Macroecological patterns of archaeal ammonia oxidizers in the Atlantic Ocean

Macroecological patterns are found in animals and plants, but also in micro‐organisms. Macroecological and biogeographic distribution patterns in marine Archaea, however, have not been studied yet. Ammonia‐oxidizing Archaea (AOA) show a bipolar distribution (i.e. similar communities in the northernmost and the southernmost locations, separated by distinct communities in the tropical and gyral regions) throughout the Atlantic, detectable from epipelagic to upper bathypelagic layers (<2000 m depth). This tentatively suggests an influence of the epipelagic conditions of organic matter production on bathypelagic AOA communities. The AOA communities below 2000 m depth showed a less pronounced biogeographic distribution pattern than the upper 2000 m water column. Overall, AOA in the surface and deep Atlantic waters exhibit distance–decay relationships and follow the Rapoport rule in a similar way as bacterial communities and macroorganisms. This indicates a major role of environmental conditions in shaping the community composition and assembly (species sorting) and no, or only weak limits for dispersal in the oceanic thaumarchaeal communities. However, there is indication of a different strength of these relationships between AOA and Bacteria, linked to the intrinsic differences between these two domains.     

Major imprint of surface plankton on deep ocean prokaryotic structure and activity

Deep ocean microbial communities rely on the organic carbon produced in the sunlit ocean, yet it remains unknown whether surface processes determine the assembly and function of bathypelagic prokaryotes to a larger extent than deep‐sea physicochemical conditions. Here, we explored whether variations in surface phytoplankton assemblages across Atlantic, Pacific and Indian ocean stations can explain structural changes in bathypelagic (ca. 4,000 m) free‐living and particle‐attached prokaryotic communities (characterized through 16S rRNA gene sequencing), as well as changes in prokaryotic activity and dissolved organic matter (DOM) quality. We show that the spatial structuring of prokaryotic communities in the bathypelagic strongly followed variations in the abundances of surface dinoflagellates and ciliates, as well as gradients in surface primary productivity, but were less influenced by bathypelagic physicochemical conditions. Amino acid‐like DOM components in the bathypelagic reflected variations of those components in surface waters, and seemed to control bathypelagic prokaryotic activity. The imprint of surface conditions was more evident in bathypelagic than in shallower mesopelagic (200–1,000 m) communities, suggesting a direct connectivity through fast‐sinking particles that escape mesopelagic transformations. Finally, we identified a pool of endemic deep‐sea prokaryotic taxa (including potentially chemoautotrophic groups) that appear less connected to surface processes than those bathypelagic taxa with a widespread vertical distribution. Our results suggest that surface planktonic communities shape the spatial structure of the bathypelagic microbiome to a larger extent than the local physicochemical environment, likely through determining the nature of the sinking particles and the associated prokaryotes reaching bathypelagic waters.     

Distinct protistan assemblages characterize the euphotic zone and deep sea (2500 m) of the western North Atlantic (Sargasso Sea and Gulf Stream)

Protistan diversity was characterized at three locations in the western North Atlantic (Sargasso Sea and Gulf Stream) by sequencing 18S rRNA genes in samples from euphotic (< or = 125 m) and bathypelagic depths (2500 m). A total of 923 partial-length protistan sequences were analysed, revealing 324 distinct operational taxonomic units (OTUs) determined by an automated OTU-calling program set to 95% sequence similarity. Most OTUs were comprised of only one or two sequences suggesting a large but rare pool of protistan diversity. Many OTUs from both depth strata were associated with recently described novel alveolate and stramenopile lineages while many OTUs from the bathypelagic were affiliated with Acantharea, Polycystinea and Euglenozoa and were not observed in euphotic zone libraries. Protistan assemblages from the euphotic zone and the deep sea were largely composed of distinct OTUs; only 28 of the 324 protistan OTUs were detected in both shallow and deep sea clone libraries. The diversity of protistan assemblages in the deep sea was distinctly lower than the diversity of euphotic zone assemblages. Protistan assemblages from the Gulf Stream were the most diverse for either depth strata. Overall, protistan assemblages from different stations but comparable depths were more similar than the assemblages from different depths at the same station. These data suggest that particular groups of protistan OTUs formed distinct 'shallow' and 'deep-sea' assemblages across widely spaced oceanic locales.     

