Biological functioning of Brazilian Cerrado soils under different vegetation types

Aims

Over a 2?year period, we compared the soil biological functioning (SBF) of Cerrado physiognomies ranging from grassland-savannic to forest formations, sampling in the middle of the dry and rainy seasons.

Methods

Soil samples were collected at two depths (0 to 5?cm and 5 to 20?cm) under the following physiognomies: Campo Sujo, Cerrado Ralo, Cerrado sensu stricto, Cerrad?o and Mata de Galeria. The SBF was represented by the simultaneous analyses of microbial biomass carbon, soil basal respiration and the activity of enzymes linked to the C, P and S cycles (β-glucosidase, acid phosphatase and arylsulfatase, respectively).

Results

The results demonstrated that Cerrado physiognomies are a major determinant of SBF patterns. The forest-like physiognomies (Mata de Galeria and Cerrad?o) presented the highest biomass and activity compared to the grassland (Campo Sujo) and savanna physiognomies (Cerrado Ralo and Cerrado sensu stricto). These differences were more evident in the topsoil layer (0 to 5?cm), and the seasonal effect on the SBF of the Mata de Galeria and Cerrad?o was more pronounced than on the other physiognomies.

Conclusions

These results provide a benchmark for evaluating changes in SBF and related processes in Cerrado areas due to shifts toward agriculture and cattle production.     

Evaluation of three methods for sampling ground-dwelling Ants in the Brazilian Cerrado

Few studies have evaluated the efficiency of methods for sampling ants, especially in regions with highly variable vegetation physiognomies such as the Cerrado region of central Brazil. Here we compared three methods to collect ground-dwelling ants: pitfall traps, sardine baits, and the Winkler litter extractor. Our aim was to determine which method would be most appropriate to characterize the ant assemblages inhabiting different vegetation types. More species were collected with pitfall traps and with the Winkler extractor than with sardine baits. Pitfall traps collected more species in the cerrado (savanna) physiognomies, particularly in those with a poor litter cover, whereas the Winlker extractor was more efficient in the forest physiognomies, except the one subject to periodic inundations. There was a low similarity in species composition between forest and cerrado physiognomies, and this pattern was detected regardless of the method used to sampling ants. Therefore, even the use of a single, relatively selective method of collection can be enough for studies comparing highly distinct habitats and/or conditions. However, if the purpose of the sampling is to produce a more thoroughly inventory of the ant fauna, we suggest the use of a combination of methods, particularly pitfall traps and the Winkler extractor. Therefore, the Ants of the Leaf-Litter (ALL) Sampling Protocol appear to be an adequate protocol for sampling ants in the highly-threatened Brazilian cerrado biome.     

Comparative metagenomic,phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients

Terrestrial ecosystems are receiving elevated inputs of nitrogen (N) from anthropogenic sources and understanding how these increases in N availability affect soil microbial communities is critical for predicting the associated effects on belowground ecosystems. We used a suite of approaches to analyze the structure and functional characteristics of soil microbial communities from replicated plots in two long-term N fertilization experiments located in contrasting systems. Pyrosequencing-based analyses of 16S rRNA genes revealed no significant effects of N fertilization on bacterial diversity, but significant effects on community composition at both sites; copiotrophic taxa (including members of the Proteobacteria and Bacteroidetes phyla) typically increased in relative abundance in the high N plots, with oligotrophic taxa (mainly Acidobacteria) exhibiting the opposite pattern. Consistent with the phylogenetic shifts under N fertilization, shotgun metagenomic sequencing revealed increases in the relative abundances of genes associated with DNA/RNA replication, electron transport and protein metabolism, increases that could be resolved even with the shallow shotgun metagenomic sequencing conducted here (average of 75 000 reads per sample). We also observed shifts in the catabolic capabilities of the communities across the N gradients that were significantly correlated with the phylogenetic and metagenomic responses, indicating possible linkages between the structure and functioning of soil microbial communities. Overall, our results suggest that N fertilization may, directly or indirectly, induce a shift in the predominant microbial life-history strategies, favoring a more active, copiotrophic microbial community, a pattern that parallels the often observed replacement of K-selected with r-selected plant species with elevated N.     

