Spatial structure of fish assemblages in a tropical estuarine lagoon: combining multivariate and geostatistical techniques

The spatial structure and seasonal changes of estuarine fish assemblages in the Ciénaga Grande de Santa Marta (CGSM) were analysed based on four seasonal comprehensive surveys conducted in 1993-1994 and 1997. Geostatistical and multivariate techniques were used to: (a) determine seasonal changes in spatial distribution of the species richness, and (b) identify assemblages of estuarine fish and their relation to abiotic factors. Potential biotic interactions affecting the assemblage structure were also explored. A total of 11075 individuals representing 39 species were collected, with Eugerres plumieri, Diapterus rhombeus, Micropogonias furnieri, Mugil incilis, Cathorops spixii, Elops saurus and Anchovia clupeoides as dominant species between seasons. Spatial distribution of fish richness differed between rainy and dry seasons in each year, whereas species mapping showed spatial patchiness in 1993-1994 and gradients during 1997. Strong evidence of species saturation was found in all seasons, suggesting biotic interactions limiting species richness at a threshold density of ca. 50 ind./5000 m². Marine, marine-estuarine and freshwater species were classified in each season according to their capability to cope with salinity fluctuations. Associations defined by functional feeding guilds were also identified. Empirical and statistic evidence showed that fish assemblages differed between seasons within each year, and each assemblage was always dominated by a small number of species, notably E. plumieri in both years 1993-1994 and 1997. Between-season differences in fish assemblage structure in the CGSM seem to be driven by abiotic factors; however, evidence of species saturation could suggest the existence of density-dependent factors operating together.     

Temporal variation and succession in an algal-dominated high intertidal assemblage

We determined whether temporal variation and succession were similar among sites with similar species composition by sampling unmanipulated and cleared plots in a high intertidal assemblage dominated by Endocladia muricata and Mastocarpus papillatus. Sampling was done for 6 years at six sites spanning over 4° of latitude in California. Ten 1×2-m permanent plots were chosen in the central portion of the assemblage at each site. Four of these served as unmanipulated controls, three were cleared (scraped and burned) in the spring of 1985, and three were cleared in the fall of 1985. The cover of sessile and density of motile species were determined by subsampling within the plots from 1985 until 1991. Recovery of the clearings was determined by their similarity to the controls. The algae E. muricata, M. papillatus, and Fucus gardneri, and the barnacle Balanus glandula, were the most abundant sessile organisms in the control plots, although the latter never exceeded 12% cover at any site. The grazing gastropods Littorina scutulata/plena, various limpets, and Tegula funebralis were the most common mobile organisms. The species composition of the common species remained constant in the control plots over the study period and there were few large changes in relative abundance. Significant seasonal variation was detected in 11 species but variation was commonly site-specific.Ephemeral algae were abundant during early succession at only two of the six sites, and barnacle cover was low (<15% cover) at four sites and moderate (15-50% cover) at the remaining two throughout succession. Recovery rate varied considerably among sites and between times of clearing (1-10%/month). Correlations between ephemeral algae and grazer abundance, and between these variables and recovery rate were not significant. The effects of grazers on recovery rate were only evident at one site where they appeared to reduce an initially high cover of ephemeral algae and delay the establishment of perennials. Some of the largest differences in recovery rate were between clearing times, associated with differences in the phenology of the dominant perennial algae. In spite of these differences, most plots recovered by the end of the study period.These results indicate that the assemblages in the control plots at each site were relatively stable and, while successional pathways and processes varied, the assemblage at most sites still recovered. Current models, based largely on biological interactions, that attempt to explain within assemblage structure and succession were not broadly applicable.     