Life in the unthinking depths: energetic constraints on encephalization in marine fishes

Several hypotheses have been proposed to explain the limitation of brain size in vertebrates. Here, we test three hypotheses of brain size evolution using marine teleost fishes: the direct metabolic constraints hypothesis (DMCH), the expensive tissue hypothesis and the temperature‐dependent hypothesis. Our analyses indicate that there is a robust positive correlation between encephalization and basal metabolic rate (BMR) that spans the full range of depths occupied by teleosts from the epipelagic (< 200 m), mesopelagic (200–1000 m) and bathypelagic (> 4000 m). Our results disentangle the effects of temperature and metabolic rate on teleost brain size evolution, supporting the DMCH. Our results agree with previous findings that teleost brain size decreases with depth; however, we also recover a negative correlation between trophic level and encephalization within the mesopelagic zone, a result that runs counter to the expectations of the expensive tissue hypothesis. We hypothesize that mesopelagic fishes at lower trophic levels may be investing more in neural tissue related to the detection of small prey items in a low‐light environment. We recommend that comparative encephalization studies control for BMR in addition to controlling for body size and phylogeny.     

深远海浮游动物生态学研究进展

深远海浮游生态系统依据水深的差别可以被划分为几个子系统,包括上层、中层、深层和深渊层等。目前大量的研究结果表明在海洋上层,由于光照、温度、海冰和营养盐补充等因素的影响,浮游生物群落往往呈现出显著的时空变化。但在海洋中层及更深的区域,传统观点认为随着水深的增加,海洋的理化环境趋向于稳定,在这一区域生态系统的时空变化要弱于海洋上层。同时受调查技术和经费的限制,人们对于这一广阔区域内浮游生态系统时空变化规律的认识要局限的多。随着我国海洋科学的发展和海洋强国战略的实施,海洋科学研究也逐渐由过去的以近海研究为主发展到当前的近海、边缘海和深远海研究协同发展。但与我国近海浮游生态学过去数十年间积累的大量研究成果相比,我国科学家对深远海,特别是中层、深层和深渊层浮游生态学方面的研究极为缺乏。从大洋浮游动物群落的垂直分布及其变化、种间关系与生态位分化、深海浮游动物群落在碳沉降和生物地球化学循环中的作用等多个角度全面总结了当前国内外深海浮游生态学的研究进展,同时介绍过去十余年来深海浮游生态学研究技术手段上的巨大进步,以期为今后国内同行的研究提供参考和借鉴。     

Into the deep: the functionality of mesopelagic excursions by an oceanic apex predator

Comprehension of ecological processes in marine animals requires information regarding dynamic vertical habitat use. While many pelagic predators primarily associate with epipelagic waters, some species routinely dive beyond the deep scattering layer. Actuation for exploiting these aphotic habitats remains largely unknown. Recent telemetry data from oceanic whitetip sharks (Carcharhinus longimanus) in the Atlantic show a strong association with warm waters (>20°C) less than 200 m. Yet, individuals regularly exhibit excursions into the meso‐ and bathypelagic zone. In order to examine deep‐diving behavior in oceanic whitetip sharks, we physically recovered 16 pop‐up satellite archival tags and analyzed the high‐resolution depth and temperature data. Diving behavior was evaluated in the context of plausible functional behavior hypotheses including interactive behaviors, energy conservation, thermoregulation, navigation, and foraging. Mesopelagic excursions (n = 610) occurred throughout the entire migratory circuit in all individuals, with no indication of site specificity. Six depth‐versus‐time descent and ascent profiles were identified. Descent profile shapes showed little association with examined environmental variables. Contrastingly, ascent profile shapes were related to environmental factors and appear to represent unique behavioral responses to abiotic conditions present at the dive apex. However, environmental conditions may not be the sole factors influencing ascents, as ascent mode may be linked to intentional behaviors. While dive functionality remains unconfirmed, our study suggests that mesopelagic excursions relate to active foraging behavior or navigation. Dive timing, prey constituents, and dive shape support foraging as the most viable hypothesis for mesopelagic excursions, indicating that the oceanic whitetip shark may regularly survey extreme environments (deep depths, low temperatures) as a foraging strategy. At the apex of these deep‐water excursions, sharks exhibit a variable behavioral response, perhaps, indicating the presence or absence of prey.     

