercial port areas in southern California, non-port-area marinas and lagoon sites. Sampling included dock fouling and adjacent soft-bottom benthos, nearby intertidal sites, and selected subtidal lagoon habitats. Samples were collected by a variety of manual techniques. Sixty-nine of the species collected are exotic, including representatives from two algal divisions and six invertebrate phyla. Ascidians are especially well-represented (14 exotic species) and widely occurring, and some bivalves and bryozoans also occur very widely. The numbers and proportions of exotic taxa were not significantly greater in port areas than in non-port areas.     

Pandemic Serotypes of Vibrio cholerae Isolated from Ships’ Ballast Tanks and Coastal Waters: Assessment of Antibiotic Resistance and Virulence Genes (tcpA and ctxA)

There is concern that ships’ ballasting operations may disseminate Vibrio cholerae to ports throughout the world. Given evidence that the bacterium is indeed transported by ships, we isolated pandemic serotypes O1 and O139 from ballast tanks and characterized them with respect to antibiotic resistance and virulence genes ctxA and tcpA. We carried out concurrent studies with V. cholerae isolated from coastal waters. Of 284 isolates, 30 were serotype O1 and 59 were serotype O139. These serotypes were overrepresented in ballast tanks relative to the coastal waters sampled. All locations, whether coastal waters or ballast tanks, yielded samples from which serotype O1, O139, or both were isolated. There were three groups among the 62 isolates for which antibiotic characterization was conclusive: those exhibiting β-lactamase activity and resistance to at least one of the 12 antibiotics tested; those negative for β-lactamase but having antibiotic resistance; those negative for β-lactamase and registering no antibiotic resistance. When present, antibiotic resistance in nearly all cases was to ampicillin; resistance to multiple antibiotics was uncommon. PCR assays revealed that none of the isolates contained the ctxA gene and only two isolates, one O139 and one O1, contained the tcpA gene; both isolates originated from ballast water. These results support the bacteriological regulations proposed by the International Maritime Association for discharged ballast water.     

江阴港口外来船舶压载舱沉积物中甲藻包囊种类及组成

为了探究外来船舶压载舱沉积物中甲藻休眠包囊的种类组成及外来甲藻入侵风险, 本文根据包囊及其萌发细胞的形态特征辅以分子生物学信息对江阴港5艘外来船舶压载舱沉积物中的活体甲藻休眠包囊的种类进行鉴定和分析。共鉴定出甲藻休眠包囊29种(不含3种未鉴定种), 包括膝沟藻类、钙甲藻类、裸甲藻类、翼甲藻类以及原多甲藻类, 活体休眠包囊密度介于0.73-44.3 cysts/g DW。其中塔玛亚历山大藻复合种(Alexandrium tamarense species complex)、网状原角藻(Protoceratium reticulatum)、具刺膝沟藻(Gonyaulax spinifera)等有毒有害甲藻的包囊在取样的5艘船舶中均有发现。此外还发现了多种中国近海未报道的甲藻包囊种类, 其中一种经过分子手段确定为异常亚历山大藻(Alexandrium insuetum)包囊, 萌发和培养实验表明该种包囊能够在中国近海萌发并增殖, 有潜在的入侵风险和暴发赤潮的可能性。     

Physico‐chemical variables determining the invasion risk of freshwater habitats by alien mollusks and crustaceans

