Calcium waves

Waves through living systems are best characterized by their speeds at 20 degrees C. These speeds vary from those of calcium action potentials to those of ultraslow ones which move at 1-10 and/or 10-20 nm s(-1). All such waves are known or inferred to be calcium waves. The two classes of calcium waves which include ones with important morphogenetic effects are slow waves that move at 0.2-2 microm s(-1) and ultraslow ones. Both may be propagated by cycles in which the entry of calcium through the plasma membrane induces subsurface contraction. This contraction opens nearby stretch-sensitive calcium channels. Calcium entry through these channels propagates the calcium wave. Many slow waves are seen as waves of indentation. Some are considered to act via cellular peristalsis; for example, those which seem to drive the germ plasm to the vegetal pole of the Xenopus egg. Other good examples of morphogenetic slow waves are ones through fertilizing maize eggs, through developing barnacle eggs and through axolotl embryos during neural induction. Good examples of ultraslow morphogenetic waves are ones during inversion in developing Volvox embryos and across developing Drosophila eye discs. Morphogenetic waves may be best pursued by imaging their calcium with aequorins.     

Fast calcium waves

Calcium waves are propagated in five main speed ranges which cover a billion-fold range of speeds. We define the fast speed range as 3-30μm/s after correction to a standard temperature of 20°C. Only waves which are not fertilization waves are considered here. 181 such cases are listed here. These are through organisms in all major taxa from cyanobacteria through mammals including human beings except for those through other bacteria, higher plants and fungi. Nearly two-thirds of these speeds lie between 12 and 24μm/s. We argue that their common mechanism in eukaryotes is a reaction-diffusion one involving calcium-induced calcium release, in which calcium waves are propagated along the endoplasmic reticulum. We propose that the gliding movements of some cyanobacteria are driven by fast calcium waves which are propagated along their plasma membranes. Fast calcium waves may drive materials to one end of developing embryos by cellular peristalsis, help coordinate complex cell movements during development and underlie brain injury waves. Moreover, we continue to argue that such waves greatly increase the likelihood that chronic injuries will initiate tumors and cancers before genetic damage occurs. Finally we propose numerous further studies.     

Standing waves and traveling waves distinguish two circuits in visual cortex

The visual cortex represents stimuli through the activity of neuronal populations. We measured the evolution of this activity in space and time by imaging voltage-sensitive dyes in cat area V1. Contrast-reversing stimuli elicit responses that oscillate at twice the stimulus frequency, indicating that signals originate mostly in complex cells. These responses stand clear of the noise, whose amplitude decreases as 1/frequency, and yield high-resolution maps of orientation preference and retinotopy. We first show how these maps are combined to yield the responses to focal, oriented stimuli. We then study the evolution of the oscillating activity in space and time. In the orientation domain, it is a standing wave. In the spatial domain, it is a traveling wave propagating at 0.2-0.5 m/s. These different dynamics indicate a fundamental distinction in the circuits underlying selectivity for position and orientation, two key stimulus attributes.     

Similarities and differences in the propagation of slow waves and peristaltic waves

The relationship between slow waves and peristaltic reflexes has not been well analyzed. In this study, we have recorded the electrical activity of slow waves together with that generated by spontaneous peristaltic contractions at 240 extracellular sites simultaneously. Recordings were made from five isolated tubular and six sheet segments of feline duodenum superfused in vitro. In all preparations, slow waves propagated as broad wave fronts along the longitudinal axis of the preparation in either the aborad or the orad direction. Electrical potentials recorded during peristalsis (peristaltic waves) also propagated as broad wave fronts in either directions. Peristaltic waves often spontaneously stopped conducting (46%), in contrast to slow waves that never did. Peristaltic waves propagated at a lower velocity than the slow waves (0.98 +/- 0.25 and 1.29 +/- 0.28 cm/s, respectively; P < 0.001; n = 24) and in a direction independent of the preceding slow wave direction (64% in the same direction, 46% in the opposite direction). In conclusion, slow waves and peristaltic waves in the isolated feline duodenum seem to constitute two separate electrical events that may drive two different mechanisms of contraction in the small intestine.     