Spatial and temporal distributions of epiphytic diatoms growing on Thalassia testudinum Banks ex König: relationships to water quality

The spatial and temporal distributions of the epiphytic diatom flora on Thalassia testudinum was described within the Florida Bay estuary and at one Atlantic site east of the Florida Keys over a 1-year period. Species of the genus Mastogloia dominated the epiphytic diatom flora (82 out of 332 total species). Nonmetric Multidimensional Scaling (NMDS) and Analysis of Similarity (ANOSIM) revealed four distinct spatial assemblages and two temporal assemblages. Eastern and western Florida Bay assemblages were identified within the estuary. The eastern diatom assemblage was characterized by high relative abundances of Brachysira aponina and Nitzschia liebetruthii, while the western assemblage was characterized by the abundance of Reimerothrix floridensis, particularly during summer. Two diverse and distinct marine assemblages, one located in the Gulf of Mexico along the western edge of Florida Bay and the other behind the Florida reef tract in the Atlantic Ocean, were also identified. Analysis of the spatial distribution of diatoms and water quality characteristics within Florida Bay suggest that these assemblages may be structured by salinity and nutrient availability, particularly P. The Gulf of Mexico and the western Florida Bay assemblages were associated with higher water column salinities and TP concentrations and lower DIN concentrations and TN:TP ratios relative to the eastern Florida Bay assemblage. The temporal variation in diatom assemblages was associated with water temperature, though temporal indicator species were few relative to the number of spatial indicators. Electronic supplementary material Electronic supplementary material is available for this article at and accessible for authorised users.     

Spatial and seasonal dynamics of fish assemblage along river Soan,Pakistan and its relationship with environmental conditions

This study aims to discuss the seasonal and spatial dynamics of fish assemblage of River Soan in relation with environmental changes. Survey was conducted during pre monsoon and post monsoon seasons in 2008. Physico chemical and biological samplings were carried out at 26 sites which were selected along the whole stretch of the river. High concentration of total phosphorous and conductivity, low pH and dissolved oxygen were measured at urban part of midstream zone whereas high concentration of total nitrogen was measured at downstream zone. A total of 22 species were collected during the survey among which Barilius pakistanicus, Puntius ticto, Crossocheilus diplochilus and Labeo dero were distributed throughout the river stretch. Maximum fish diversity was recorded at suburban part of midstream while its urban part was appeared to be the most species poor part of the Soan River. Herbivore individuals constituted the dominant trophic group of fish assemblage. Significant seasonal and spatial changes in fish assemblage were determined at river downstream. Upstream- downstream differences in fish assemblage were more pronounced during pre monsoon and seem to be related to thermal gradient and hydrological changes. Seasonal variations in fish assemblage were significant only at downstream zone and were influenced by velocity, floodplains and migration patterns in fish assemblage. Understanding of spatial and seasonal trends in fish assemblage in relation with their environment is of great importance for the management and conservation of fish assemblage. Findings of this study will be helpful in future attempts to restore and conserve the aquatic assemblages of Himalayan streams.     

Spatial variation and effects of habitat on temperate reef fish assemblages in northeastern New Zealand

Reef-associated fishes can respond to changes in habitat structure and the nature of their response can change with different spatial scales of observation. A structured hierarchical mensurative sampling design was used to sample temperate reef fish assemblages in northeastern New Zealand at several spatial scales over 2 years. The three spatial scales examined were tens of meters (transects), hundreds to thousands of meters (sites) and hundreds of kilometers (locations). We tested the hypothesis that fish assemblages differed between kelp forest habitat (relatively dense stands of the kelp, Ecklonia radiata (C. Agardh) J. Agardh, median depth=13.5 m) and barrens habitat (rocky reef dominated by turfing and encrusting red algae and the grazing urchin, Evechinus chloroticus (Valenciennes), median depth=6.7 m). Recently developed multivariate techniques were used to test for and quantify multivariate variation at different spatial scales. There were significant effects of habitat on the spatial distribution of fish assemblages, characterised by greater abundances or frequencies of Parika scaber, Chromis dispilus, Trachurus novaezelandiae, Nemadactylus douglasii, Bodianus unimaculatus, Odax pullus and Pseudolabrus miles in kelp forest habitat, and greater abundances or frequencies of Notolabrus celidotus, Notolabrus fucicola, Girella tricuspidata, Coris sandageri, Chironemus marmoratus, Parma alboscapularis, Scorpis violaceus and Kyphosus sydneyanus in barrens habitat. Some of the more common species, including Upeneichthys lineatus, Scorpis lineolatus and Cheilodactylus spectabilis showed no strong consistent effects of these two differing habitats on their distributions. There was, however, a significant Habitat×Locations interaction: effects of habitat did not occur at all locations. Variability was highest at the scale of individual transects and variability from site to site and from location to location was comparable. Spatial variation was large compared to inter-annual variation, which was minimal, and spatial patterns were consistent in the 2 years examined. Further experiments, including manipulations, are required to understand what mechanisms and processes might be driving these patterns. This study, coupled with results from previous studies, suggests that there may be a dynamic inter-play between effects of habitat on fish and effects of fish on biogenic habitat, such as kelp forests.     

