Peaks of in situ N2O emissions are influenced by N2O‐producing and reducing microbial communities across arable soils

Agriculture is the main source of terrestrial N₂O emissions, a potent greenhouse gas and the main cause of ozone depletion. The reduction of N₂O into N₂ by microorganisms carrying the nitrous oxide reductase gene (nosZ) is the only known biological process eliminating this greenhouse gas. Recent studies showed that a previously unknown clade of N₂O‐reducers (nosZII) was related to the potential capacity of the soil to act as a N₂O sink. However, little is known about how this group responds to different agricultural practices. Here, we investigated how N₂O‐producers and N₂O‐reducers were affected by agricultural practices across a range of cropping systems in order to evaluate the consequences for N₂O emissions. The abundance of both ammonia‐oxidizers and denitrifiers was quantified by real‐time qPCR, and the diversity of nosZ clades was determined by 454 pyrosequencing. Denitrification and nitrification potential activities as well as in situ N₂O emissions were also assessed. Overall, greatest differences in microbial activity, diversity, and abundance were observed between sites rather than between agricultural practices at each site. To better understand the contribution of abiotic and biotic factors to the in situ N₂O emissions, we subdivided more than 59,000 field measurements into fractions from low to high rates. We found that the low N₂O emission rates were mainly explained by variation in soil properties (up to 59%), while the high rates were explained by variation in abundance and diversity of microbial communities (up to 68%). Notably, the diversity of the nosZII clade but not of the nosZI clade was important to explain the variation of in situ N₂O emissions. Altogether, these results lay the foundation for a better understanding of the response of N₂O‐reducing bacteria to agricultural practices and how it may ultimately affect N₂O emissions.     

Effect of conventional versus mechanized sugarcane cropping systems on soil organic carbon stocks and labile carbon pools in Mauritius as revealed by 13C natural abundance

Aims

Maintenance of adequate levels of soil organic carbon (SOC) is crucial for the biological, chemical and physical functioning of soils. This study was conducted (i) to determine the impact of long-term sugarcane monoculture on total SOC stocks and on its labile fractions and (ii) to quantify the loss of original SOC and the accretion of sugarcane-derived C following the adoption of new management practices namely de-rocking/land grading and mechanized harvesting.

Methods

Five study sites representing the five major soil groups under sugarcane in Mauritius were selected with a classical “paired-plot” design adopted. In this design, two sites with similar initial conditions were developed in different ways over time. One represents the reference soil (virgin land with predominantly C₃ type vegetation) and the other represents one of the following cropping treatments: (i) fields continuously cultivated with sugarcane for more than 25 or 50 years without de-rocking or land grading, (ii) fields under long-term sugarcane but having undergone de-rocking and land grading for mechanized harvesting in the last 3 years. Soil samples were taken to a depth of 50 cm and analysed for total organic C, labile C, ¹³C natural abundance, bulk density and stone content.

Results

Changes in SOC stock in the 0–50 cm profile following >50 years of cane cropping were not significant (P?>?0.05) compared to virgin land at any site. Soil δ¹³C values revealed that long-term sugarcane cultivation resulted in a depletion of original SOC by 34 to 70 %. However, this loss was fully compensated by C input from sugarcane residues at all sites studied resulting in no net change in SOC stock. Adoption of mechanized harvest did not have any detrimental effect on SOC stocks due to C inputs from crop residues. However, long-term sugarcane cultivation resulted in significant decline in a labile C (KMnO₄-oxidizable) fraction.

Conclusion

Despite the large losses of original C following conversion from forest to sugarcane, long-term sugarcane cultivation resulted in sequestration of sugarcane-derived C which adequately compensated these losses. Moreover, intensive de-rocking and land grading preceding mechanized harvesting did not have any detrimental effect on SOC stocks. However, the quality of sugarcane soils, as indicated by a decline in labile C, could be degraded.     

