Climate Analysis of Endemic Species-A Novel Method for Quantitative Analysis of Global Climate Change Since Tertiary

There are many extant endemic plants in China, which were widely distributed in the North Hemisphere during Tertiary. The global cooling during the Tertiary caused a series of narrow distribution regions of the plants. Quaternary glaciation invaded most regions of North America and Eurasia where severe destruction was imposed onto vegetation. However, such destruction was lessened in China largely because of specific topographic and geographical and obviously, a number of other conditions accounted for an unusual refugee camp for the relics of plants in China, among which lots of endemic taxa exist. Recently, Chinese endemic species, such as Metaseqouia, Eucommia , have been employed to conduct multi-disciplinary comprehensive studies so as to analyze Tertiary climate changes quantitatively. Meanwhile, a rigorous method, i.e. climate analysis of endemic species (CAES) has come to maturation. This method is characteristic of some generality because it is supposed to be applicable to the endemic species in other regions of the world. CAES is involved in the following aspects: 1. Conduct multidisciplinary studies on living and fossil species of endemic plants and trace their evolutionary courses. 2. Compare fossil species with living one and clarify which is the nearest living relative (NLR) to fossil counterpart. 3. Fossils and their living counterparts (NLR) are supposed to have similar ecological requirements to meet their life cycles. 4. Investigate the geographic distribution of living and fossil plants within the same taxa and ascertain the dynamic changes of their distributions in geological age. 5. Analyze climate factors in the distribution of specific endemic taxa and obtain the data of climatic characters which are suitable for reconstruction of paleoclimate where fossil counterparts lived. 6. Further study the physio-ecology of living species and determinate paleoclimate where fossil counterparts lived. 7. Integrate analysis of the data from steps 4, 5 and 6, and quantitatively reconstruct the climate where fossil and living plants survive.     

定量分析第三纪以来环境变化的新方法——特有种气候分析法

There are many extant endemic plants in China, which were widelydistributed in the North Hemisphere during Tertiary. The global cooling during the Tertiary caused a series of narrow distribution regions of the plants. Quaternary glaciation invaded most regions of North America and Eurasia where severe destruction was imposed onto vegetation. However, such destruction was lessened in China largely because of specific topographic and geographical and obviously, a number of other conditions accounted for an unusual refugee camp for the relics of plants in China, among which lots of endemic taxa exist. Recently, Chinese endemic species, such as Metaseqouia, Eucommia, have been employed to conduct multi-disciplinary comprehensive studies so as to analyze Tertiary climate changes quantitatively. Meanwhile, a rigorous method, i.e. climate analysis of endemic species (CAES) has come to maturation. This method is characteristic of some generality because it is supposed to be applicable to the endemic species in other regions of the world. CAES is involved in the following aspects: 1. Conduct multidisciplinary studies on living and fossil species of endemic plants and trace their evolutionary courses. 2. Compare fossil species with living one and clarify which is the nearest living relative (NLR) to fossil counterpart. 3. Fossils and their living counterparts (NLR) are supposed to have similar ecological requirements to meet their life cycles. 4. Investigate the geographic distribution of living and fossil plants within the same taxa and ascertain the dynamic changes of their distributions in geological age. 5. Analyze climate factors in the distribution of specific endemic taxa and obtain the data of climatic characters which are suitable for reconstruction of paleoclimate where fossil counterparts lived. 6. Further study the physio-ecology of living species and determinate paleoclimate where fossil counterparts lived. 7. Integrate analysis of the data from steps 4, 5 and 6, and quantitatively reconstruct the climate where fossil and living plants survive.     

