鹿科动物线粒体控制区序列分析与系统进化

通过测定鹿科麂亚科中的小麂、赤麂和黑麂的线粒体全基因组,从而定位它们的控制区,并从GenBank获得鹿科另外3个亚科9种动物的线粒体控制区全序列。利用MEGA软件计算了各物种控制区序列的碱基组成、遗传距离和遗传相似度,通过比较序列同源性,以羊线粒体控制区序列为外群,构建NJ分子系统树,探讨了鹿科4个亚科12种动物的系统进化关系。序列分析表明,鹿科12种动物控制区序列的碱基长度在909～1049bp之间,A T含量约占62．06％,其中363个核苷酸位点存在变异(约占34％)。系统进化关系结果表明：(1)以线粒体控制区构建的鹿科12种动物分子系统树基本与NCBI分类一致;(2)美洲鹿亚科驼鹿属驼鹿在鹿科这12种动物中处于最为原始的地位;(3)小麂比赤麂和黑麂更为原始;(4)獐亚科獐属的獐与美洲鹿亚科狍鹿属的狍鹿和美洲狍鹿聚为一支。     

基于红外相机技术的黑麂活动节律

动物的活动节律是行为生态学中的一个重要内容,它主要研究动物在不同时间内的活动强度及变化规律(原宝东和孔繁繁,2011).黑麂(Muntiacus crinifron)隶属偶蹄目(Artiodactyla)鹿科(Cervidae)麂属(Muntiacus),属国家一级保护动物,其分布范围十分狭小,目前该种群仅存于安徽、浙江、江西和福建4省,且栖息地成小种群岛屿状分布(盛和林,1987).     

野生鹿科动物的寄生蠕虫

鹿科动物是我国动物资源中经济价值较大的一类经济动物。在陕西省境内,野生的有林麝(Moschus berezouskii)、毛冠鹿(Elaphodus cephalophus)、小麂(Muntiacus reevesi)和(鹿包)(Capreolus capreolus);驯养的除梅花鹿和马鹿外,林麝驯养已初见成效。但鹿科动物的寄生虫和寄生虫病,却广泛危害其种群发展及开发利用。养獐(林麝)场和养鹿场的寄生蠕虫,程度不同地     

基于线粒体16S rRNA基因探讨鹿科动物系统发生关系

鹿类动物的系统演化关系一直存在争议,特别是獐亚科的设立与否.通过测定獐的线粒体16S rRNA基因,并从GenBank获得鹿类另外14种动物的线粒体16S rRNA基因全序列,以水牛和绵羊作双外群,构建系统进化树,探讨鹿类动物系统发生关系及獐亚科的有效性.结果分析表明:(1)支持鹿科分为鹿亚科、麂亚科、獐亚科和美洲鹿亚科,麝科成立;(2)獐亚科有效,支持獐与原属美洲鹿亚科狍共同组成獐亚科;(3)毛冠鹿的分类地位还有待进一步确定.     

黑麂线粒体基因组序列分析

采用PCR产物直接测序方法测定了黑麂线粒体基因组全序列 ,初步分析了其基因组特点并定位了各基因的位置 .结果显示 :黑麂的线粒体基因组全序列长度为 1 6 35 7bp ,可编码 2 2种tRNA、2种rRNA、1 3种蛋白质 ,碱基组成及基因位置与小麂、赤麂和其它哺乳类动物的线粒体基因组相似 ;模拟电子酶切图谱与先前的报道基本一致 ;基于细胞色素b的全基因序列 ,分别以最大简约法、N J法、最大似然数法与其它 1 4种鹿类动物的相应序列进行了聚类分析 ,构建出相似的系统进化树 :初步确定了麂亚科动物在鹿科中处于与鹿亚科、北美鹿亚科并列的进化地位 .在此基础上 ,进一步以黑麂、赤麂、小麂的线粒体编码RNA和编码蛋白质的基因序列构建系统进化树 ,分析了三者的亲缘关系 .结果表明 :黑麂和赤麂亲缘关系较近 ,是较新的物种 ,而小麂是较为原始的物种     