Bacterial,archaeal and eukaryal community structures throughout soil horizons of harvested and naturally disturbed forest stands

Disturbances caused by timber harvesting have critical long‐term effects on the forest soil microbiota and alter fundamental ecosystem services provided by these communities. This study assessed the effects of organic matter removal and soil compaction on microbial community structures in different soil horizons 13 years after timber harvesting at the long‐term soil productivity site at Skulow Lake, British Columbia. A harvested stand was compared with an unmanaged forest stand. Ribosomal intergenic spacer profiles of bacteria, archaea and eukarya indicated significantly different community structures in the upper three soil horizons of the two stands, with differences decreasing with depth. Large‐scale sequencing of the ribosomal intergenic spacers coupled to small‐subunit ribosomal RNA genes allowed taxonomic identification of major microbial phylotypes affected by harvesting or varying among soil horizons. Actinobacteria and Gemmatimonadetes were the predominant phylotypes in the bacterial profiles, with the relative abundance of these groups highest in the unmanaged stand, particularly in the deeper soil horizons. Predominant eukaryal phylotypes were mainly assigned to known mycorrhizal and saprotrophic species of Basidiomycetes and Ascomycetes. Harvesting affected Basidiomycetes to a minor degree but had stronger effects on some Ascomycetes. Archaeal profiles had low diversity with only a few predominant crenarchaeal phylotypes whose abundance appeared to increase with depth. Detection of these effects 13 years after harvesting may indicate a long‐term change in processes mediated by the microbial community with important consequences for forest productivity. These effects warrant more comprehensive investigation of the effects of harvesting on the structure of forest soil microbial communities and the functional consequences.     

Harvesting Systems,Soil Cultivation,and Nitrogen Rate Associated with Sugarcane Yield

The adoption of mechanical harvesting of green cane gives rise to concerns as to whether systems developed under burnt cane harvesting are applicable to a green cane harvesting system. In particular, tillage, which is an integral part of the burnt cane system, may no longer be necessary, and the nitrogen fertilizer rates required may need to be replaced due to the large amounts of organic matter being returned to the soil after green cane harvesting. Mechanical harvesting is relatively new in Brazil and little is known about its effect on other sugarcane production strategies. This work aimed to evaluate sugarcane performance under not only different harvesting and cultivation systems, but also different nitrogen fertilizer rates over a 3-year period. The experimental design was a split plot with harvesting systems (burnt vs. green) as main plots, cultivation (interrow vs. no cultivation) as sub plots, and nitrogen rates as sub-sub plots. The harvesting systems produced similar sugarcane yields throughout the experimental period, which demonstrates that the harvest systems do not influence sugarcane yield. Mechanical tillage practices in interrow after harvesting had no impact on stalk yield or sugar quality, indicating no necessity for this operation in the following crop. Ratoon nitrogen fertilization promoted an increase of stalk and sugar yield, with highest yields obtained at the rate of 130 kg ha^?1 N. However, there was no interaction between harvesting system and nitrogen rate.     

Successional patterns of key genes and processes involved in the microbial nitrogen cycle in a salt marsh chronosequence

Here, we investigated the patterns of microbial nitrogen cycling communities along a chronosequence of soil development in a salt marsh. The focus was on the abundance and structure of genes involved in N fixation (nifH), bacterial and archaeal ammonium oxidation (amoA; AOB and AOA), and the abundances of genes involved in denitrification (nirS, nirK, nosZ). Potential nitrification and denitrification activities were also measured, and increases in nitrification were found in soils towards the end of succession, whereas denitrification became maximal in soils at the intermediate stages. The nifH, nirK and nirS gene markers revealed increases in the sizes of the respective functional groups towards the intermediate stage (35 years), remaining either constant (for nifH) or slightly declining towards the latest stage of succession (for nirK and nirS). Moreover, whereas the AOB abundance peaked in soils at the intermediate stage, that of AOA increased linearly along the chronosequence. The abundance of nosZ was roughly constant, with no significant regression. The drivers of changes in abundance and structure were identified using path analysis; whereas the ammonia oxidizers (AOA and AOB) showed patterns that followed mainly N availability, those of the nitrogen fixers followed plant diversity and soil structure. The patterns of denitrifiers were group-dependent, following the patterns of plant diversity (nirK and nirS) and belowground shifts (nosZ). The variation observed for the microbial groups associated with the same function highlights their differential contribution at different stages of soil development, revealing an interplay of changes in terms of niche complementarity and adaptation to the local environment.     