定量分析第三纪以来环境变化的新方法：—特有种气候分析法

1　全球气候变化研究新动向自 2 0世纪 80年代以来 ,全球气候变化研究至今仍方兴未艾。全球气温波动、大气中温室气体丰度变化、气候格局改变、气候带迁移和降水量增减 ,都影响到社会经济的发展和人类生活质量的提高。各国政府对全球气候变化的研究 ,如气候演变的过程、短期和长期气候变化的预测和自然灾害的防治都给予极大关注和财力支持[1] 。目前全球气候变化的研究正向两个方向发展。1.1　加大全球气候变化研究时间尺度 ,从研究当今气候发展到研究地质历史时期气候变化全球气候变化 ,如大气中ＣＯ2 浓度的变化、温度的升降和降水量的变…     

Evolution of Hypervariable Regions, V4 and V7, of Insect 18S rRNA and Their Phylogenetic Implications

We compared primary and secondary structures of V4 (helices E23-2 to E23-5) and V7 (helix 43) regions of 18S rRNAs in insects and the other three major arthropod groups (crustaceans, myriapods, and chelicerates) known so far. We found that the lengths of primary sequences and the shapes of secondary structures of these two hypervariable regions of insect 18S rRNA even at infraclass levels are phylogenetically informative and reflect major steps in insect evolution. The long sequence insertion and bifurcated shape of helices E23-2 to E23-5 in the V4 region are unique synapomorphic characters for winged insects (Pterygota). The long sequence insertion and expanded stem length of helix 43 in the V7 region are synapomorphic characters for holometabolous insects which conduct complete metamorphosis. The strongly conserved secondary structures suggest the possibility that these hypervariable regions may be related with certain important cellular functions unknown thus far. The comparison with insect fossil records revealed that the pterygote synapomorphy (V4) and the holometabolous synapomorphy (V7) were established prior to the acquisition of insect wings (flight system) and prior to the development of complete metamorphosis, respectively. These synapomorphies have been also relatively stable over at least 300 Myr and 280 Myr, respectively as well. It implies that the expansion events of the V4 and V7 regions have not occurred simultaneously but independently at different periods during the insect evolution. Then this suggests that V4 and V7 regions are not functionally correlated as recently suggested by Crease and Coulbourn.     

Additional specimens of Diceros (Perissodactyla,Rhinocerotidae) from the Upper Miocene Nakali Formation in Nakali,central Kenya

An upper incisor and upper and lower cheek teeth of Rhinocerotidae from the Upper Miocene of Nakali in central Kenya are described. Those specimens are identified as Diceros sp. The present study confirms the presence of Diceros in sub-Saharan East Africa during Vallesian as noted by several studies. The present result and the fossil records of Diceros in Africa and Eurasia suggest that Diceros might have migrated to Eurasia from Africa by Vallesian, although more fossil records and detailed phylogenetic analysis of Diceros are needed to discuss this hypothesis.     

Interactions within and between clades shaped the diversification of terrestrial carnivores

A longstanding debate in evolutionary biology and paleontology is whether ecological interactions such as competition impose diversity dependence on speciation and extinction rates. Here, we analyze the fossil record of terrestrial mammalian carnivores in North America and Eurasia using a Bayesian framework to assess whether their diversity dynamics were affected by diversity dependence within and between families (12 in Eurasia, 10 in North America). We found eight instances of within‐clade diversity dependence suppressing speciation rates and detected between‐clade effects increasing extinction rates in six instances. Diversity dependence often involved lineages that migrated between continents and we found that speciation was more responsive to diversity changes within the clade, whereas extinction responded to diversity of taxa in other clades. The analysis of the fossil record of Carnivora suggests that interactions within and between clades are associated with different speciation and extinction regimes, opening room for a broader theory of diversity dependence.     

