Methods for measuring the properties of the turbulence in bubble flow

Summary A constant temperature hot film anemometer has been used to evaluate mean liquid flow velocity, bubble frequency, turbulence scale and intensity, and the rate of energy dissipation by liquid phase bubble flow.Symbols M mass - L lenght - T time - a gas/liquid interfacial area L² - a=a/V_L specific gas/liquid interfacial area with regard to the volume of the liquid L^–1 - d bubble diameter L - d mean bubble diameter L - d_e dynamic equilibrium (maximum stable) bubble size L - d_p primary bubble diameter L - d_s Sauter bubble diameter L - E specific energy dissipation rate with regard to the volume of the liquid ML^–1T^–3 - E V_L energy dissipation rate ML²T^–3 - E=E/ since =1 g cm^–3, E has the same numerical value as E. Therefore, the symbol E is used everywhere in the present paper for E and called energy dissipation rate (S. s^–2=Stokes. s^–2) L²T^–3 - E_G or _G local relative gas hold up L²T^–3 - f() autocorrelation function [Eq. (10)] L²T^–3 - f(r) cross correlation function [Eq. (11)] L²T^–3 - g acceleration of gravity LT^–2 - k constant LT^–2 - k_L mass transfer coefficient LT^–1 - k_La volumetric mass transfer coefficient with regard to the volume of the liquid T^–1 - N₀ number of crossings of u and T^–1 - n_B bubble frequency T^–1 - r distance between two points 1 and 2 of the cross correlation function L - t time T - u momentaneous liquid velocity LT^–1 - mean liquid velocity LT^–1 - mean square fluctuation velocity L²T^–2 - intensity of turbulence LT^–1 - x position coordinate L - V volume of the bubbling layer in the column L³ - V_L volume of the bubble free layer in the column L³ - V electrical voltage (in Fig. 2) L³ - v velocity scale [Eq. (6)] LT^–1 - We_crit critical Weber number [Eq. (4)] LT^–1 - w_SG superficial gas velocity LT^–1 - w_SL superficial liquid velocity LT^–1 - _G or E_G local relative gas hold up LT^–1 - smallest scale [Eq. (6)] L - time delay in the autocorrelation function [Eq. (10)] T - energy dissipation scale [E. (15)] L - _f: Taylor's vorticity scale [E. (14)] L - kinematic viscosity of the liquid L²T^–1 - density of the liquid ML^–3 - surface tension MT^–2 - dynamic pressure of the turbulence [Eq. (8)] ML^–1T^–2 - p primary (at the aerator) - e equilibrium (far from the aerator)     

Effects of pH and light on the membrane conductance measured in the acid and basic zones ofChara

Summary The area-specific coductance of the membrane in the acid and basic zones (denoted byG _A andG _B , respectively) ofChara cells was measured in flowing solutions, containing 5mm zwitterionic buffer, as a function of the external pH(denoted by pH⁰). During illuminationG _A was 1 S/m² for pH⁰ in the range 5 to 8.5, and increased markedly to 3 to 6 S/m² at higher pH₀.G _B , however, was always larger thanG _A during illumination with a typical magnitude of 5 to 15 S/m² for pH⁰ 6 to 12. Thus under many experimental conditions it is possible that there is no single correct value for the membrane area-specific conductance. A flow of current in the external medium between the acid and basic regions was found to be associated with pH banding, and also withG _B exceedingG _A . This current could be present in flowing solutions without added HCO ₃ ^– over a wide range of pH⁰ and at high (25mm) buffer concentration. Combining measurements ofG _A andG _B with measurements of the currents in the acid and basic zones (denoted byJ _A andJ _B , respectively), it was estimated that the resting (i.e. in the absence of net current flow) potential difference (PD) across the membranes within the individual zones (denoted byU _A andU _B ) was –265±20 and –183±5 mV, respectively, during illumination. Upon the removal of illumination at pH⁰-7.5,G _A ,G _B andJ _B were found to decrease rapidly during the initial few hundred seconds. During this period (U _B –V _m ) remained relatively constant. A transient hyperpolarization ofV _m often occurred, the magnitude of which was correlated with the magnitude ofJ _B prior to the removal of illumination. After some 0.5 to 1 ksec of darkness,G _A andG _B had both decreased considerably and nowG _A G _B andU _A U _B V _m . Eventually, after 2 to 8 ksec of darkness, the membrane conductance was effectively homogeneous with a much smaller magnitude (typically<0.2S/m²) andV _m was depolarized by typically 5 to 15 mV.     