Higher Abundance of Ammonia Oxidizing Archaea than Ammonia Oxidizing Bacteria and Their Communities in Tibetan Alpine Meadow Soils under Long-term Nitrogen Fertilization

Increasing usage of nitrogen fertilizer for food production has resulted in severely environmental problems of nutrients enrichment. This study aimed to examine the response of ammonia-oxidizing bacteria (AOB) and ammonia-oxidizing archaea (AOA) to a long-term nitrogen fertilization in Tibetan alpine meadow. The abundance and composition of both AOB and AOA were assessed using quantitative real-time PCR, cloning and sequencing techniques based on amoA gene under different fertilization gradient (0, 30, 60, 90, and 120 g m^?2 year^?1). Our results showed that, abundances of AOA amoA genes (ranging from 1.48 × 10⁹ to 2.00 × 10⁹ copies per gram of dry soil) were significantly higher than those of AOB amoA genes (1.25 × 10⁷ to 2.62 × 10⁸ copies per gram of dry soil) under fertilization scenario. The abundance of AOB amoA genes increased with increasing nitrogen fertilization, whereas fertilization had little effect on AOA abundance. Sequences of clone libraries of the different treatments revealed that AOB communities were dominated by representatives of Cluster 4, constituting 48.94–64.44% in each clone library. Sequences of Clusters 9, 1 and 2 were prevalent in soils under higher fertilization. All archaeal amoA sequences recovered were affiliated with the soil/sediment clade and marine sediment clade, and no significant difference was observed on the community structure among different fertilization treatments. Variations in the AOB community structure and abundance were linked to ammonium-N and soil pH induced by different fertilization treatments. These results showed that the abundance and structure of the AOB community respond to the fertilization gradient, not AOA.     

耕作深度对蔗地土壤物理性状及甘蔗产量的影响

探讨蔗地机械化耕作深度对耕层土壤物理性状及甘蔗产量构成因子的影响,阐明深松作业的针对性土壤区位和障碍因子,可为甘蔗良好耕层的构建和土壤改良策略的制定提供科学依据.本研究设置3种深松作业深度(35、40和45 cm),以不深松为对照,对蔗地土壤物理性状(紧实度、容重、含水率、孔隙度、三相容积率)和甘蔗产量构成因素及蔗茎产量等指标进行研究.结果表明: 耕作作业深度与蔗地土壤结构特性及甘蔗产量的改善提升效应呈显著正相关.深松能够打破犁底层,显著降低土壤紧实度和容重,减小机械作业相应的贯入阻力和抗剪强度,尤其对20～30 cm土层的上述因子具有显著改善效应,对甘蔗高产意义重大.深松显著提高了30 cm以内土层的液相容积率,增大了土壤水分库容,使10～30 cm土层的水分指标显著改善.10～30 cm土层是深松对耕层土壤固相容积率改善效应最显著的区位.耕作深度的增加对甘蔗有效茎数、株高、蔗茎产量及蔗糖含量具有显著的促进效应.鉴于蔗区当前较普遍的机具装备水平,我国适宜蔗区实施机械化深松的作业深度标准应不小于40 cm.     

Microbial biomass C and N,and mineralizable-N,in litter and mineral soil under Pinus radiata on a coastal sand: Influence of stand age and harvest management