Thaliacean distribution and abundance in the northern part of the Levantine Sea (Crete and Cyprus) during the eastern Mediterranean climatic transient, and a comparison with the western Mediterranean basin

First results are presented on the composition, abundance and vertical distribution of the thaliacean fauna in the Levantine basin obtained from stratified tows at three deep-sea sites in 1993: SE off Crete, and SW and NE off Cyprus. Samples with a 10 m²-MOCNESS (mesh size 1.67 mm) were poor in species and specimens as compared to samples with a 1 m²-double-MOCNESS (0.333 mm). Of the 12 species identified, six species belonged to the most abundant Doliolida, predominated by the phorozooids of Doliolum nationalis, five species belonged to the Salpida and one to the Pyrosomatida. Thaliaceans, most abundant by species and numbers SE off Crete, comprised ≤0.2% of the local mesozooplankton standing stocks. Presumably, they did not contribute substantially to the vertical flux generating the locally increased biomass and activity of the microbial benthos at the 4,300 m deep Cretean site. Most doliolids and salps were collected from the epipelagic and upper mesopelagic layers, and appeared to be most abundant close to the deep maximum of chlorophyll-a. Samples below 150 m were rarely rich in specimens, although two species performed diel migrations from the mesopelagic zone into the surface layers where some vertical segregation was evidenced. The aspect of niche separation is discussed.     

Vertical segregation of age-0 and age-1+ polar cod (<Emphasis Type="Italic">Boreogadus saida</Emphasis>) over the annual cycle in the Canadian Beaufort Sea

The offshore marine ecosystem of the Canadian Beaufort Sea faces the double pressure of climate change and industrialization. Polar cod (Boreogadus saida) is a pivotal forage species in this ecosystem, accounting for 95 % of the pelagic fish assemblage. Its vertical distribution over the annual cycle remains poorly documented. Hydroacoustic records from 2006 to 2012 were analysed to test the hypothesis that age-0 polar cod segregate vertically from larger congeners. Trawls and ichthyoplankton nets validated the acoustic signal. Fish length, weight, and biomass were estimated from new regressions of target strength and weight on standard length. Polar cod were vertically segregated by size in all months, with small age-0 juveniles in the epipelagic (<100 m) layer and larger age-1+ deeper in the water column. From December to March, the biomass of age-1+ peaked in a mesopelagic layer between 200 and 400 m. With increasing irradiance from April to July, the mesopelagic layer deepened and extended to 600 m. Starting in July, age-0 polar cod formed an epipelagic scattering layer that persisted until November. From September onward, age-0 left the epipelagic layer to join small age-1+ in the upper mesopelagic layer. Low biomass in the mesopelagic layer from February to September likely resulted from large polar cod settling on the seafloor to avoid diving marine mammals. Longer ice-free seasons, warmer sea-surface temperatures, or an oil spill at the surface would likely impact epipelagic age-0, while mesopelagic age-1+ would be vulnerable to an eventual oil plume spreading over and above the seafloor.     