马鹿和梅花鹿的鹿茸、鹿角组织结构初步比较观察

马鹿和梅花鹿(Cervus elaphus Linnaeus和Cervus nippon Temminck)主要分布于我国东北地区,为我国二类和一类保护动物。它们不仅是肉食和观赏动物;而且,其茸和角又是我国名贵中药材之一。鹿茸为鹿科动物马鹿和梅花鹿雄性未骨化幼角。鹿角是鹿茸发育晚期的骨化蜕角或砍角。为了解鹿茸、鹿角发育规律,区别其它动物角组织,提高鹿茸、鹿角药用     

海南坡鹿

海南坡鹿(Cervus eldi hainanus) 別名:泽鹿、“梅花鹿”、眉角鹿、暹罗鹿 一、分布与数量 我国鹿科动物有19种,在南方热带性地区出产的只有水鹿(C.unicolor)、赤鹿(Muntiacus muntzak)、豚鹿(Axis porcinus)和坡鹿等数种,后者在我国仅分布于海南岛200米以下低海拔的坡地,故名坡鹿。其种的分布范围则包括越南、泰国、缅甸和印度的部分地区。     

重庆巫山更新世反刍类臼齿的新类型及伴生的鹿化石(英文)

新月形颊齿是反刍类的鉴定特征之一,而反刍类的上臼齿通常由4个新月形主尖组成。2008年在重庆市巫山县庙宇镇新城村堰头溪地点的一建筑项目中从黏土质地基中挖掘出一件带有上颊齿的反刍类上颌骨残段,标本上的上臼齿由5个新月形主尖组成。伴生的其他动物有更新世麂属未定种(Muntiacus sp.)和黑鹿(Cervus(Rusa) unicolor)。形态学研究显示堰头溪标本的上臼齿代表一种新的新月形上臼齿类型,它不同于见于部分胼足类(tylopods)的5尖型上臼齿,例如古近纪的石炭兽类和xiphodontids以及分布于渐新世和中新世的真兽类。堰头溪标本上臼齿中的第五个主尖被诠释为原尖基部舌侧的齿带过度发育而成,与胼足类的舌侧主尖非同源关系。堰头溪标本代表一个新的种类,其分类位置暂定为麂亚科的麂属,即黄氏麂Muntiacus?huangi sp.nov.。     

山西天镇辛窑子早更新世鹿科化石新材料(英文)

20世纪80年代在桑干河盆地一带考察泥河湾层时,在山西省天镇县南高崖乡的台家坪、水冲口和大庄科的辛窑子沟一带发现了很多哺乳动物化石地点并出土了很多哺乳动物化石。最近对其中鹿科化石的研究鉴定出7个种:步氏麂(Muntiacus bohlini)、化德祖鹿相似种(Cervavitus cf. C. huadeensis)、山西轴鹿(Axis shansius)、华丽日本鹿(Nipponicervus elegans)、始麋鹿(Elaphurusdavidianuspredavidianus)、双叉麋鹿(E.bifurcatus)及赤鹿(Cervus(Elaphus)elaphus)。其中前6个种产自台家坪和水冲口化石地点的泥河湾组中,层位相当于欧洲的中、晚维拉方期,即早更新世,而赤鹿产自大庄科化石地点,层位目前还不确定,但可能也是泥河湾组。因此在辛窑子沟一带的早更新世目前发现的鹿科化石至少有6个种。其中的化德祖鹿相似种和山西轴鹿是从晚新近纪残留下来的种类,而步氏麂、华丽日本鹿、始麋鹿和双叉麋鹿是早更新世出现的新种类。如果大庄科地点的层位可以确定为早更新世的话,赤鹿的最早记录则可以回溯到早更新世,其鹿角的演化是始于无冰枝,然后出现冰枝。另外,在中国大陆和日本列岛都发现过麋鹿和日本鹿化石,进一步说明在早更新世期间海平面曾经下降很多,使得大陆的一些鹿类得以迁徙到列岛上。最后,数量较多的低冠鹿科化石标本指示桑干河盆地一带在早更新世存在一定范围的森林环境。     