Changes in Diversity, Abundance, and Structure of Soil Bacterial Communities in Brazilian Savanna Under Different Land Use Systems

The Brazilian Savanna, also known as “Cerrado”, is the richest and most diverse savanna in the world and has been ranked as one of the main hotspots of biodiversity. The Cerrado is a representative biome in Central Brazil and the second largest biome in species diversity of South America. Nevertheless, large areas of native vegetation have been converted to agricultural land including grain production, livestock, and forestry. In this view, understanding how land use affects microbial communities is fundamental for the sustainable management of agricultural ecosystems. The aim of this work was to analyze and compare the soil bacterial communities from the Brazilian Cerrado associated with different land use systems using high throughput pyrosequencing of 16S rRNA genes. Relevant differences were observed in the abundance and structure of bacterial communities in soils under different land use systems. On the other hand, the diversity of bacterial communities was not relevantly changed among the sites studied. Land use systems had also an important impact on specific bacterial groups in soil, which might change the soil function and the ecological processes. Acidobacteria, Proteobacteria, and Actinobacteria were the most abundant groups in the Brazilian Cerrado. These findings suggest that more important than analyzing the general diversity is to analyze the composition of the communities. Since soil type was the same among the sites, we might assume that land use was the main factor defining the abundance and structure of bacterial communities.     

Diversity of Archaea in Brazilian savanna soils

Although the richness of Bacteria and Fungi in Cerrado’ soils has been reported, here we report, for the first time, the archaeal community in Cerrado’s soils. DNA extracted from soil of two distinct vegetation types, a dense subtype of sensu strict (cerrado denso) and riverbank forest (mata de galeria), was used to amplify Archaea-specific 16S rRNA gene. All of the fragments sequenced were classified as Archaea into the phylum Thaumarchaeota, predominantly affiliated to groups I.1b and I.1c. Sequences affiliated to the group I.1a were found only in the soil from riverbank forest. Soils from ‘cerrado denso’ had greater Archaea richness than those from ‘mata de galeria’ based on the richness indexes and on the rarefaction curve. β-Diversity analysis showed significant differences between the sequences from the two soil areas studied because of their different thaumarchaeal group composition. These results provide information about the third domain of life from Cerrado soils.     

Effect of rain on trap building by Myrmeleon brasiliensis in a riparian woodland from the Cerrado biome in Brazil

In areas of the Cerrado biome (Brazilian savanna) with well‐defined rainy and dry seasons, changes in climate and landscape affect the abundance and seasonality of insects. Larvae of the antlion Myrmeleon brasiliensis (Návas) (Neuroptera: Myrmeleontidae) are predators that build traps in dry sandy soil to capture prey. Here we determined the effect of rain on trap building by M. brasiliensis larvae in a riparian forest in the Cerrado biome. Differences in population size and developmental stage were found between the rainy and dry seasons. In the laboratory, the effect of rain‐soaked soil on trap building was evaluated. Fewer antlion larvae were found in the rainy season. Moreover, a greater abundance of larvae in the final stage of development (third instar) was found in the dry season, whereas more first instars were found in the rainy season. The latter revealed that wet soil affects the trap building of the larvae, as smaller traps were built in the treatment with soaked soil (simulated rain), whereas the larvae in the control treatment (no rain) continued building traps with no change in size. The findings indicate that seasonality in the Cerrado biome exerts a short‐term influence on M. brasiliensis larvae (larvae build fewer traps) as well as a long‐term influence (association with life cycle).     

Open vegetation formations (grasslands and savannahs) support a higher diversity of Cetoniidae (Insecta: Coleoptera) than forest formations in the brazilian Cerrado

Brazil has 22 genera and 75 species of Cetoniidae, with the Cerrado hosting the greatest diversity among Brazilian biomes. However, the diversity of groups among the different phytophysiognomies of the biome is not known. The objectives of this study are to assess Cetoniidae diversity and to verify the seasonality of these beetles in three Cerrado phytophysiognomies (gallery forest, cerrado sensu stricto, and campo sujo) located in three conservation units in Brasilia, Distrito Federal, Brazil. We collected adults monthly (October/2016 to September/2018) using 180 traps baited with bananas fermented with sugarcane juice, totaling 1,574 specimens, 8 genera, and 17 species. Cetoniidae diversity was higher in the phytophysiognomies with lower tree density (campo sujo and cerrado sensu stricto) than in gallery forests (forest formation), confirming our hypothesis that more open areas favor the dispersal of these insects due to their diurnal long-flying behavior. The seasonality of Cetoniidae was directly related to the precipitation, with higher numbers of individuals and species in the rainy season. However, the distribution varies among the phytophysiognomies, with aggregated distribution in campo sujo and gallery forest and dispersed in cerrado sensu stricto. Our results suggest that the Cetoniidae take advantage of the open Cerrado physiognomies to locate resources faster and with less energy expenditure, presenting higher diversity in these environments, despite the more ephemeral and dispersed food resources.