Microbial biomass C and N, and anaerobically mineralizable-N, were measured in the litter and mineral soil (0–10 cm and 10–20 cm depth) of Pinus radiata plantations in two trials on a nitrogen-deficient coastal sand. The trials comprised (a) stands of different age (1 to 33 years), with five of the seven stands studied being second rotation, and (b) a harvest-management trial, with stands established after different harvesting treatments of the first-rotation trees and understorey development controlled by manual weeding and chemical sprays. The harvest-management stands were sampled in the fifth year after the second-rotation establishment.In the stands of different age, the levels of microbial biomass C and N, and also mineralizable-N, in the litter and mineral soil showed no relationship with tree age and were similar to those in the oldest (33 years) stands of P. radiata. In the harvesting trial, five years after establishment of the second rotation, levels of microbial N and mineralizable-N in the litter and mineral soil were generally lowest where whole trees and the original forest floor had been removed; they were higher in associated plots in which the original forest floor had been removed but fertilizer N was regularly applied. No marked differences were then found between the other harvest treatments, viz. whole-tree harvest, stem-only harvest with slash remaining on site, and stem-only harvest plus extra added slash materials. In each trial, levels of microbial C and N and mineralizable-N were closely related to total C, and especially total N, in 0–10 cm depth mineral soil, but not generally in litter. Respiratory measurements strongly suggest that the microbial populations in mineral soil had a high metabolic activity.On an area basis in the harvest-management trial, total tree N and microbial N in the litter and mineral soil were lowest in stands where the original forest floor had been removed. In this particular treatment, microbial N in the litter plus mineral soil (0–20 cm depth) after five years of second-rotation growth comprised 7.3% of the total ecosystem N; values in the other treatments ranged between 5.6 and 6.0%.Our results emphasise the importance of slash and litter, and probably volunteer shrubs and herbaceous under-storey species, in conserving pools of potentially available N during the early stages of tree development.     

Net greenhouse gas fluxes in Brazilian ethanol production systems

Biofuels are both a promising solution to global warming mitigation and a potential contributor to the problem. Several life cycle assessments of bioethanol have been conducted to address these questions. We performed a synthesis of the available data on Brazilian ethanol production focusing on greenhouse gas (GHG) emissions and carbon (C) sinks in the agricultural and industrial phases. Emissions of carbon dioxide (CO₂) from fossil fuels, methane (CH₄) and nitrous oxide (N₂O) from sources commonly included in C footprints, such as fossil fuel usage, biomass burning, nitrogen fertilizer application, liming and litter decomposition were accounted for. In addition, black carbon (BC) emissions from burning biomass and soil C sequestration were included in the balance. Most of the annual emissions per hectare are in the agricultural phase, both in the burned system (2209 out of a total of 2398 kg C_eq), and in the unburned system (559 out of 748 kg C_eq). Although nitrogen fertilizer emissions are large, 111 kg C_eq ha^?1 yr^?1, the largest single source of emissions is biomass burning in the manual harvest system, with a large amount of both GHG (196 kg C_eq ha^?1 yr^?1). and BC (1536 kg C_eq ha^?1 yr^?1). Besides avoiding emissions from biomass burning, harvesting sugarcane mechanically without burning tends to increase soil C stocks, providing a C sink of 1500 kg C ha^?1 yr^?1 in the 30 cm layer. The data show a C output: input ratio of 1.4 for ethanol produced under the conventionally burned and manual harvest compared with 6.5 for the mechanized harvest without burning, signifying the importance of conservation agricultural systems in bioethanol feedstock production.     

Effects of experimental harvesting of an invasive hybrid cattail on wetland structure and function

Invasive plants, such as the hybrid cattail Typha × glauca, can reduce biodiversity and alter the ability of wetlands to provide critical ecosystem services, including nutrient cycling and carbon storage. Several approaches have been used to reduce Typha dominance and restore invaded wetlands, but long‐term studies assessing benefits of these restoration efforts are limited. A previous study demonstrated that aboveground harvesting of Typha × glauca stems and litter reduced Typha dominance 2 years post‐treatment in a Great Lakes coastal wetland. In the current study, we extended monitoring of experimental aboveground Typha harvest to 4 years post‐treatment and added assessments of treatment effects on soil nutrients, carbon emissions, and microbial community composition. Aboveground harvest treatment resulted in a dramatic reduction in Typha litter cover that persisted for 4 years, increased soil temperature, and increased abundance of the native plant genus Carex. However, aboveground harvest treatment did not significantly reduce Typha abundance, nor did it have significant effects on soil nutrient concentrations, carbon fluxes, or the taxonomic composition of soil microbial communities. We did observe differences in bacterial community composition between plots based on time since Typha invasion, which may indicate some legacy effects of Typha invasion. At the scale of this experiment (4 × 4 m plots), our results indicate that a single aboveground removal of Typha × glauca is not sufficient to restore a heavily invaded freshwater wetland ecosystem, and that periodic harvesting of Typha stems and litter may be required to maintain native plant abundance.     