鹿科动物血清蛋白质的SDS—聚丙烯酰胺凝胶电泳分析

本文对鹿科动物(黑鹿、白唇鹿、黇鹿、白黇鹿、麋鹿、东北马鹿、甘肃马鹿、中亚马鹿、日本梅花鹿、东北梅花鹿、狍)的2个亚科、4个属、7个种进行了血清蛋白质的SDS—聚丙烯酰胺凝胶电泳测定。结果表明,鹿的血清蛋白在该种电泳方法中,共可分辨出分子量在1.24—9.5×10~4范围内的53个蛋白区带。其中最少的是白唇鹿,黇鹿为24条,最多的是日本梅花鹿为35条。     

A phylogenetic comparison of red deer and wapiti using mitochondrial DNA

A phylogeny was constructed for red deer/wapiti (Cervus elaphus) subspecies using sequence data from the control region of mitochondrial DNA (mtDNA). The tree was rooted using Cervus nippon (sika deer), Cervus albirostris (Thorold's white-lipped deer), and several Odocoileinae species. A division between the mtDNA haplotypes of red deer (European) and wapiti (Asian/North American) corresponds to subspecies found on opposite sides of the Himalayan Mountains and Gobi, which suggests wapiti should be reconsidered for the status of C. canadensis. Using parsimony and distance analysis, red deer and wapiti are derived from a single recent common ancestor, which is consistent with current taxonomy that recognizes the subspecies of Cervus elaphus as monophyletic group. However, maximum-likelihood analysis using weighted transitional substitutions caused red deer to form a sister group to sika deer (Cervus nippon) and wapiti. A phenetic comparison revealed wapiti also share more nucleotide similarities with sika deer, although approximately 5% sequence divergence separates wapiti, sika, and red deer. Phylogenetic evidence from the cytochrome b sequences corroborated observations from the control region. Observations from this study suggest that the species status of wapiti should be reinstated.     

Phylogenetic relationships among european red deer, wapiti, and sika deer inferred from mitochondrial DNA sequences

We determined the mitochondrial cytochrome b gene sequences (1140 bp) of one subspecies of the European red deer (Cervus elaphus in Europe), three subspecies of the wapiti (C. elaphus in Asia and North America), and six subspecies of the sika deer (C. nippon in Japan). Our phylogenetic analysis revealed the monophyly of the European red deer, that of the wapiti, and that of the sika deer. The wapiti, however, was shown to be more closely related to the sika deer than to the European red deer. This is in conflict with traditional morphological results, which suggest a close sister group relationship between the wapiti and the European red deer. The divergence time between the European red deer and the wapiti plus the sika deer was estimated to be approximately 0.80 Ma, and that between the wapiti and the sika deer was estimated to be 0.57 Ma. The sika deer was subdivided into two subspecies groups, and the wapiti was also found to consist of an Asian group and a North American group.     

安徽麝线粒体DNA细胞色素b基因全长序列分析

自80年代安徽麝[Moschus (moschiferus/berezovskii)anhuiensis]被发现以来,其分类地位一直众说纷纭。在本研究中,我们对安徽麝模式皮张标本进行了线粒体DNA细胞色素b基因全长序列分析。研究结果表明,安徽麝同麝属中其他种的遗传分化已经相当明显.分子系统学的分析表明,安徽麝是一个单系群,它同麝属其他种的DNA序列差异已达到种间分化的程度。因此,线粒体DNA序列的证据支持将安徽麝列为麝属中一有效种（Moschus anhuiensis),而不是前人认为的原麝或林麝的亚种。     