Simulation of electrocortical waves

 We report simulations of the electrocorticogram of the cat and human, based on estimates of fibre range, fibre density, axonal and dendritic delays, and cortical synaptic density. The long-range cort ical connections of real cortex were simplified to couplings of symmetric density, decreasing in density with range, on a closed (toroidal) surface. Non-specific cortical activation was modelled as a diffuse global input and specific sensory input as a lo calised white noise input. Spectral properties of output included peak densities at the frequencies of the major cerebral rhythms, a ‘1/f ’ spectral envelope and ‘shift to the right’ with increasing total power as n on-specific activation increased. Steady-state travelling waves with a velocity of 5–7 m/s (human) and <1 m/s (cat) were produced. Frequency/wavenumber analysis revealed an additional class of activity with wavenumbers independent o f temporal frequency. All these findings accord qualitatively and quantitatively with existing physiological results. Global resonant modes were not prominent, but the simulations obey a restricted case of the analytical results of Nunez (1994). Wave/puls e relations resemble the findings of Freeman (1975). Received: 8 July 1994/Accepted in revised form: 15 September 1994     

Gene-culture waves of advance

Major genetic and cultural changes may have been coupled during hominid evolution. Since hominids have had a wide geographical distribution for about one million years, any mutant gene or cultural innovation that became established had to spread from its origin. A pair of nonlinear diffusion equations is derived which models the propagation of a mutant gene and a cultural innovation. Both are assumed to originate in the same locality along a linear habitat. The mutant gene and its allele are semidominant, and the two cultural choices are transmitted according to what I call the logistic attraction-repulsion model. The genes influence cultural choice, and the two interact to determine fitness. Of particular interest is the case in which mutant gene and cultural innovation are mutually dependent, neither being able to spread without the other. Each equation of the pair is similar in form to Fisher's equation, with a linear function of the other dependent variable replacing the constant coefficient in the reaction term. The partial differential equations are solved numerically to obtain the asymptotic speeds. Their form also suggests an heuristic argument which has proved useful, but I have been unable to obtain any analytic results. The waves of the system are shown to be of two types, synchronous and asynchronous. When genes and culture are mutually dependent, synchronous travelling waves can exist. However, their existence is dependent on initial conditions, and the speed of propagation is slow.     

Electromagnetic van Kampen waves

The theory of van Kampen waves in plasma with an arbitrary anisotropic distribution function is developed. The obtained solutions are explicitly expressed in terms of the permittivity tensor. There are three types of perturbations, one of which is characterized by the frequency dependence on the wave vector, while for the other two, the dispersion relation is lacking. Solutions to the conjugate equations allowing one to solve the initial value problem are analyzed.     

Noise driven evolutionary waves

Adaptation in spatially extended populations entails the propagation of evolutionary novelties across habitat ranges. Driven by natural selection, beneficial mutations sweep through the population in a "wave of advance". The standard model for these traveling waves, due to R. Fisher and A. Kolmogorov, plays an important role in many scientific areas besides evolution, such as ecology, epidemiology, chemical kinetics, and recently even in particle physics. Here, we extend the Fisher-Kolmogorov model to account for mutations that confer an increase in the density of the population, for instance as a result of an improved metabolic efficiency. We show that these mutations invade by the action of random genetic drift, even if the mutations are slightly deleterious. The ensuing class of noise-driven waves are characterized by a wave speed that decreases with increasing population sizes, contrary to conventional Fisher-Kolmogorov waves. When a trade-off exists between density and growth rate, an evolutionary optimal population density can be predicted. Our simulations and analytical results show that genetic drift in conjunction with spatial structure promotes the economical use of limited resources. The simplicity of our model, which lacks any complex interactions between individuals, suggests that noise-induced pattern formation may arise in many complex biological systems including evolution.     

Surface waves of Min-proteins

In the bacterium Escherichia coli, the Min-proteins show pronounced pole-to-pole oscillations. They are functional for suppressing cell division at the cell ends, leaving the center as the only possible site for division. Analyzing different models of Min-protein dynamics in a bacterial geometry, we find waves on the cytoplasmic membrane. Interestingly, the surface wave solutions of different models belong to different symmetry classes. We suggest that experiments on Min-protein surface waves in vitro are helpful in distinguishing between different classes of models of Min-protein dynamics.     

Surfing on calcium waves

A key question in brain development is how migration of neuronal precursors is guided to establish the ordered laminar layers. In the April 20, 2007 issue of Cell, Guan et al. show that the leading process of migrating cerebellar granule neurons senses repulsive Slit molecules by generating a Ca(2+) wave that propagates to the soma to cause reversal of cell polarity and migration.