The aim of this study was to assess the invasion risk of freshwater habitats and determine the environmental variables that are most favorable for the establishment of alien amphipods, isopods, gastropods, and bivalves. A total of 981 sites located in streams and rivers in Germany. Therefore we analyzed presence–absence data of alien and indigenous amphipods, isopods, gastropods, and bivalves from 981 sites located in small to large rivers in Germany with regard to eight environmental variables: chloride, ammonium, nitrate, oxygen, orthophosphate, distance to the next navigable waterway, and maximum and minimum temperature. Degraded sites close to navigable waters were exposed to an increased invasion risk by all major groups of alien species. Moreover, invaded sites by all four groups of alien species were similar, whereas the sites where indigenous members of the four groups occurred were more variable. Increased temperature and chloride concentration as well as decreased oxygen concentration were identified as major factors for the invasibility of a site. Species‐specific analyses showed that chloride was among the three most predictive environmental variables determining species assemblage in all four taxonomic groups. Also distance to the next navigable waterways was similarly important. Additionally, the minimum temperature was among the most important variables for amphipods, isopods, and bivalves. The bias in the occurrence patterns of alien species toward similarly degraded habitats suggests that the members of all four major groups of freshwater alien species are a non‐random, more tolerant set of species. Their common tolerance to salinity, high temperature, and oxygen depletion may reflect that most alien species were spread in ballast water tanks, where strong selective pressures, particularly temperature fluctuations, oxygen depletion, and increased salinity may create a bottleneck for successful invasion. Knowledge on the major factors that influence the invasion risk of a habitat is needed to develop strategies to limit the spread of invasive species.     

M-AMBI derived from taxonomic levels higher than species allows Ecological Status assessments of benthic habitats in new geographical areas

Under the Water Framework Directive (WFD) benthic Ecological Quality Ratios (EQRs) are important tools for assessing Ecological Status (ES) of coastal and transitional waters. Calculation of the Multivariate-AZTI Marine Biotic Index (M-AMBI) EQR is based on the proportions of sensitive and stress tolerant benthic invertebrate species, number of species and Shannon–Wiener diversity. The sensitivity of many tropical/sub-tropical taxa has not yet been determined, presenting a barrier to the direct transfer of WFD EQRs, and the ideas underpinning them, to the management of coastal waters beyond Europe. To overcome this we examine using higher taxonomic level data with M-AMBI.Before applying such approaches to assessing ES in new geographical regions it is essential to determine the effects of using higher taxonomic level data on M-AMBI in areas where the tool was developed. To this end, we use macrofaunal data from three well studied sites in north-western Europe to examine the effects of using taxonomic level data higher than species on M-AMBI. Using the European datasets M-AMBI ES classification was shown to be robust to changes in taxonomic level data. We test the suitability of family-level M-AMBI for assessing ES in subtropical Hong Kong waters. Family level M-AMBI was useful in detecting stress in Hong Kong, where it successfully detected temporal and spatial shifts in ES in response to seasonal hypoxia and salinity variability, and anthropogenic organic enrichment.     

Application of Ion Torrent Sequencing to the Assessment of the Effect of Alkali Ballast Water Treatment on Microbial Community Diversity

The impact of NaOH as a ballast water treatment (BWT) on microbial community diversity was assessed using the 16S rRNA gene based Ion Torrent sequencing with its new 400 base chemistry. Ballast water samples from a Great Lakes ship were collected from the intake and discharge of both control and NaOH (pH 12) treated tanks and were analyzed in duplicates. One set of duplicates was treated with the membrane-impermeable DNA cross-linking reagent propidium mono-azide (PMA) prior to PCR amplification to differentiate between live and dead microorganisms. Ion Torrent sequencing generated nearly 580,000 reads for 31 bar-coded samples and revealed alterations of the microbial community structure in ballast water that had been treated with NaOH. Rarefaction analysis of the Ion Torrent sequencing data showed that BWT using NaOH significantly decreased microbial community diversity relative to control discharge (p<0.001). UniFrac distance based principal coordinate analysis (PCoA) plots and UPGMA tree analysis revealed that NaOH-treated ballast water microbial communities differed from both intake communities and control discharge communities. After NaOH treatment, bacteria from the genus Alishewanella became dominant in the NaOH-treated samples, accounting for <0.5% of the total reads in intake samples but more than 50% of the reads in the treated discharge samples. The only apparent difference in microbial community structure between PMA-processed and non-PMA samples occurred in intake water samples, which exhibited a significantly higher amount of PMA-sensitive cyanobacteria/chloroplast 16S rRNA than their corresponding non-PMA total DNA samples. The community assembly obtained using Ion Torrent sequencing was comparable to that obtained from a subset of samples that were also subjected to 454 pyrosequencing. This study showed the efficacy of alkali ballast water treatment in reducing ballast water microbial diversity and demonstrated the application of new Ion Torrent sequencing techniques to microbial community studies.