Diel vertical migrations of bathypelagic perch fry

The behaviour of young‐of‐the‐year (YOY) perch Perca fluviatilis as a dominant species in the assemblage of fry in the pelagic of Slapy Reservoir (Czech Republic), was studied during late May and mid‐June 2002 using acoustic methods and complementary net catches. During the day, perch fry were present simultaneously in littoral, epipelagic and bathypelagic habitats. Bathypelagic perch fry, forming a scattering layer, migrated vertically each day between the epilimnion and hypolimnion, with an amplitude of 11·0 m in May and 12·5 m in June. At dusk, the migratory bathypelagic fry mixed in the epilimnion with non‐migrating epipelagic fry and spent the night close to the thermocline (abundance maximum at 3–4 m in May, 0–2 m in June). In June, shoaling behaviour by some of the bathypelagic perch fry was also observed: the shoaling fry remained higher in the water column than the non‐shoaling fry. Both depths of the scattering layer and the depths of the fry shoals were strongly controlled by the light intensity. The contribution of the bathypelagic part of the population to the total numbers of pelagic perch fry decreased from 28·1% in May to 4·7% in June, while the density of all pelagic perch fry increased (c. 96 000 individuals ha^?1 in May and 142 000 individuals ha^?1 in June). In May, the bathypelagic (average total length, L_T, 11·9 mm) and epipelagic (average L_T 14·6 mm) perch fry differed in size while, in June, the epipelagic fry were divided into two distinct size groups. The more abundant group, of small epipelagic perch fry (average L_T 14·6 mm), was similar in size to the bathypelagic fry (average L_T 14·6 mm) while the less abundant group, of larger epipelagic fry (average L_T 34·4 mm), was similar in size to littoral perch fry (average L_T 35·0 mm). The results suggest that in perch fry three different survival strategies with different risks can be used in the same locality, time and year.     

The zooplankton community in the vicinity of the ice edge,western Weddell Sea,March 1986

Summary The zooplankton community in the vicinity of the ice edge in the west central Weddell Sea was investigated in the late austral summer (March 1986). Sampling was done with two ships operating concurrently, one in the pack ice and the other in the adjcent open sea. Metazoan microzooplankton (<1 mm) was most abundant in the epipelagic zone. It consisted mostly of copepod nauplii and copepods of the genera Oithona, Oncaea, Ctenocalanus and Microcalanus. While species composition was similar in both areas, vertical patterns differed in that the microzooplankton had sparse populations in the upper 50 m under the ice. This may have been related to water temperature which in the upper 50 m under the ice was more than 1°C cooler than in the open sea. Zooplankton in the 1–20 mm size range was dominated by the calanoid copepods Metridia gerlachei, Calanus propinquus and Calanoides acutus which constituted half the biomass in the upper 1000 m. Their populations had highest densities in the upper 150 m, though much of the C. acutus population resided below 300 m. Metridia gerlachei and C. propinquus underwent diel vertical migrations in both areas whereas C. acutus did not migrate. Species diversity in the epipelagic zone was moderate and the fauna was characterized by species typical of the oceanic east wind drift. Diversity increased with depth and was due primarily to the appearance of circumpolar mesopelagic copepods in Weddell Warm Deep Water. Biomass of 1–20 mm zooplankton in the 0–1000 m zone was low (1.1–1.3 gDWm^-2) compared to other Southern Ocean areas investigated with comparable methods. It is suggested that this is related to Weddell circulation patterns and the resulting low annual primary production in the central Weddell Sea.     