     

The influence of soil on vegetation structure and plant diversity in different tropical savannic and forest habitats

Aims Soil plays an important role in the formation and heterogeneity of habitats and thus can cause changes in vegetation structure and plant diversity. The differentiation between Cerrado/savanna and forest is well known, but the relationship between soil and habitats from savannic or forest formations still needs to be better understood, particularly in tropical ecotonal areas. We studied the association between attributes of plant communities, namely structure and diversity, and physicochemical characteristics of soils in the Caatinga domain at the transition to Cerrado in Brazil.Methods Chemical and physical analyses of soils were performed in samples of 38 plots from savannic formations and 30 plots from forest formations. Vegetation was characterized floristically and structurally in all plots, five habitats being assessed in each plant formation. Soil features and vegetation parameters were highly distinct among the different habitats.Important findings In general, forest habitats were more nutrient rich than savannic formation. Furthermore, soil variables showed effects both on vegetation structure and on its species diversity, more pronouncedly in the savannic formations. Habitats were structurally distinct, and diversity differed between savannic and forest communities; however, a higher differentiation occurred when the savannic formation habitats were compared among them. Although plant diversity did not differ among forest formation habitats, soil attributes showed a close relationship with edaphic factors and can contribute for similar vegetation. The soil–vegetation relationship in highly diverse ecotonal landscapes is important from the conservation biology point of view and aid in the execution of proactive plans for the maintenance of biodiversity. Thus, we noticed that diversity and soil behaves distinctly between savannic and forest communities.     

Soil-vegetation relationships in hyperseasonal cerrado, seasonal cerrado, and wet grassland in Emas National Park (central Brazil)

In South America, the largest savanna region is the Brazilian cerrado, in which there are few areas that become waterlogged in the rainy season. However, we found a small cerrado area in which the soil is poorly drained and becomes waterlogged at the end of the rainy season, allowing the appearance of a hyperseasonal cerrado. We investigated the soil–vegetation relationships in three vegetation forms: hyperseasonal cerrado, seasonal cerrado, and wet grassland. We collected vegetation and soil samples in these three vegetation forms and submitted obtained data to a canonical correspondence analysis. Our results showed a distinction among hyperseasonal cerrado, seasonal cerrado and wet grassland, which presented different floristic compositions and species abundances. The edaphic variables best related to the hyperseasonal and seasonal cerrados were sand, base saturation, pH, and magnesium. The wet grassland was related to higher concentrations of clay, organic matter, aluminium saturation, aluminium, phosphorus, and potassium. Although it is not possible to infer causal relationships based on our results, we hypothesize that the duration of waterlogging in the hyperseasonal cerrado may not be long enough to alter most of its soil characteristics, such as organic matter, phosphorus, and potassium, but may be long enough to alter some, such as pH and base saturation, as the soils under both cerrados were more similar to one another than to the soil under the wet grassland. Since waterlogging may alter soil characteristics and since these characteristics were enough to explain the plant community variation, we may conclude that water excess—permanent or seasonal—is one of the main factors to distinguish the three vegetation forms, which presented different floristic compositions and species abundances.     

Observations on the vegetation of northeastern Mato Grosso II. Forests and soils of the Rio Suiá--Missu area.