Phylogeny and biogeography of the flowering plant genus Styrax (Styracaceae) based on chloroplast DNA restriction sites and DNA sequences of the internal transcribed spacer region

Phylogenetic relationships within the flowering plant genus Styrax were investigated with DNA sequence data from the internal transcribed spacer (ITS) region of nuclear ribosomal DNA (nrDNA) and with chloroplast DNA restriction site data from the genes trnK, rpoC1, and rpoC2. The data sets from each genome were analyzed separately and in combination with parsimony methods. The results strongly support the monophyly of each of the four series of the genus but provide little phylogenetic resolution among them. Reticulate evolution may at least partly explain discordance between the molecular phylogenetic estimates and a prior morphological estimate within series Cyrta. The historical biogeography of the genus was inferred with unweighted parsimony character optimization of trees recovered from a combined ITS and morphological data set, after a series of combinability tests for data set congruence was conducted. The results are consistent with the fossil record in supporting a Eurasian origin of Styrax. The nested phylogenetic position of the South American members of the genus within those from southern North America and Eurasia suggests that the boreotropics hypothesis best explains the amphi-Pacific tropical disjunct distribution occurring within section Valvatae. The pattern of relationship recovered among the species of section Styrax ((western North America + western Eurasia) (eastern North America + eastern Eurasia)) is rare among north-temperate Tertiary forest relicts. The monophyly of the group of species from western North America and western Eurasia provides qualified support for the Madrean-Tethyan hypothesis, which posits a Tertiary floristic connection among the semiarid regions in which these taxa occur. A single vicariance event between eastern Asia and eastern North America accounts for the pattern of relationship among intercontinental disjuncts in series Cyrta.     

The first reliable record of fossil leatherback sea turtle (Dermochelyidae) in northern Eurasia (Middle Eocene of Ukraine)

Plates of the epithecal bony shell of turtles of the family Dermochelyidae from the Middle Eocene (Lutetian) of the Ak-Kaya locality (Crimea, Ukraine) are described. This material, determined as Dermochelyidae indet., is the first reliable record of fossil dermochelyids in northern Eurasia.     

A Review of the Eurasian fossil species of the bee Apis

Fossil Apis species from the Oligocene, Miocene and Plio-Pleistocene of Eurasia are described and their relationships with Recent species are discussed. Several new populations of fossil bees are reported from the Oligocene and Miocene of France and Spain, including Apis aquisextusensis sp. nov. The present state of knowledge of fossil bee systematics is poor because of the general lack of preserved characters. Some of the problems, and items requiring further investigation, are identified.     

ORIGINS AND RELATIONSHIPS OF TROPICAL NORTH AMERICA IN THE CONTEXT OF THE BOREOTROPICS HYPOTHESIS

The boreotropics hypothesis postulates a preferential tropical biotic interchange between North America and Eurasia during the early Tertiary that was directed by Eocene thermal maxima and the close proximity of these two continental plates. This preferential interchange occurred at a time when South America was geologically and biotically isolated. A prediction of this hypothesis posits that a taxon with a present-day center of diversity in tropical North America, and with an early Tertiary fossil record from any region there, has a high probability of having sister-group relatives in the Paleotropics and derived relatives in South America. We propose a test of this prediction with phylogenetic studies of two pantropical taxa of Leguminosae that have early Tertiary North American fossil records. Our findings are consistent with the boreotropics hypothesis, and additional evidence suggests that many tropical elements in North America could be descendants of northern tropical progenitors. Ramifications of this hypothesis include the importance of integrating the fossil record with cladistic biogeographic studies, theoretical bases for recognizing tropical taxa with such disjunct distributions as Mexico and Madagascar, identification of taxa that may be most useful for testing vicariance models of Caribbean biogeography, and integrating the study of disjunct distributions in temperate regions of the northern hemisphere with those in the neo- and paleotropics.     

Insect traces on early Permian plants of India

The study of fossil leaves from the Glossopteris flora of the Lower Permian Gondwana sequence of the Barakar Formation of the Raniganj Coalfield, India, has revealed the presence of different types of insect traces. The structures are compatible with a variety of insect activities on fossil leaves. Nibbled and cuspate margins, trench marks, obliterated surfaces, blotch marks, and holes of various shape constitute feeding traces, whereas egg pouches along the midrib and irregularly distributed oviposition marks are traces of egglaying. Although fossil records of both insects and their activities in the Glossopteris flora of India remain scarce, the different types of insect traces identified in the present study demonstrate the existence of a diverse insect fauna during the Permian Period of India.     