Short-term Effects of Harvest Technique and Mechanical Site Preparation on Arthropod Communities in Jack Pine Plantations

Arthropods play a key role in the functioning of forest ecosystems and contribute to biological diversity. However, the influence of current silvicultural practices on arthropod communities is little known in jack pine (Pinus banksiana) forests, a forest type comprising a major portion of the Canadian boreal forest. In this study, the effects of silvicultural treatments on arthropod communities were compared to identify those treatments that minimize ecological impacts on arthropods. The influence of harvesting techniques and mechanical site preparations on insect family richness and abundance of arthropods (total, by orders and by trophic groups) was examined in young (three-year-old) jack pine plantations of northern Ontario. Each of the following treatments were conducted in three plots: (1) tree length harvest and trenching; (2) full tree harvest and trenching; (3) full tree harvest and blading; and (4) full tree harvest and no site preparation. Arthropods were collected using sweepnets and pitfall traps over two years. Blading significantly reduced insect family richness, the total abundance of arthropods, abundance of Orthoptera, Heteroptera, Hymenoptera, Diptera, insect larvae, and plant feeders when compared to the other treatments. The use of either full tree or tree length harvesting had similar short-term effects on family richness and the abundance of arthropods. Arthropod diversity declined with increasing post-harvest site disturbance. These results suggest that arthropod communities in the understory and on the ground are reduced most on sites mechanically prepared by blading, but are similar under conditions immediately following either full tree or tree length harvesting. The implications for regenerating jack pine in the boreal forest are discussed.     

不同主伐方式对兴安落叶松(Larix gmelinii)根际土壤理化性质及微生物群落的影响

对内蒙古根河大兴安岭林区1987年（恢复后期）、2013年（恢复前期）的皆伐与渐伐样地以及未采伐对照样地兴安落叶松的根际土壤理化性质、微生物群落结构和多样性进行了分析,旨在揭示不同主伐方式对兴安落叶松根际土壤理化性质以及微生物群落的影响。结果表明,主伐后兴安落叶松根际土壤的理化性质以及微生物群落的变化特征与非根际土壤存在区别,且不同主伐方式在不同恢复时期会对兴安落叶松根际土壤理化性质以及微生物群落产生不同的影响：（1）根际与非根际土壤微生物群落中真菌均比细菌更容易受到土壤理化性质的影响,但是单一种理化性质的改变对根际与非根际土壤微生物群落均不能造成显著影响。（2）相较于未采伐对照样地,皆伐样地恢复前期兴安落叶松根际土壤理化性质、微生物群落结构和多样性没有显著变化。皆伐样地恢复后期,兴安落叶松根际土壤理化性质（总碳、总氮、速效氮、pH）发生了显著变化,导致了微生物量碳氮、真菌磷脂脂肪酸（PLFA）含量显著降低、细菌/真菌显著升高,辛普森多样性指数显著降低。（3）渐伐样地恢复前期兴安落叶松根际土壤总碳、总氮、速效氮含量以及含水量均显著降低,总钾、速效磷含量显著上升,根际土壤微生物量碳含量显著降低。恢复后期,兴安落叶松根际土壤总磷含量显著升高,根际土壤微生物量碳的含量已恢复到渐伐前水平。渐伐干扰对根际土壤各微生物类群PLFA含量、微生物群落结构以及多样性没有显著影响。     

Effects of intensive harvesting on forest floor properties in Betula papyrifera stands in Newfoundland