The vegetation of the well drained soils along the Suiá--Missu road in the Serra do Roncador region of NE Mato Grosso is Evergreen Seasonal forest of Amazonian type. The area lies close to the meeting place of the Amazonian forest (the hylaea) and the cerrado (savanna) formation of Central Brazil. The structure of the forest is simple: the canopy is at about 18--23 m, and is exceeded by a few scattered emergents; no recognizable strata can be distinguished among the understorey trees and the shrub and herb layers are sparse. Table 1 lists the most important species and gives information on stratification and general distribution. Most of the species appear to have a hylaean centre of distribution but extend into other vegetation types. The forest differs from related communities which lie closer to the cerrado/forest boundary in its greater height and luxuriance, the presence of additional tall tree species, and the great reduction in abundance of a cerrado floristic element. A survey on the Xavantina--S?o Felix road allowed us to extend previous observations on the distance to which the cerrado tree Pterodon pubescens extends into the forest. The results obtained indicate a considerable extension of forest into cerrado during the life of an individual tree. A characteristic low forest occurs in the flood plain of the Rio Suiá--Missu while Swampy Gallery forests occur on permanently waterlogged soils around the headwaters of streams. The well drained soils of the Suiá--Missu forest are very uniform, deep latosols (oxisols) of very dystrophic nature with pH (in water) between 4.0 and 5.0 (see table 2, p. 203).     

Water availability determines physiognomic gradient in an area of low-fertility soils under Cerrado vegetation

Soil is one of the environmental elements to influence Cerrado vegetation. Aluminum toxicity of Cerrado soils is well known, but the importance of water availability is still to be understood, especially in Cerrado under wetter climates. We studied the association between Cerrado physiognomies (cerrado sensu stricto and cerradão) and morphological, chemical, physical, and physical–hydrical soil attributes at southwestern São Paulo State, Brazil. Characterization of soil morphology, classification and sample collection for particle-size distribution, and chemical and water-retention analyses were carried out in 15 permanent plots, where vegetation was characterized floristically and structurally. Simple correlation and canonical correspondence analyses were performed with soil data. Classification of soils (U.S. Soil Taxonomy) with very low clay contents was not able to separate soils under cerradão—forestry physiognomy—from those under cerrado sensu stricto—savannic physiognomy, even though it tends to distinguish soils under greater biomass from those under lower biomass physiognomies. High soil acidity of all studied soils and increased at the sites with greater contents of organic matter, mainly with the cerradão physiognomy, precluded Al toxicity as a cause of the physiognomic gradient within Cerrado. Clay content, microporosity, and residual and saturation moisture were the most significant soil attributes to correlate directly with the cerradão physiognomy, indicating that water availability is the main factor explaining the physiognomic gradient of Cerrado vegetation in a local scale, where climate and soil fertility do not vary spatially.     

Wastewater Irrigation Increases the Abundance of Potentially Harmful Gammaproteobacteria in Soils in Mezquital Valley,Mexico

Wastewater contains large amounts of pharmaceuticals, pathogens, and antimicrobial resistance determinants. Only a little is known about the dissemination of resistance determinants and changes in soil microbial communities affected by wastewater irrigation. Community DNAs from Mezquital Valley soils under irrigation with untreated wastewater for 0 to 100 years were analyzed by quantitative real-time PCR for the presence of sul genes, encoding resistance to sulfonamides. Amplicon sequencing of bacterial 16S rRNA genes from community DNAs from soils irrigated for 0, 8, 10, 85, and 100 years was performed and revealed a 14% increase of the relative abundance of Proteobacteria in rainy season soils and a 26.7% increase in dry season soils for soils irrigated for 100 years with wastewater. In particular, Gammaproteobacteria, including potential pathogens, such as Pseudomonas, Stenotrophomonas, and Acinetobacter spp., were found in wastewater-irrigated fields. 16S rRNA gene sequencing of 96 isolates from soils irrigated with wastewater for 100 years (48 from dry and 48 from rainy season soils) revealed that 46% were affiliated with the Gammaproteobacteria (mainly potentially pathogenic Stenotrophomonas strains) and 50% with the Bacilli, whereas all 96 isolates from rain-fed soils (48 from dry and 48 from rainy season soils) were affiliated with the Bacilli. Up to six types of antibiotic resistance were found in isolates from wastewater-irrigated soils; sulfamethoxazole resistance was the most abundant (33.3% of the isolates), followed by oxacillin resistance (21.9% of the isolates). In summary, we detected an increase of potentially harmful bacteria and a larger incidence of resistance determinants in wastewater-irrigated soils, which might result in health risks for farm workers and consumers of wastewater-irrigated crops.     