Historical biogeography of scarabaeine dung beetles

Abstract Aim (1) To review briefly global biogeographical patterns in dung beetles (Coleoptera: Scarabaeidae: Scarabaeinae), a group whose evolutionary history has been dominated by ecological specialization to vertebrate dung in warmer climates. (2) To develop hypotheses accounting for the evolution of these patterns. Location Six principal biogeographical regions: Palaearctic, Oriental, Afrotropical, Australasia, Neotropical, Nearctic and five outlying islands or island groups harbouring endemic genera: Caribbean, Madagascar, Mauritius, New Caledonia, New Zealand. Methods Major patterns of tribal, generic and species distribution are investigated using cluster analysis, ordination, parsimony analysis of endemism and track analysis. Attempts are made to resolve biogeographical patterns with findings in the fields of plate tectonics, fossil and evolutionary history, plus phylogeny of both mammals and dung beetles. Results Because of conflict between published findings, it is uncertain at what point in time density of dinosaur dung, mammal dung or both became sufficiently great to select for specialized habits in dung beetles. However, biogeographical evidence would suggest a Mesozoic origin followed by further taxonomic radiation during the Cenozoic, possibly in response to the increasing size and diversity of mammalian dung types in South America and Afro‐Eurasia. Proportional generic distribution in fourteen tribes and subtribes showed four principal biogeographical patterns: (1) southerly biased Gondwanaland distribution, (2) Americas or (3) Madagascar endemism, and (4) northerly biased, Afro‐Eurasian‐centred distribution with limited numbers of genera also widespread in other regions. Proportional composition of faunas in eleven geographical regions indicated three principal distributional centres, East Gondwanaland fragments, Afro‐Eurasia and the Americas. These patterns probably result from three principal long‐term range expansion and vicariance events (Mesozoic: Gondwanaland interchange and fragmentation, Cenozoic: Afro‐Eurasian/Nearctic interchange and the Great American interchange). It is suggested that old vicariance caused by the Mesozoic fragmentation of Gondwanaland leads to a high degree of regional endemism at generic or tribal level across one or more Gondwanaland tracks. In contrast, it is suggested that the more recent Cenozoic range expansions occurred primarily towards northern regions leading to endemism primarily at species level. These Cenozoic radiations were facilitated by the re‐linking of continents, either because of tectonic plate movements (Africa to Eurasia in Miocene), climatically induced sea‐level change (Afro‐Eurasia to Nearctic in Miocene and Pleistocene), or similar coupled with orogenics (Nearctic to Neotropical in Pliocene). Speciation has followed vicariance either because of climatic change or physical barrier development. These recent range expansions probably occurred principally along an Afro‐Eurasian land track to the Nearctic and Neotropical and an Americas land track northwards from the Neotropics to the Nearctic, with limited dispersal from Eurasia to Australia, probably across a sea barrier. This accounts for the overall, spatially constrained, biogeographical pattern comprising large numbers of species‐poor genera endemic to a single biogeographical region and fewer more species‐rich genera, many of which show wider biogeographical distributions. In most southerly regions (Australasia, Madagascar, Neotropical), faunal composition and generic endemism is primarily dominated by elements with Gondwanaland ancestry, which is consistent with the Gondwanaland origin claimed for Scarabaeinae. In Afro‐Eurasia (Palaearctic, Oriental, Afrotropical), generic endemism of monophyletically derived Afro‐Eurasian and widespread lineages is centred in the Afrotropical region and faunal composition is numerically dominated by Afro‐Eurasian and widespread elements. In the Nearctic region, the fauna is jointly dominated by widespread elements, derived from Afro‐Eurasia, and Gondwanaland and Americas elements derived from the Neotropical region. Main conclusions Global biogeographical patterns in scarabaeine dung beetles primarily result from Mesozoic and Cenozoic range expansion events followed by vicariance, although recent dispersal to Australia may have occurred across sea barriers. Detailed phylogenetics research is required to provide data to support dispersal/vicariance hypotheses.     