Abstract. Betula papyrifera (White birch) is a common tree throughout the boreal forest of Canada; makes up 12% of the total tree volume in insular Newfoundland. It forms pure stands after harvesting and wildfire disturbance and it is a common component in most softwood stands. Little is known regarding the environmental impact of whole-tree or conventional harvesting of this species and variation in impact related to variation in soil and site conditions. This study investigates litter and organic matter production and related site ecology in nine medium to high quality Betula papyrifera stands in three locations in central Newfoundland on a variety of land form and drainage conditions. Three sites, Badger West (BW), Moose Pond (MP) and Middleton Lake (ML) were selected. The ML site has the highest quality (with the best height/age ratio, 18 m/60 yr, and height/DBH ratio, 18 m/30 cm, followed by MP and BW. Litter depth on well developed moders or mulls was usually 2 - 3 cm and varied from 1 - 15 cm. Forest floor depths (measured in 324 profiles) rarely reached 20 cm and was commonly 5 - 10 cm; it varied with position and site. Total and available nutrients indicate that B. papyrifera produces one of the highest -quality organic matter types of the local forest types and is important in improving site quality. The mean N-concentration in green foliage (2.21%) and trapped litter (1.03%) was highest at the best quality site ML, followed by MP and BW. The concentration of calcium, 0.85%, was highest at the poorest quality site. Four years after harvesting, litter depth significantly decreased in all sites and treatments with the exception of the BW whole-tree harvest treatment. Total forest floor depth significantly decreased at all sites in the stem-only harvest treatment as well as the MP whole-tree harvest treatment. There was a significant decrease in available nitrogen following harvesting in both treatments at both the MP and BW sites. Change in available phosphorus was insignificant, with the exception of an increase in the MP stem-only harvest treatment. There was a significant decrease in available potassium at both the ML and BW whole-tree harvest treatments, but a significant increase in the stem-only harvest treatments at ML and MP. There was a significant decrease in available calcium in both treatments at both the MP and BW sites.     

Effects of soil compaction and mechanical damage at harvest on growth and biomass production of short rotation coppice willow

The effects of soil compaction and mechanical damage to stools at harvesting on the growth and biomass production of short rotation coppice (SRC) of willow (Salix viminalis L.) were monitored on clay loam (CL) and sandy loam (SL) soils. Moderate compaction, more typical of current harvesting situations did not reduce biomass yields significantly. Even heavy compaction only reduced stem biomass production by about 12% overall; effects were statistically significant only in the first year of the experiment on sandy loam. Heavy compaction increased soil strength and bulk density down to 0.4 m depth and reduced soil available water and root growth locally. Soil loosening treatments designed to alleviate the effects of heavy compaction did not markedly improve the growth of willow on compacted plots. Hence the focus fell on harvesting. Extensive mechanical damage to stools caused a 9% and 21% reduction in stem dry mass on the clay loam and sandy loam soils as a result of fewer stems being produced. The particularly severe effect on the sandy loam soil probably resulted from a combination of dry conditions in the year of treatment, root damage and soil compaction under stools and might have been aggravated by the young age of the plants (1 year) at the time of treatment.     

水位埋深和微地貌对金川泥炭土壤微生物活性及甲烷功能基因的影响

泥炭沼泽是长期储存碳最有效的陆地生态系统。水文特征和微地貌可能会通过调控微生物群落和功能影响泥炭地碳储存。本研究以长白山金川泥炭沼泽为研究对象,选取-10、-1、0、4、10、13、14和18 cm八个水位埋深,并在各水位埋深点采集臌囊薹草(Carexs chmidtii)草丘和丘间微地貌的土壤样品,以探究水位埋深和微地貌对土壤微生物量碳氮、酶活性及甲烷功能基因的影响。结果表明:微生物量碳氮受水位埋深影响因土壤层不同而不同,两者在草丘30~45 cm和丘间0~15 cm土壤层呈显著正相关。土壤碳氮循环相关的酶(β-1,4-葡萄糖苷酶和β-1,4-N-乙酰葡糖胺糖苷酶)活性与水位埋深呈显著正相关且受土壤层调控,磷酸酶活性与水位埋深无关。此外,水位埋深与甲烷还原菌丰度(每克干土的mcrA功能基因拷贝数)呈显著负相关,而与甲烷氧化菌丰度(每克干土的pmoA功能基因拷贝数)呈显著正相关,且水位埋深对甲烷还原菌丰度的影响更大。草丘微地貌显著影响微生物量碳,同为15~30 cm土壤层,其含量表现为草丘>丘间;处于相同海拔的草丘15~30 cm和丘间0~15 cm,其含量表现为丘间>草丘。草丘微地貌也显著影响甲烷氧化菌丰度,同为15~30 cm土壤层,甲烷氧化菌丰度表现为草丘>丘间。本研究表明,泥炭地空间异质性对微生物活性具有重要影响,从定点研究到大尺度估算的尺度放大过程中,应对这一现象充分考虑。     