Ecology and distribution of diatoms in Biscayne Bay,Florida (USA): Implications for bioassessment and paleoenvironmental studies

The spatial and temporal distribution of planktonic, sediment-associated and epiphytic diatoms among 58 sites in Biscayne Bay, Florida was examined in order to identify diatom taxa indicative of different salinity and water quality conditions, geographic locations and habitat types. Assessments were made in contrasting wet and dry seasons in order to develop robust assessment models for salinity and water quality for this region. We found that diatom assemblages differed between nearshore and offshore locations, especially during the wet season when salinity and nutrient gradients were steepest. In the dry season, habitat structure was primary determinant of diatom assemblage composition. Among a suite of physicochemical variables, water depth and sediment total phosphorus (STP) were most strongly associated with diatom assemblage composition in the dry season, while salinity and water total phosphorus (TP) were more important in the wet season. We used indicator species analysis (ISA) to identify taxa that were most abundant and frequent at nearshore and offshore locations, in planktonic, epiphytic and benthic habitats and in contrasting salinity and water quality regimes. Because surface water concentrations of salts, total phosphorus, nitrogen (TN) and organic carbon (TOC) are partly controlled by water management in this region, diatom-based models were produced to infer these variables in modern and retrospective assessments of management-driven changes. Weighted averaging (WA) and weighted averaging partial least squares (WA-PLS) regressions produced reliable estimates of salinity, TP, TN and TOC from diatoms (r² = 0.92, 0.77, 0.77 and 0.71, respectively). Because of their sensitivity to salinity, nutrient and TOC concentrations diatom assemblages should be useful in developing protective nutrient criteria for estuaries and coastal waters of Florida.     

Comparison of spatial scale variability of shoot density and epiphytic leaf assemblages of Halophila stipulacea and Cymodocea nodosa on the Eastern Coast of Tunisia

Abstract

A study was undertaken to compare the patterns of spatial variability, epiphytic percentage cover, and distribution of epiphytic fauna and flora between the two adjacent seagrasses Cymodocea nodosa and the invasive species Halophila stipulucea. Samples were taken at six stations separated by 600?m and exposed to different current conditions. The stations G2 and G5 were affected by a high current tide, while G4 was directly exposed to the northern marine currents. The station G3 was situated in the middle of a Posidonia oceanica bed and was less exposed to hydrodynamism, whereas the other stations were relatively protected. Results indicate that for both H. stipulacea and C. nodosa, shoot density and epiphytic cover biomass decreased when exposed to high levels of hydrodynamic activity. In terms of epiphytic leaf assemblages, our results showed significant differences for the two host plants in their mean cover and for the six stations at the largest and smallest spatial scale. Our observations highlight the dominance of Rhodophyta and the low number of epiphytic species and the epiphytic cover on H. stipulacea compared to C. nodosa. In addition, results indicate the absence of two taxa Hydrozoans and Annelida in the epiphytic assemblage of H. stipulacea leaves.     

Variable responses within epiphytic and benthic microalgal communities to nutrient enrichment