Further Analysis of Marek's Disease Virus Horizontal Transmission Confirms That UL44 (gC) and UL13 Protein Kinase Activity Are Essential,while US2 Is Nonessential

Marek''s disease virus (MDV) causes a devastating disease in chickens characterized by the development of lymphoblastoid tumors in multiple organs and is transmitted from the skin of infected chickens. We have previously reported that the U_S2, U_L44 (glycoprotein C [gC]), and U_L13 genes are essential for horizontal transmission of MDV in gain-of-function studies using an a priori spread-deficient virus that was based on an infectious clone from the highly virulent RB-1B virus (pRB-1B). To precisely determine the importance of each individual gene in the process of chicken-to-chicken transmission, we used the transmission-restored clone that readily transmits horizontally and mutated each individual gene in loss-of-function experiments. Two independent U_S2-negative mutants transmitted horizontally, eliminating U_S2 as being essential for the process. In contrast, the absence of gC expression or mutating the invariant lysine essential for U_L13 kinase activity abolished horizontal spread of MDV between chickens.Marek''s disease (MD) is caused by the oncogenic alphaherpesvirus Gallid herpesvirus 2 (GaHV-2), better known as MD virus (MDV). The most prominent sign of MD is the development of lymphoproliferative disease in chickens characterized by solid tumors in the viscera and other organs (3, 19). Natural infection begins through inhalation of virus, after which MDV is taken to the lymphoid organs and primary cytolytic infection in B and then T lymphocytes ensues. Following lytic infection, latency is established mainly in activated CD4⁺ T cells, which may be transformed with differing efficiencies, depending on the genotype of the infected chicken, and result in lymphoma formation. Irrespective of the transformation event, infection of feather follicle epithelial cells in the skin by migrating lymphocytes leads to the production of infectious particles that are shed into the environment, providing a continuous source of infectious virus. While the majority of the work on MDV has been focused on the transformation and reactivation of MDV during infection, little is known about horizontal transmission of virus from one chicken to another.We recently identified genes important for horizontal transmission of MDV. We originally used a transmission-deficient virus derived from a bacterial artificial chromosome (BAC) clone of the very virulent RB-1B strain (pRB-1B-5) (35). Following sequencing of the complete BAC (40), specific genes suspected to be important for transmission were identified. We were able to restore horizontal transmission by repair of specific genes (17). We concluded that a combination of three genes, the unique short (U_S) 2, unique long (U_L) 44 or glycoprotein (g) C, and U_L13 protein kinase genes, was essential for horizontal transmission. Repair of each gene individually did not restore spread, nor did various combinations of two genes. In this report, we further defined which genes are essential by using loss-of-function studies utilizing mutant viruses in which U_S2, U_L13, or gC was inactivated in the transmission-competent virus (17). Mutant viruses were engineered using an infectious clone and markerless Red recombination exactly as previously described (17) using primers shown in Table ​Table1.1. Following confirmation of the correct modifications by restriction fragment length polymorphism (RFLP), PCR, and sequencing analyses, mutant viruses lacking the mini-F BAC sequences after Cre-Lox excision were reconstituted in chicken embryo cell cultures and propagated in chicken kidney cell cultures as previously described (17). Groups of P2a chickens (n = 10), which are highly susceptible to the development of MD (5), were experimentally infected with 1,000 PFU of the mutant viruses intra-abdominally and placed in glove box isolators with 10 age-matched, uninfected contact chickens. All experimental procedures were conducted in compliance with approved Institutional Animal Care and Use Committee (IACUC) protocols (Cornell University protocol numbers 2002-0085 and 2008-0018).

TABLE 1.

Primers used for mutating Marek''s disease virus genes in transmission-competent pRB-1B

Fumonisin and Beauvericin Induce Apoptosis in Turkey Peripheral Blood Lymphocytes

Fumonisins, a family of mycotoxins produced by Fusarium verticillioides (synonym Fusarium moniliforme Sheldon) and F. proliferatum, have been associated with various deleterious effects in different animal species. Serological, hematological and pathological effects and mortality have previously been observed in broiler chicks fed F. proliferatum culture material containing known concentrations of fumonisin, moniliformin and beauvericin. Turkey peripheral blood lymphocytes were exposed in vitro for 72 hours to fumonisin B₁(FB₁), fumonisin B₂(FB₂), hydrolyzed fumonisin B₁ (HFB₁), moniliformin and tricarballylic acid (TCA) (0.01-25 g/ml). A decrease in cell proliferation, as determined by the MTT [3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide] bioassay, occurred in the order: FB₂ > FB₁ > HFB₁, with IC₅₀ = 0.6 M, 1 M and 10 M, respectively. Internucleosomal DNA fragmentation and morphological features characteristic of apoptosis were observed following exposure to fumonisin B₁ and beauvericin; cytoplasmic condensation and membrane blebbing were seen by light microscopy. Tricarballylic acid and moniliformin did not interfere with cell proliferation. Results suggested that fumonisin B₁ and beauvericin may affect immune functions by suppressing proliferation and inducing apoptosis of lymphocytes.     