Midwater macroplankton of British Columbia studied by submersible PISCES IV

Data are reported from 30 dives during winter and spring 1980–83at sites in the Strait of Georgia and inlets running off it,and in inlets on the west coast of Vancouver Island. Observationswere made from the surface to the bottom (maximum 733 m) butmost attention was given to the midwater plankton community.The vertical distribution and abundance of hydromedusae, siphonophores,ctenophores, euphausiids, pelagic worms and molluscs were recordedsystematically, along with data for one copepod species (Neocalanusplumchrus). The midwater environment was found to be stablein terms of species composition and depth ranges, which permittedthe data for several years and many locations to be pooled.Four categories of plankton are recognized: (a) epipelagic (concentratedin the top 50 m); (b) mesopelagic (50–175 m); (c) bathypelagic(below 175 m); and (d) meso-bathypelagic (forms living in bothmeso- and bathypelagic zones). Species in this last categorybehave like mesopelagic forms at the upper end of their ranges,migrating to the surface at night. Deeper-lying members of thesame species do not migrate. For six such species, the cut-offpoint between migratory and non-migratory components was foundto lie at a mean depth of 175 m. This depth is therefore takenas the demarcation point between the meso- and bathypelagiczones. Taking account of published data on light penetration,it is estimated that, for the whole region, daytime light intensityat 175 m, and hence the effective limit for phototaxis of thespecies in question, lies in the range 10^–8–10^–9µW cm^–2.     

Recovery of Amphibian and Reptile Assemblages During Old‐Field Succession of Tropical Rain Forests

Conversion of tropical forests to agriculture affects vertebrate assemblages, but we do not know how fast or to what extent these assemblages recover after field abandonment. We addressed this question by examining amphibians and reptiles in secondary forests in southeastern Mexico. We used chronosequence data (12 secondary forests fallow for 1–23 yr and 3 old‐growth forest sites) to analyze successional trajectories and estimate recovery times of assemblage attributes for amphibians and reptiles. We conducted 6 surveys at each site over 14 mo (1200 person‐hours) and recorded 1552 individuals, including 25 species of amphibians and 36 of reptiles, representing 96 and 74 percent of the expected regional number of species, respectively. Abundance, species richness, and species diversity of amphibians increased rapidly with successional age, approaching old‐growth forest values in < 30 yr. Species richness and species diversity of reptiles reached old‐growth forest values in < 20 yr. By contrast, the abundance of reptiles and the assemblage composition of amphibians and reptiles recovered more slowly. Along the chronosequence, we observed more species replacement in reptile assemblages than in amphibian assemblages. Several species in the old‐growth forest were absent from secondary forests. Dispersal limitation and harsh conditions prevailing in open sites and early successional environments appear to preclude colonization by old‐growth forest species. Furthermore, short fallow periods and isolation of forest remnants lead to the formation of new assemblages dominated by species favored by human disturbances.     

Flood‐Pulse Effects on Zooplankton Assemblages in a River‐Floodplain System (Gemenc Floodplain of the Danube,Hungary)

We studied the structure and population dynamics of zooplankton assemblages in the water bodies (eu‐, para‐, plesiopotamal and conjunctive water bodies) of a temperate floodplain during flood events. Here we report differences in the species composition of these water bodies in the two stages of flood pulses: rising vs. receding. During the receding period the proportion of larger and tychoplanktonic species increased. Similarity among zooplankton assemblages of these floodplain water bodies increased during the rising and decreased during the receding period. Species richness, diversity and population density values of zooplankton assemblages increased during the receding period in all types of water bodies except the eupotamal. The guild ratio of rotifer assemblages showed characteristic, but somewhat ambiguous changes. We conclude that the hydrological regime affects the structure and dynamics of zooplankton assemblages on the floodplain. (© 2011 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Biogeography of pelagic bacterioplankton across an antagonistic temperature-salinity gradient in the Red Sea