Evaluation of introgressive hybridization among Cervidae in Japan's Kinki District via two novel genetic markers developed from public NGS data

Hybridization and backcrossing of native populations with introduced species can lead to introgression and genetic alteration. In this study, we evaluated introgression in 43 deer from a potential hybrid zone around Okinoshima Island, Kinki District, Japan. This region witnessed the migration of a hybrid population (cross between the Formosan sika deer [Cervus nippon taiouanus] and other deer species) that could potentially breed with the native Japanese sika deer (C. n. centralis). We used an existing genetic marker for the mitochondrial cytochrome b gene and two novel markers for nuclear DNA, developed using publicly available next‐generation sequencing data. We identified one mainland deer with a mitochondrial haplotype identical to that of the Formosan sika deer as well as nuclear heterozygous sequences identical to those of Formosan and Japanese sika deer. This suggests that the mainland deer is a hybrid offspring of the Okinoshima population and native deer. However, only Japanese sika deer sequences were found in the other 42 samples, indicating limited introgression. Nevertheless, hybridization pre‐ and postintroduction in the Okinoshima population could cause multispecies introgression among Japanese sika deer, negatively affecting genetic integrity. We developed a simple test based on polymerase chain reaction–restriction fragment length polymorphism to detect introgression in natural populations. Our method can accelerate genetic monitoring of Japanese sika deer in Kinki District. In conclusion, to prevent further introgression and maintain genetic integrity of Japanese sika deer, we recommend establishing fences around Okinoshima Island to limit migration, besides a continued genetic monitoring of the native deer.     

A mitochondrial control region and cytochrome b phylogeny of sika deer (Cervus nippon) and report of tandem repeats in the control region

Sika deer (Cervus nippon Temminck) are endemic to mainland and insular Asia. Numerous subspecies have been named, but they are not quantitatively well defined. Portions of the mitochondrial cytochrome b gene (450 bp) and control region (512 bp) were sequenced from 28 individuals belonging to five sika subspecies and two Cervus elaphus subspecies. Phylogenetic trees constructed using these sequences clearly demonstrated that sika are monophyletic with respect to C. elaphus. A survey of variation in the control region showed that approximately half the variation occurred in a 100-base segment between positions 150 and 250 in the left domain of the control region. Within this region there were three tandemly repeated copies of a 39-base motif. In addition, two of the samples (C. n. aplodontus and C. n. hortulorum) contained, respectively, two and four additional copies of the repeated motif.     

Sika deer presence affects the host–parasite interface of a Japanese land leech

Since the 1990s, increasing populations of a blood feeding land leech (Haemadipsa japonica) have become a serious issue in several Japanese prefectures, and it may be caused by the increases in sika deer (Cervus nippon) populations seen over the last quarter of the century. Therefore, this study aimed to reveal the host animal species of H. japonica using iDNA (vertebrate DNA isolated from invertebrates) and to test the hypothesis that the increasingly widespread distribution of sika deer results in increased H. japonica populations through changes to the host–parasite interface. We amplified mitochondrial DNA 16S ribosome RNA fragments from iDNA isolated from the blood clots of H. japonica collected across Japan. We identified 17 host animal species, including four orders of Mammalia (Carnivora, Artiodactyla, Rodentia, and Lagomorpha) and two orders of Amphibia (Caudata and Anura). The sika deer was the dominant host species of H. japonica. Additionally, the host animal species composition of H. japonica differed according to the presence or absence of sika deer. In the sites where sika deer were not found, Anura (frog) species were the most commonly identified hosts of H. japonica. These results suggest that the increases in H. japonica populations might have occurred via a change in host preference to sika deer. This change might be driven by the increases in sika deer populations and subsequent increase in the frequency that H. japonica uses the sika deer as easy prey, as well as by sika deer providing more reproductive energy per blood meal than blood meal from frog species. The present study suggests that a more widespread distribution of sika deer resulted in an increase in H. japonica through a change in the host–parasite interface. Therefore, management that focuses on decreasing sika deer populations would likely be an effective method for the reduction of H. japonica populations.     