Wild bee diversity is enhanced by experimental removal of timber harvest residue within intensively managed conifer forest

The use of timber harvest residue as an energy source is thought to have environmental benefits relative to food‐based crops, yet the ecological impact of this practice remains largely unknown. We assessed whether the abundance and diversity of wild bees (Apoidea) were influenced by the removal of harvest residue and associated soil compaction within managed conifer forest in western Oregon, USA. We sampled bees over two years (2014–2015) on study plots that were subjected to five treatments representing gradients in removal of harvest residue and soil compaction. We collected >7,500 bee specimens from 92 distinct species/morphospecies that represented five of the seven bee families. We trapped 3x more individuals in the second year of the study despite identical sampling effort in both years, with most trapped bees classified as ground‐nesting species. Members of the sweat bee family (Halictidae) comprised more than half of all specimens, and the most abundant genus was composed of metallic green bees (Agapostemon, 33.6%), followed by long‐horned bees (Melissodes, 16.5%), sweat bees (Halictus, 15.9%), and bumble bees (Bombus, 13.6%). In both years, abundance and observed species richness were greatest in the most intensive harvest residue treatment, with other treatments having similar values for both measures. Our study indicates that early successional managed conifer forest that has experienced removal of harvest residue can harbor a surprising diversity of wild bees, which are likely to have important contributions to the broader ecological community through the pollination services they provide.     

Optimization of sugarcane farming as a multipurpose crop for energy and food production

Sugarcane is a multipurpose crop whose components may be used, in addition to sugar production, for various energy carriers or end‐products (electricity, liquid biofuels and heat) which enhance its economic potential. For many years, plant breeders and agronomists have focused on increasing sucrose yields per hectare and millers on increasing recoverable sucrose per ton of sugarcane in sugar mills. Attempting to exploit the energy potential of sugarcane more fully, calls for a more holistic approach focusing on both sucrose and lignocellulosic components of sugarcane biomass, and gaining some insight into the management practices required to optimize sugarcane cropping systems in these respects. Such options include genotype selection, harvest date with respect to the crop's growing cycle, crop type (plant crop vs. ratoon crops) and harvesting systems (mechanical vs. manual). The effects of these factors are strongly modulated by climate and soil properties, and these interactions are overall poorly known. Here, we set out to examine sugarcane infield management × environmental interactions with respect to (i) sugarcane yield and partitioning of the aboveground biomass; and (ii) sugarcane milling products (recoverable sucrose yield and amounts of coproducts) and their derived energy carriers. Three Saccharum cv. cultivars (R570, R579 and R585) were planted in three locations on La Reunion Island with contrasting management practices and climatological conditions. Quality characteristics of the samples were assessed by conventional and near infrared spectroscopy methods. Product, coproducts and potential energy production were measured and computed using transfer equations and a mill‐operating model. Yields and quality characteristics from cultivars and harvesting systems were affected differently by environmental factors – low temperature and radiation, and water stress. The current study also provides valuable information on how combinations between environments, genotypes and practices affect yield and partitioning of the aboveground biomass, and food and energy production.     