The Genome Sequence of Herpes Simplex Virus Type 2

The genomic DNA sequence of herpes simplex virus type 2 (HSV-2) strain HG52 was determined as 154,746 bp with a G+C content of 70.4%. A total of 74 genes encoding distinct proteins was identified; three of these were each present in two copies, within major repeat elements of the genome. The HSV-2 gene set corresponds closely with that of HSV-1, and the HSV-2 sequence prompted several local revisions to the published HSV-1 sequence (D. J. McGeoch, M. A. Dalrymple, A. J. Davison, A. Dolan, M. C. Frame, D. McNab, L. J. Perry, J. E. Scott, and P. Taylor, J. Gen. Virol. 69:1531–1574, 1988). No compelling evidence for the existence of any additional protein-coding genes in HSV-2 was identified.The complete 152-kbp genomic DNA sequence of herpes simplex virus type 1 (HSV-1) was published in 1988 (56) and since then has been very widely employed in a great range of research on HSV-1. Additionally, results from this most studied member of the family Herpesviridae have fed powerfully into research on other herpesviruses. In contrast, although a substantial number of individual gene sequences have been determined for the other HSV serotype, HSV-2, the complete genome sequence for this virus has not been available hitherto. In this paper we report the sequence of the genome of HSV-2, strain HG52.At a gross level the 155-kbp genome of HSV-2 is viewed as consisting of two extended regions of unique sequence (U_L and U_S), each of which is bounded by a pair of inverted repeat elements (TR_L-IR_L and IR_S-TR_S) (17, 66) (Fig. ​(Fig.1).1). There is a directly repeated sequence of some 254 bp at the genome termini (the a sequence), with one or more copies in the opposing orientation (the a′ sequence) at the internal joint between IR_L and IR_S (21). U_L plus its flanking repeats is termed the long (L) region, and U_S with its flanking repeats is termed the short (S) region. In individual molecules of HSV-2 DNA, the L and S components may be linked with each in either orientation, so that DNA preparations contain four sequence-orientation isomers, one of which is defined as the prototype (66). The sequences of the terminal and internal copies of R_L and of R_S are considered to be indistinguishable. Open in a separate windowFIG. 1Overall organization of the genome of HSV-2. The linear double-stranded DNA is represented, with the scale at the top. The unique portions of the genome (U_L and U_S) are shown as heavy solid lines, and the major repeat elements (TR_L, IR_L, IR_S, and TR_S) are shown as open boxes. For each pair of repeats the two copies are in opposing orientations. As indicated, TR_L, U_L, and IR_L are regarded as comprising the L region, and IR_S, U_S, and TR_S are regarded as comprising the S region. Plasmid-cloned fragments used for sequence determination are indicated at the bottom: BamHI and HindIII fragments are indicated by B and H, respectively, followed by individual fragment designations in lowercase; KH and HK indicate KpnI/HindIII fragments as described in the text.This paper presents properties of the HSV-2 DNA sequence and our present understanding of its content of protein-coding genes and other elements. We are also interested in comparative analysis of the HSV-1 and HSV-2 genomes to examine processes of molecular evolution which have occurred since the two species diverged, and we intend to pursue this topic in a separate paper.     

Fumonisin production by <Emphasis Type="Italic">Fusarium</Emphasis> species isolated from freshly harvested corn in Iran

Fifty-one strains of Fusarium verticillioides and F. proliferatum isolated from corn collected from four different geographic areas in Iran, namely Fars, Khuzestan, Kermanshah and Mazandaran (an endemic oesophageal cancer (OC) area) were evaluated for their ability to produce fumonisins B₁ (FB₁), B₂ (FB₂) and B₃ (FB₃) in corn culture. Fumonisin levels were determined by high-performance liquid chromatography. All tested strains of F. verticillioides and F. proliferatumproduced fumonisins within a wide range of concentrations, 197–9661 g/g, 18–1974 g/g, and 21–1725 g/g for FB₁, FB₂, and FB₃, respectively. The highest mean concentrations of FB₁, FB₂, and FB₃ were 3897, 806 and 827 g/g, respectively. Overall, 61% of the F. verticillioides and F. proliferatum strains produced higher levels of FB₃ than FB₂. The mean ratios of FB₁:FB₂, FB₁:FB₃ and FB₁:total fumonisins were 8, 7 and 0.7 for F. verticillioides and 5.7, 10.7 and 0.7 for F. proliferatum, respectively. Significant differences in some of the meteorological data (rainfall, relative humidity and minimum temperature) from the four provinces were observed. Fumonisin levels produced by F. verticillioides strains isolated from Khuzestan province (tropical zone) were significantly (P < 0.01) higher than the other three provinces. This is the first report of the fumonisin-producing ability of F.verticillioides and F. proliferatum strains isolated from corn harvested from different geographic areas in Iran.     