Tracing the genetic roots of the sika deer Cervus nippon naturalized in Germany and Austria

To determine the geographical origin of the sika deer (Cervus nippon) naturalized in Germany and Austria, we sequenced the mitochondrial control region for 214 individuals. Adding these sequences to previously published data from native sika deer across its natural geographic range, the total comes to 245, extending what is already known about the geographical variation in this sequence in Cervus nippon. From these sequences, a neighbour-joining tree was constructed. This tree showed that the 49 different mitochondrial (mt)DNA types are grouped into three distinct phylogenetic clusters, which correspond to different geographic areas. Similarities between sequences of the naturalized sika deer and those described from native sika deer from both southern Honshu, Kyushu with associated islands, and northern Honshu suggest that the ancestors of the sika deer populations in Germany and Austria originated from the Japanese archipelago. In contrast, there is no evidence that female sika deer of Chinese, Taiwanese or north Vietnamese origin were involved in the ancestry of the present sika population in Germany and Austria.     

Official Hunting Patterns, and Trends in the Proportions of Sika (

Records of official deer control operations in the Kaweka Range between 1958 and 1988 have been used to describe the pattern of official hunting, to indicate changes in hunting efficiency, and to show trends in the proportions of sika and red deer in sympatric populations. The pattern of hunting largely reflected wild animal control priorities, and to some extent the resources available. Whereas hunting effort was concentrated in Block 1 (of three) during the 1960s to protect catchment values, changes in the rationale for wild animal control and the efforts of commercial and recreational hunters in the more accessible areas led to a more even spread of the hunting effort from the early 1970s. Hunting efficiency also varied between the three h unting blocks, probably reflecting differences in the ease with which particular habitats could be hunted. A decline in hunting efficiency over the study period was interpreted as an overall decrease in the density of the deer population. The proportion of sika among the deer shot in the Kaweka Range has increased steadily from about 10-20% in the early 1960s to 70% in 1987-88. A competitive advantage over red deer because of their different digestive physiology is suggested as the main reason. The most rapid increases in the proportion of sika were associated with two Peaks in commercial venison and live-capture operations that concentrated on red deer, indicating that commercial hunting has also been a factor. It is likely that sika will continue icreasing in proportion to red deer in areas already inhabited. In addition, sika will probably continue to disperse into new areas as they competitively displace red deer.     

用距离取样技术估算森林生境中的梅花鹿密度

作者于 1999年 9、 10月在日本国日光国立公园的一个梅花鹿 (Cervusnippon)高密度区域实施了 16次夜间探照样带距离法取样调查。采用车载探照记数和激光测距仪测距 ,记录了梅花鹿的结群大小和距样带中心样线的垂直距离。应用距离取样技术 (Distancesamplingtechnique ,DST)计算的结果表明 ,梅花鹿的密度为12 5 8头 /km2 (95%CI 10 0 7-157 3 ) ,在两侧 80m宽度的调查样带内梅花鹿的总发现率为 52 5% ;对线样带法的传统动物密度计算方法 (King s ,Hayne s ,Leopold s ,Gates sⅠ ,Gates sⅡ ,Gates sⅢ和Frye s方法 )的结果验证表明 ,这些传统密度计算方法过高估算梅花鹿的密度 ,其结果为距离取样技术 (DST)计算结果的 1 76(Frye′s法 ) -6 10 (Hayne′s法 )倍。因此 ,作者建议在使用线样带法测定动物密度时应尽量避免使用这些传统计算方法 ;不同地区间及同一地区不同季节间应用线样带法调查得到的动物个体记数值之间的比较存在偏差 ,应该使用距离取样技术计算动物的密度