Contrasting soil fungal community responses to experimental nitrogen addition using the large subunit rRNA taxonomic marker and cellobiohydrolase I functional marker

Human activities have resulted in increased nitrogen inputs into terrestrial ecosystems, but the impact of nitrogen on ecosystem function, such as nutrient cycling, will depend at least in part on the response of soil fungal communities. We examined the response of soil fungi to experimental nitrogen addition in a loblolly pine forest (North Carolina, USA) using a taxonomic marker (large subunit rDNA, LSU) and a functional marker involved in a critical step of cellulose degradation (cellobiohydrolase, cbhI) at five time points that spanned fourteen months. Sampling date had no impact on fungal community richness or composition for either gene. Based on the LSU, nitrogen addition led to increased fungal community richness, reduced relative abundance of fungi in the phylum Basidiomycota and altered community composition; however, similar shifts were not observed with cbhI. Fungal community dissimilarity of the LSU and cbhI genes was significantly correlated in the ambient plots, but not in nitrogen‐amended plots, suggesting either functional redundancy of fungi with the cbhI gene or shifts in other functional groups in response to nitrogen addition. To determine whether sequence similarity of cbhI could be predicted based on taxonomic relatedness of fungi, we conducted a phylogenetic analysis of publically available cbhI sequences from known isolates and found that for a subset of isolates, similar cbhI genes were found within distantly related fungal taxa. Together, these findings suggest that taxonomic shifts in the total fungal community do not necessarily result in changes in the functional diversity of fungi.     

不同土地利用方式土壤氨氧化微生物和反硝化微生物时空分布特征

研究不同土地利用方式下氮循环相关微生物在不同土壤剖面的分布,可为认识和理解土壤氮转化过程提供科学依据。土壤氨氧化微生物和反硝化微生物在调节氮肥利用率、硝态氮淋溶和氧化亚氮(N₂O)排放等方面有着重要作用。以北京郊区农田和林地两种土地利用方式为研究对象,分析土壤氨氧化潜势和亚硝酸盐氧化潜势在0—100 cm土壤剖面上的季节分布(春季和秋季),并通过实时荧光定量PCR方法表征土壤氨氧化和反硝化微生物的时空分布特征。结果表明,农田土壤氨氧化潜势、亚硝酸盐氧化潜势、氨氧化微生物和反硝化微生物丰度均显著高于林地土壤,且随土壤深度增加而显著降低。除氨氧化古菌amoA基因丰度在不同季节间无显著差异外,春季土壤氨氧化细菌(amoA基因)、反硝化微生物nirS、nirK和典型nosZ I基因的丰度均显著高于秋季。土壤有机质、总氮、NH~+₄-N、NO~-₃-N含量与氨氧化微生物和反硝化微生物的功能基因丰度显著相关。综上,不同土地利用方式下土壤氮循环相关微生物的丰度与土壤氮素的可利用性和转化过程紧密相关,研究结果对土壤氮素利用和养分管理提供...     

羊草基因型数目与氮添加对土壤微生物群落的交互影响

物种多样性(或同一物种遗传多样性)减少和氮富集都是影响陆地生态系统进程的主要因素,它们之间的交互作用是否对土壤微生物群落产生显著影响已成为研究者关心的主要科学问题。研究羊草基因型数目(1、2、4三种基因型数目组合)和氮添加(无氮添加、低氮添加和高氮添加3种水平)对土壤微生物群落的总磷脂脂肪酸(PLFA,Phospholipid Fatty Acid)含量、细菌PLFA生物标记含量、真菌PLFA生物标记含量、真菌/细菌比、以及基于每个PLFA生物标记相对含量百分比所得微生物群落的Shannon-Wiener多样性指数和Simpson优势度指数的影响。结果表明:氮添加对细菌PLFA生物标记含量,以及土壤微生物PLFA生物标记的Shannon-Wiener多样性指数和Simpson优势度指数具有显著影响(P0.05);基因型数目对所测变量无显著影响(P0.05),但基因型数目和氮添加的交互作用对细菌PLFA生物标记含量和真菌/细菌比具有显著影响(P0.05)。研究结果为全球变化背景下氮沉降及重要物种种群数量减少对土壤微生物群落的影响提供了科学数据,为合理解释群落动态变化提供了数据支持。