The Red Sea is a unique marine ecosystem with contrasting gradients of temperature and salinity along its north-to-south axis. It is an extremely oligotrophic environment that is characterized by perpetual year-round water column stratification, high annual solar irradiation, and negligible riverine and precipitation inputs. In this study, we investigated whether the contemporary environmental conditions shape community assemblages by pyrosequencing 16S rRNA genes of bacteria in surface water samples collected from the northeastern half of this water body. A combined total of 1855 operational taxonomic units (OTUs) were recovered from the 'small-cell' and 'large-cell' fractions. Here, a few major OTUs affiliated with Cyanobacteria and Proteobacteria accounted for ～93% of all sequences, whereas a tail of 'rare' OTUs represented most of the diversity. OTUs allied to Surface 1a/b SAR11 clades and Prochlorococcus related to the high-light-adapted (HL2) ecotype were the most widespread and predominant sequence types. Interestingly, the frequency of taxa that are typically found in the upper mesopelagic zone was significantly elevated in the northern transects compared with those in the central, presumably as a direct effect of deep convective mixing in the Gulf of Aqaba and water exchange with the northern Red Sea. Although temperature was the best predictor of species richness across all major lineages, both spatial and environmental distances correlated strongly with phylogenetic distances. Our results suggest that the bacterial diversity of the Red Sea is as high as in other tropical seas and provide evidence for fundamental differences in the biogeography of pelagic communities between the northern and central regions.     

Characterizing termite assemblages in fragmented forests: A test case in the Argentinian Chaco

Abstract Termites are major decomposers in tropical ecosystems. To characterize their assemblages in terms of taxonomical and functional composition, Jones and Eggleton (2000, Journal of Applied Ecology 37, 191–203) recently proposed a standardized sampling protocol based on belt transects of 100 m × 2 m. We evaluated the representativeness of samples obtained by this protocol, and its suitability to calculate diversity statistics, by replicating it in an area of naturally fragmented subtropical forest. We sampled six 100 m transects in separate small forest islets, and one transect extended to 500 m in a large islet, recording presence/absence data (occurrences) of termite species in successive quadrats of 5 m × 2 m. In the large islet, strips of 100 m within the 500 m transect produced extremely variable species richness figures. This variability was primarily due to heterogeneity in the spatial distribution of soil‐dwelling termites. Combining non‐contiguous quadrats allowed us to span a broader diversity of microhabitats for an equal effort, providing less variable results and faster species accumulation. Individual transects of 100 m in small forest islets yielded too few samples to allow reliable estimations of total species richness, although these transects when pooled constituted a useful data set for comparison with other sites. In the focal habitat, a single 100 m transect appeared therefore inadequate to allow a reliable characterization of the termite assemblage, even at the level of a single forest islet. To improve the rate of species accumulation and to obtain diversity statistics allowing intersite comparisons, we suggest the use of smaller, non‐contiguous quadrats, and that sampling be continued until stable diversity estimates are obtained. In the habitat studied, such an alternative protocol could be adequately combined with a standardized protocol for collecting ground‐dwelling ants.     

Variability in the macrozooplankton community off the Antarctic Peninsula

Summary This paper presents an analysis of zooplankton net sampling surveys carried out during four expeditions to the Antarctic Peninsula region. Cluster analysis documented two to three site groupings for the epipelagic zone and one mesopelagic site cluster below 200 to 300 m depth. Analysis of species dominance, constancy, diversity and evenness indices did not allow clear designation and separation of communities in terms of these parameters.Computation of a rank correlation matrix for each season allowed the characterization of species groups. There were no perfect indicator species in the very strict sense. The main differences in the composition of the zooplankton between the site clusters were due mainly to changes in abundance rather than to presence or absence of particular species. However, the interpretation of the complex species and site groupings led to the conclusion that we can define three distinct communities: an oceanic, a neritic, and a mesopelagic community beneath 200 to 300 m. A so-called transitional cluster represents a mixing zone created by frequent occurrence of species from both the oceanic and neritic community. The location of the described oceanic and neritic community sites seem to be relatively stable with minor latitudinal changes during the seasons, while occurrence and abundance of most species changes with the time of the year. The usefulness of particular species (e.g. Euphausia superba) as indicator species also change during the year     