Transformation of Salmonella typhimurium TA1538 by optimized electroporation

Summary Standard electroporation of Salmonella typhimurium TA1538 by the plasmid pAMH70 yielded 1.3 × 10² transformants/g of plasmid DNA. Three parameters: resistance (U₁), voltage (U₂) and dose of plasmid DNA (U₃) were optimized with two Doehlert designs. Transformation was increased 75 fold. Optimal values for U₁, U₂ and U₃ were 761.0 , 1.6 kV and 96.1 ng respectively. The most important parameters were U₂ and the couple U₁/U₂.     

Toxicity of the mycotoxins fumonisins B1 and B2 and Alternaria alternata f. sp. lycopersici toxin (AAL) in cultured mammalian cells

Fumonisins B₁ and B₂ and AAL toxin are a series of structurally related mycotoxins. Fumonisins B₁ and B₂, produced by Fusarium moniliforme Sheldon induce toxic hepatitis and hepatomas in rats and leukoencephalomalacia in horses. The cancer-promotion assay which has been used to guide their purification is slow and consumes large amounts of sample. We have examined a series of cultured mammalian cell lines in order to develop a more rapid and sensitive bioassay system, which may be useful for examining structure-activity relationships and the mechanism(s) of action of these toxins. Of 9 rat hepatoma cell lines tested, all except the two most de-differentiated lines were sensitive to the three toxins, with a toxic response visible by 48 h. Approximate IC₅₀ values for the most sensitive hepatoma line, H4TG, were 4, 2 and 10 g/ml for fumonisins B₁, B₂ and AAL toxin, respectively in 100 l cultures. Among 15 cell lines from other sources, only MDCK dog kidney epithelial cells were sensitive (IC₅₀ = 2.5, 2 and 5 g/ml, respectively). Studies in co-cultures of sensitive and insensitive cell lines and in cultures of a sensitive cell line over a range of cell densities indicated that cytotoxicity of fumonisins B₁ and B₂ does not involve metabolite activation to a derivative stable enough to diffuse to adjacent cells.Abbreviations AAL toxin Alternaria alternata f. sp. lycopersici toxin - IC₅₀ concentration giving 50% inhibition of cell proliferation     

The chromosomal location of peroxidase isozymes of the wheat kernel

Summary The analysis of the individual parts of the Triticum aestivum L. kernel yields a total of 11 peroxidase isozymes: m, n, a, c, d₁, d, d₂, e, f, g and h (in order from faster to slower migration). Isozymes a, c and d are found in the endosperm (Ed) and seed coats (C), while m, n, d₁, d₂, e, f, g and h are peculiar to the embryo and scutellum (E + S). The use of the nullitetrasomic and ditellosomic series of Chinese Spring wheat allows peroxidase isozymes to be associated with specific chromosome arms. Isozymes a, c and d (Ed) are associated with chromosome arms 7D^S, 4B^L and 7A^S; whereas isozymes m, d₂, e and f are associated with chromosome arms 3D^S, 3B^L, 3D^L and 3D^L, respecitvely. Thus, the E + S isozymes are associated with homoeology group 3 and the Ed isozymes with homoeology groups 7 (a and d isozymes) or 4 (c isozymes).     

Truncated presequences of mitochondrial F1-ATPase β subunit from Nicotiana plumbaginifolia transport CAT and GUS proteins into mitochondria of transgenic tobacco

The mitochondrial F₁-ATPase subunit (ATPase-) of Nicotiana plumbaginifolia is nucleus-encoded as a precursor containing an NH₂-terminal extension. By sequencing the mature N. tabacum ATPase-, we determined the length of the presequence, viz. 54 residues. To define the essential regions of this presequence, we produced a series of 3 deletions in the sequence coding for the 90 NH₂-terminal residues of ATPase-. The truncated sequences were fused with the chloramphenicol acetyl transferase (cat) and -glucuronidase (gus) genes and introduced into tobacco plants. From the observed distribution of CAT and GUS activity in the plant cells, we conclude that the first 23 amino-acid residues of ATPase- remain capable of specifically targeting reporter proteins into mitochondria. Immunodetection in transgenic plants and in vitro import experiments with various CAT fusion proteins show that the precursors are processed at the expected cleavage site but also at a cryptic site located in the linker region between the presequence and the first methionine of native CAT.