Taxonomic distinctness and diversity of a hyperseasonal savanna in central Brazil

Savannas are characterized by a sharp seasonality, in which the water shortage defines the community functioning. Hyperseasonal savannas, however, experience additionally waterlogging in the rainy season. Since waterlogging may cause local extinctions of intolerant species, we asked whether waterlogging constricts the phylogenetic structure of a hyperseasonal savanna. We studied a hyperseasonal cerrado, comparing it with a nearby seasonal cerrado, never waterlogged, in Emas National Park, central Brazil. In each vegetation form, we sampled all vascular plants by placing fifty 1-m² quadrats in five surveys. We compared the phylogenetic structure of both vegetation forms, calculating their taxonomic distinctness, taxonomic diversity, expected taxonomic distinctness, and species, genus, and family similarities. The taxonomic distinctness of both cerrados was similar and the values of similarities were high, but taxonomic diversity and expected taxonomic distinctness were lower in the hyperseasonal cerrado than in the seasonal one. Assuming that phenotypic attraction is the major process organizing local communities, the waterlogging in hyperseasonal cerrado assembles phylogenetically unrelated species that have converged on similar habitat use. As a consequence, the habitat use of hyperseasonal cerrado species is a trait widespread in the phylogeny of seasonal cerrado. Waterlogging constrains the phylogenetic structure of the hyperseasonal cerrado, especially by reducing species diversity. In more ecological terms, we can only fully assess the phylogenetic structure of a community if we consider the species abundance.     

Changes in arbuscular mycorrhizal fungal communities along a river delta island in northeastern Brazil

Arbuscular mycorrhizal fungi (AMF) play a key role in the maintenance of the balance of terrestrial ecosystems, but little is known about the biogeography of these fungi, especially on tropical islands. This study aims to compare AMF community structure along a transect crossing a fluvial-marine island and relate these communities with soil and vegetation parameters to shed light on the forces driving AMF community structure on a local scale. We tested the hypothesis that the composition of AMF communities changes across the island, even within short distances among sites, in response to differences in edaphic characteristics and vegetation physiognomies. We sampled roots and soils in five different natural and degraded habitats: preserved mangrove forest (MF), degraded mangrove forest (MD), natural Restinga forest (RF), and two regeneration Restinga forests (RR1 and RR2) on Ilha da Restinga, northeastern Brazil. We determined the mycorrhizal colonization rate and AMF community structure based on morphological spore identification. The island soils were sandy with pH varying from acid to neutral; higher levels of organic matter were registered in RF and lower in MF; other chemical and physical soil attributes differed along the habitat types on the island. In total, 22 AMF species were identified, without any difference in species richness. However, the diversity and composition of AMF communities, spore abundance per families, and mycorrhizal colonization were statistically different among the habitats. The composition of AMF communities was strongly related to soil characteristics, especially the sum of exchangeable bases. Our results indicate that the different habitat types have diverse AMF communities even within short distances among habitats. In conclusion, islands with high spatial heterogeneity in soil parameters and diverse vegetation are potential refuges for the diversity conservation of AM fungi.     

Tailoring restoration interventions to the grassland‐savanna‐forest complex in central Brazil

Defining the reference system for restoration projects in regions characterized by complex vegetation mosaics is challenging. Here we use the Cerrado region of Brazil as an example of the importance of clearly defining multiple natural and anthropogenically altered states in grassland‐savanna‐forest mosaics. We define three main, natural vegetation types–grassland, savanna, and scleromorphic (cerradão) forest–to (1) distinguish between original and degraded states and (2) set appropriate targets for and guide restoration. We contend that the differences in Cerrado vegetation composition originally were driven by soil conditions and secondarily by fire frequency and precipitation patterns that differ from the core to the edge of the Cerrado region. Grasslands are found on the shallowest, least fertile soils and/or in waterlogged soils; scleromorphic forests are generally located on deeper, more fertile soils; and savannas occupy an intermediate position. In recent decades, this biophysical template has been overlain by a range of human land‐use intensities that strongly affect resilience, resulting in alternative anthropogenic states. For example, areas that were originally scleromorphic forest are likely to regenerate naturally following low‐ or medium‐intensity land use due to extensive resprouting of woody plants, whereas grassland restoration requires reintroduction of grass and forb species that do not tolerate soil disturbance and exotic grass competition. Planting trees into historic grasslands results in inappropriate restoration targets and often restoration failure. Correctly identifying original vegetation types is critical to most effectively allocate scarce restoration funding.     