The oldest Eurasian hominoid.

Engelswies is an early Miocene vertebrate locality in southern Germany with a rich assemblage of terrestrial mammals, invertebrates and fossil plants. It is dated to 16.5-17.0 Ma based on magnetostratigraphy, biostratigraphy and lithostratigraphy, and includes among the faunal remains a hominoid upper molar fragment, the oldest hominoid so far identified from Europe. The evidence from Engelswies suggests that hominoids arrived in Eurasia about 17 Ma, roughly contemporaneously with pliopithecoids and Deinotherium, and before the last marine transgression to isolate Eurasia from Africa. Thick enamel and low dentine penetrance may have been key adaptations that contributed to the success of hominoids of dentally modern aspect in western Eurasia and ultimately to their ability to spread to eastern Eurasia and Africa in the middle and late Miocene.     

Fossil ovipositions of dragonflies: Review and interpretation

The paper deals with the stratigraphic range and morphology of fossil formations on plants interpreted as insect ovipositions. Our analysis of the insect fossil record has shown that the endophytic ovipositions probably belong to the Kennedyina and Triadophlebiina (in the Paleozoic and Lower Mesozoic) and to the Calopterygina (in the Upper Mesozoic and Cenozoic).     

Sub-fossil beetle assemblages associated with the "mammoth fauna" in the Late Pleistocene localities of the Ural Mountains and West Siberia

The distribution of beetles at the end of the Middle Pleninglacial (=terminal Quaternary) was examined based on sub-fossil material from the Ural Mountains and Western Siberia, Russia. All relevant localities of fossil insects have similar radiocarbon dates, ranging between 33,000 and 22,000 C14 years ago. Being situated across the vast territory from the southern Ural Mountains in the South to the middle Yamal Peninsula in the North, they allow latitudinal changes in beetle assemblages of that time to be traced. These beetles lived simultaneously with mammals of the so-called "mammoth fauna" with mammoth, bison, and wooly rhinoceros, the often co-occurring mega-mammalian bones at some of the sites being evidence of this. The beetle assemblages found between 59° and 57°N appear to be the most interesting. Their bulk is referred to as a "mixed" type, one which includes a characteristic combination of arcto-boreal, boreal, steppe and polyzonal species showing no analogues among recent insect complexes. These peculiar faunas seem to have represented a particular zonal type, which disappeared since the end of the Last Glaciation to arrive here with the extinction of the mammoth biota. In contrast, on the sites lying north of 60°N, the beetle communities were similar to modern sub-arctic and arctic faunas, yet with the participation of some sub-boreal steppe components, such as Poecilus ravus Lutshnik and Carabus sibiricus Fischer-Waldheim. This information, when compared with our knowledge of synchronous insect faunas from other regions of northern Eurasia, suggests that the former distribution of beetles in this region could be accounted for both by palaeo-environmental conditions and the impact of grazing by large ruminant mammals across the so-called "mammoth savannas".     