Bacterial diversity and community composition from seasurface to subseafloor

We investigated compositional relationships between bacterial communities in the water column and those in deep-sea sediment at three environmentally distinct Pacific sites (two in the Equatorial Pacific and one in the North Pacific Gyre). Through pyrosequencing of the v4–v6 hypervariable regions of the 16S ribosomal RNA gene, we characterized 450 104 pyrotags representing 29 814 operational taxonomic units (OTUs, 97% similarity). Hierarchical clustering and non-metric multidimensional scaling partition the samples into four broad groups, regardless of geographic location: a photic-zone community, a subphotic community, a shallow sedimentary community and a subseafloor sedimentary community (⩾1.5 meters below seafloor). Abundance-weighted community compositions of water-column samples exhibit a similar trend with depth at all sites, with successive epipelagic, mesopelagic, bathypelagic and abyssopelagic communities. Taxonomic richness is generally highest in the water-column O₂ minimum zone and lowest in the subseafloor sediment. OTUs represented by abundant tags in the subseafloor sediment are often present but represented by few tags in the water column, and represented by moderately abundant tags in the shallow sediment. In contrast, OTUs represented by abundant tags in the water are generally absent from the subseafloor sediment. These results are consistent with (i) dispersal of marine sedimentary bacteria via the ocean, and (ii) selection of the subseafloor sedimentary community from within the community present in shallow sediment.     

Large moths captures by a pest monitoring system depend on farmland heterogeneity

As intensive farmlands cover increasing areas of the world, associated biotic richness is crucial for the biodiversity of entire regions. Using data on non‐target Macrolepidopteran moths captured by a crop pest monitoring system, we compared local (100 m perimeter)‐ and landscape‐scale (1000 m perimeter) predictors of the numbers of moth individuals and moth species richness. During a single year (2009), eighteen light traps captured 91 726 individuals of 564 moths species. Typically for biotically impoverished habitats, the catches were dominated by a few superabundant species. Even in these impoverished assemblages, numbers of species increased with increasing herb and woody plants diversity (100 m around the traps), crop diversity (1000 m perimeter), landscape composition (1000 m) and configuration (100 and 1000 m). Abundance of the catches increased only with woody plants diversity in 100 m perimeters. In separate analyses of two species‐rich families, the presumably less mobile Geometridae increased with landscape configuration (i.e. density of edges) within 100 m perimeters around the traps, whereas the species richness of more mobile Noctuidae also reflected the landscape composition (i.e. proportional representation of land covers) at 100 m perimeters. Proportional representation of pest species decreased with increasing richness of herb and woody plants. Taken together, farmland heterogeneity increases moth species richness, whereas abundance of the catches mainly depends on local factors in the vicinity of light traps, and the local factors are more important for presumably less mobile Geometridae than for more mobile Noctuidae.     

Unexpected biodiversity of ciliates in marine samples from below the photic zone

Marine microbial eukaryotes play critical roles in planktonic food webs and have been described as most diverse in the photic zone where productivity is high. We used high‐throughput sequencing (HTS) to analyse the spatial distribution of planktonic ciliate diversity from shallow waters (<30 m depth) to beyond the continental shelf (>800 m depth) along a 163 km transect off the coast of New England, USA. We focus on ciliates in the subclasses Oligotrichia and Choreotrichia (class Spirotrichea), as these taxa are major components of marine food webs. We did not observe the decrease of diversity below the photic zone expected based on productivity and previous analyses. Instead, we saw an increase of diversity with depth. We also observed that the ciliate communities assessed by HTS cluster by depth layer and degree of water column stratification, suggesting that community assembly is driven by environmental factors. Across our samples, abundant OTUs tend to match previously characterized morphospecies while rare OTUs are more often undescribed, consistent with the idea that species in the rare biosphere remain to be characterized by microscopy. Finally, samples taken below the photic zone also reveal the prevalence of two uncharacterized (i.e. lacking sequenced morphospecies) clades – clusters X₁ and X₂ – that are enriched within the nano‐sized fraction (2–10 μm) and are defined by deletions within the region of the SSU‐rDNA analysed here. Together, these data reinforce that we still have much to learn about microbial diversity in marine ecosystems, especially in deep‐waters that may be a reservoir for rare species and uncharacterized taxa.