Linking the spatiotemporal variation of litterfall to standing vegetation biomass in Brazilian savannas

全球尺度上的凋落物受气候,土壤特征和植被结构的影响,随着植被现存生物量的增加,从草地到森林的凋落物产量增加。然而,在景观尺度上,凋落物的产量与植被结构之间的相同关系却很少被研究,相邻的结构不同的群落之间凋落物格局的比较研究也比较缺乏。本研究使用一种标准化的方法来描述四种稀树草原地貌之间的结构差异,并分析了在巴西塞拉多保护区(Cerrado)中地貌与凋落物变化的 关系。我们评估了平均分布在4个地貌的48个地点的木本植被结构和组成,并从2014年4月到2015年3月每月监测凋落物产量。研究结果 表明,不同地貌的木本植被密度、断面积、柱状体积和地上生物量各不相同。地上生物量与年凋落物产量之间存在着很强的正相关关系,凋落物产量随植被结构的增加从0.9增加到8.4 Mg ha⁻¹。不同植被类型间的月产量具有季节性和相似性,旱季产量增加。叶组成显性部分 (约85%)和凋落物的季节性主要是由于干旱月份落叶集中所致。然而,可能是随着植物群落中落叶物种丰度的减少,全年凋落物的时间格局显示出从开放植被类型到封闭植被类型的季节性逐渐减少。我们的研究结果表明,植被结构的变化可能会影响不同地貌凋落物的空间和时间分布格局,这些格局在整个塞拉多保护区景观中同时发生,可能对该生态系统的整体功能产生影响。此外,这些发现强调了使用标准化方法是正确比较不同环境中凋落物格局的必要条件。     

Regeneration patterns of <Emphasis Type="Italic">Polylepis subtusalbida</Emphasis> growing with the exotic trees <Emphasis Type="Italic">Pinus radiata</Emphasis> and <Emphasis Type="Italic">Eucalyptus globulus</Emphasis> at Parque Nacional Tunari,Bolivia

Dry semideciduous and deciduous forests occur only on calcium-rich soils and occupy almost 20% of the 200 million ha of the cerrado region of central Brazil. Other savanna physiognomies of woodlands and grasslands, and gallery forests generally occur on acid soils with low calcium levels. The literature on phytosociological aspects of such cerrado physiognomies is quite abundant whereas there is very little information on deciduous forests. Also lacking is information on soil fertility and its influence on species distribution. The objective of the present study was to study the distribution of native species within a dry deciduous forest in the Araguari river valley, Uberlândia, Minas Gerais as related to soil properties. A 1-ha sampling area, with no apparent difference in physiognomy, was divided into fifty 10 m × 20 m plots arrayed in 10 × 5 grid and all trees with a minimum circumference of 15 cm at 1.30 m height were surveyed. A composite soil sample was collected from 0 to 10 cm depth in each plot and soil pH, organic C and nutrient availability were determined. Cluster analysis based on soil chemical properties showed the existence of two distinct groups of plots. Further field examinations revealed that the forest was situated in an area of transition between mica schist and basalt parent materials, without any apparent difference in the forest physiognomy. The basalt-derived soil in 23 plots had significantly higher availability of Ca (47.0 cmol(+) kg^?1 soil), Mg (2.59), and K (0.96) than the mica schist derived soil (Ca—18.4, Mg—1.29, and K—0.66) in the remaining 27 plots, though both soils would be classified as eutrophic. A total of 59 species belonging to 27 families were encountered in the area as a whole, of which 36 were common to both soils. In total, 16 species occurred exclusively on the mica schist soil and 7 on the basaltic soil. Myracrodruon urundeuva Allem. (Anacardiaceae) and Tabebuia roseo-alba (Ridl.) Sandwith (Bignoniaceae) were species with high importance values in the forest as a whole. Though there was no significant difference in the diversity index between the two soils, the importance values of these species was larger in the basalt-derived soil with higher nutrient availability.     