Continental faunal exchange and the asymmetrical radiation of carnivores

Lineages arriving on islands may undergo explosive evolutionary radiations owing to the wealth of ecological opportunities. Although studies on insular taxa have improved our understanding of macroevolutionary phenomena, we know little about the macroevolutionary dynamics of continental exchanges. Here we study the evolution of eight Carnivora families that have migrated across the Northern Hemisphere to investigate if continental invasions also result in explosive diversification dynamics. We used a Bayesian approach to estimate speciation and extinction rates from a substantial dataset of fossil occurrences while accounting for the incompleteness of the fossil record. Our analyses revealed a strongly asymmetrical pattern in which North American lineages invading Eurasia underwent explosive radiations, whereas lineages invading North America maintained uniform diversification dynamics. These invasions into Eurasia were characterized by high rates of speciation and extinction. The radiation of the arriving lineages in Eurasia coincide with the decline of established lineages or phases of climate change, suggesting differences in the ecological settings between the continents may be responsible for the disparity in diversification dynamics. These results reveal long-term outcomes of biological invasions and show that the importance of explosive radiations in shaping diversity extends beyond insular systems and have significant impact at continental scales.     

Evolution of bird communities in the Neogene of Central Asia,with a review of the Neogene fossil record of Asian birds

A complete taxonomic review of Neogene birds of continental Asia is provided. To date, avifauna from the latter half of the Miocene and Pliocene of Central Asia (Mongolia and adjacent regions of Inner Asia) are most thoroughly investigated. Available data enable a reconstruction of successive replacement of Early and Middle Miocene avifaunas by communities of the Recent type. Middle Miocene avifaunas of Mongolia include a great number of extinct genera and species, many of which were widespread in Eurasia. Extant genera became dominant in the Late Miocene and taxa close to living species appear in the Late Pliocene fossil record. Late Pliocene communities of birds of Central Asia were complex in genesis, composed of Miocene relicts (Struthio), immigrants from the European regions of the Palearctic (phasianid Plioperdix), North American immigrants (Calcarius), and also autochthonous elements, the origin of which is apparently connected with the arid belt of Central Asia (diverse passerines).     

Insect Leaf-Chewing Damage Tracks Herbivore Richness in Modern and Ancient Forests

The fossil record demonstrates that past climate changes and extinctions significantly affected the diversity of insect leaf-feeding damage, implying that the richness of damage types reflects that of the unsampled damage makers, and that the two are correlated through time. However, this relationship has not been quantified for living leaf-chewing insects, whose richness and mouthpart convergence have obscured their value for understanding past and present herbivore diversity. We hypothesized that the correlation of leaf-chewing damage types (DTs) and damage maker richness is directly observable in living forests. Using canopy access cranes at two lowland tropical rainforest sites in Panamá to survey 24 host-plant species, we found significant correlations between the numbers of leaf chewing insect species collected and the numbers of DTs observed to be made by the same species in feeding experiments, strongly supporting our hypothesis. Damage type richness was largely driven by insect species that make multiple DTs. Also, the rank-order abundances of DTs recorded at the Panamá sites and across a set of latest Cretaceous to middle Eocene fossil floras were highly correlated, indicating remarkable consistency of feeding-mode distributions through time. Most fossil and modern host-plant pairs displayed high similarity indices for their leaf-chewing DTs, but informative differences and trends in fossil damage composition became apparent when endophytic damage was included. Our results greatly expand the potential of insect-mediated leaf damage for interpreting insect herbivore richness and compositional heterogeneity from fossil floras and, equally promisingly, in living forests.     

现代人出现和演化的化石证据

近年来,新材料的发现、新测年结果的更新以及分子生物学的加入,刷新了关于现代人在各主要区域出现时间、在迁徙扩散中与古老人群的交流模式、晚更新世晚期现代人演化复杂场景等方面的认识。本文梳理了关于现代人出现和演化路径的主要化石证据和研究成果。目前化石证据显示：非洲准现代人的出现时间最早可到MIS 9阶段,非洲现代人在中更新世晚期到晚更新世化石证据连续;欧亚大陆现代人的出现时间可追溯到MIS 6阶段,在MIS 5a-MIS 4阶段经历“瓶颈期”,在MIS 3阶段开始广泛分布。从已有证据来看,MIS 3和MIS 2阶段,欧亚大陆不同区域的现代人演化链条并非单一线性,而是呈现有断点的“网状”演化模式。