Effects of abandoned Eucalyptus plantations on lizard communities in the Brazilian Cerrado

The rapid expansion of human altered landscapes affects biodiversity on every continent. A fundamental goal of conservation biologists is to understand why certain species are at risk of extinction while others are able to persist in human altered landscapes. Afforestation, the conversion of unforested lands to planted forest, is rapidly altering many natural landscapes worldwide. In the Cerrado (Brazilian savanna), a global biodiversity hotspot, a shortage of government incentives has the landscape riddled with abandoned plantation forests that are not subject to active restoration projects. Studies investigating the impacts of abandoned plantations on biodiversity are strikingly limited. We examine the effects of abandoned Eucalyptus plantations on the structure of Cerrado lizard communities. We assessed changes in lizard capture, richness and equitability along cerrado sensu stricto—Eucalyptus transects. Our results indicate abandoned Eucalyptus plantations have subsets of Cerrado species persisting with a great loss of endemic species. The cerrado sensu stricto—Eucalyptus linear transect analysis demonstrated distance from native habitat is positively correlated with loss of biodiversity. We performed correspondence analyses to summarize the variation in species captures across different sites, habitats and pitfall array positions. These analyses depicted strong species associations between habitats and their pitfall array positions. This study is the first to show the negative impacts of abandoned Eucalyptus plantations on Cerrado lizard communities, serving as a cautionary tale of Cerrado biodiversity non-resilience in abandoned Eucalyptus plantations. Mitigation requires that abandoned Eucalyptus plantations are made more suitable to Cerrado lizards by implementing targeted habitat heterogeneity restoration.     

Laccase Gene Composition and Relative Abundance in Oak Forest Soil is not Affected by Short-Term Nitrogen Fertilization

Anthropogenic nitrogen (N) deposition affects a wide range of soil processes including phenol oxidase (PO) activity and soil organic matter dynamics. Depression of phenol oxidase activity in response to N saturation is believed to be mediated by the activity of white-rot basidiomycetes, whose production of extracellular oxidative enzymes can be limited by high N availability. We examined the effect of short-term N deposition on basidiomycete laccase gene diversity and relative abundance in temperate oak forest soil in which significant decreases in phenol oxidase and increased SOM have been recorded in response to experimental N deposition. UniFrac was used to compare the composition of laccase genes between three control- and three nitrogen-fertilized (80 kg⁻¹ ha⁻¹ per year) oak forest soils. The relative abundance of laccase genes was determined from qPCR analysis of laccase and basidiomycete ITS gene abundances. Our results indicate that there was no significant shift in the composition of laccase genes between control- and N-fertilized soils, nor was there a significant change in the relative abundance of laccase genes. These data suggest that N deposition effects on mineral soil PO activity do not result from changes in laccase gene diversity of white-rot basidiomycetes but are likely the result of altered microbial abundance or expression in this ecosystem type. Furthermore, laccase gene composition may be tied to factors that structure microbial communities in general, as soil laccase gene communities are more similar to other forest soils than with the corresponding litter.     

Intensive allochthonous inputs along the Ganges River and their effect on microbial community composition and dynamics

Little is known about microbial communities in the Ganges River, India and how they respond to intensive anthropogenic inputs. Here we applied shotgun metagenomics sequencing to study microbial community dynamics and function in planktonic samples collected along an approximately 700 km river transect, including urban cities and rural settings in upstream waters, before and after the monsoon rainy season. Our results showed that 11%–32% of the microbes represented terrestrial, sewage and human inputs (allochthonous). Sewage inputs significantly contributed to the higher abundance, by 13-fold of human gut microbiome (HG) associated sequences and 2-fold of antibiotic resistance genes (ARGs) in the Ganges relative to other riverine ecosystems in Europe, North and South America. Metagenome-assembled genome sequences (MAGs) representing allochthonous populations were detectable and tractable across the river after 1–2 days of (downstream) transport (> 200 km apart). Only approximately 8% of these MAGs were abundant in U.S. freshwater ecosystems, revealing distinct biodiversity for the Ganges. Microbial communities in the rainy season exhibited increased alpha-diversity and spatial heterogeneity and showed significantly weaker distance-decay patterns compared with the dry season. These results advance our understanding of the Ganges microbial communities and how they respond to anthropogenic pollution.