We evaluated how changes in nutrient supply altered the composition of epiphytic and benthic microalgal communities in a Thalassia testudinum (turtle grass) bed in Florida Bay. We established study plots at four sites in the bay and added nitrogen (N) and phosphorus (P) to the sediments in a factorial design. After 18, 24, and 30 months of fertilization we measured the pigment concentrations in the epiphytic and benthic microalgal assemblages using high performance liquid chromatography. Overall, the epiphytic assemblage was P-limited in the eastern portion of the bay, but each phototrophic group displayed unique spatial and temporal responses to N and P addition. Epiphytic chlorophyll a, an indicator of total microalgal load, and epiphytic fucoxanthin, an indicator of diatoms, increased in response to P addition at one eastern bay site, decreased at another eastern bay site, and were not affected by P or N addition at two western bay sites. Epiphytic zeaxanthin, an indicator of the cyanobacterial/coralline red algae complex, and epiphytic chlorophyll b, an indicator of green algae, generally increased in response to P addition at both eastern bay sites but did not respond to P or N addition in the western bay. Benthic chlorophyll a, chlorophyll b, fucoxanthin, and zeaxanthin showed complex responses to N and P addition in the eastern bay, suggesting that the benthic assemblage is limited by both N and P. Benthic assemblages in the western bay were variable over time and displayed few responses to N or P addition. The contrasting nutrient limitation patterns between the epiphytic and benthic communities in the eastern bay suggest that altering nutrient input to the bay, as might occur during Everglades restoration, can shift microalgal community structure, which may subsequently alter food web support for upper trophic levels.     

Quantifying Shark Distribution Patterns and Species-Habitat Associations: Implications of Marine Park Zoning

Quantifying shark distribution patterns and species-specific habitat associations in response to geographic and environmental drivers is critical to assessing risk of exposure to fishing, habitat degradation, and the effects of climate change. The present study examined shark distribution patterns, species-habitat associations, and marine reserve use with baited remote underwater video stations (BRUVS) along the entire Great Barrier Reef Marine Park (GBRMP) over a ten year period. Overall, 21 species of sharks from five families and two orders were recorded. Grey reef Carcharhinus amblyrhynchos, silvertip C. albimarginatus, tiger Galeocerdo cuvier, and sliteye Loxodon macrorhinus sharks were the most abundant species (>64% of shark abundances). Multivariate regression trees showed that hard coral cover produced the primary split separating shark assemblages. Four indicator species had consistently higher abundances and contributed to explaining most of the differences in shark assemblages: C. amblyrhynchos, C. albimarginatus, G. cuvier, and whitetip reef Triaenodon obesus sharks. Relative distance along the GBRMP had the greatest influence on shark occurrence and species richness, which increased at both ends of the sampling range (southern and northern sites) relative to intermediate latitudes. Hard coral cover and distance across the shelf were also important predictors of shark distribution. The relative abundance of sharks was significantly higher in non-fished sites, highlighting the conservation value and benefits of the GBRMP zoning. However, our results also showed that hard coral cover had a large effect on the abundance of reef-associated shark species, indicating that coral reef health may be important for the success of marine protected areas. Therefore, understanding shark distribution patterns, species-habitat associations, and the drivers responsible for those patterns is essential for developing sound management and conservation approaches.     

Stasis or kinesis? Hidden dynamics of a rocky intertidal macrophyte mosaic revealed by a spatially explicit approach

Macrophyte mosaics, or tile-like assemblages of turfy marine macroalgae and surfgrass (Phyllospadix scouleri), are persistent and highly diverse along the central Oregon coast. To test the hypothesis that spatial pattern and species abundances are relatively invariant in this system, we studied community structure, disturbance, and species interactions from 1985 to 1990. Abundances and disturbance in permanently marked plots at each of five sites spanning wave-exposed to wave-protected areas were monitored photographically each year. The analysis was spatially explicit, incorporated position effects, and allowed determination of species displacements. To interpret the potential influence of substratum on disturbance, we quantified rock hardness and sediment depth at each site. Field experiments tested the role of grazers and spatial interactions on maintenance of between-patch boundaries.Mosaic dynamics varied with wave exposure. At wave-exposed and wave-protected sites, average patterns of abundance and assemblage structure were relatively constant through time, but analysis of transition probabilities showed high rates of change among mosaic elements at wave-exposed sites and low rates of change at wave-protected sites. At wave-exposed sites, most changes involved Phyllospadix displacing neighboring macroalgal turfs but rarely the reverse. At all wave-exposures, surfgrass was the most frequently disturbed mosaic element. Disturbed areas were quickly colonized by macroalgae. At wave-exposed sites, disturbances were closed by regrowth of surfgrass. Disturbance rates were similar across wave-exposures, with wave forces causing most loss at wave-exposed sites and a combination of substratum failure and sediment burial causing most loss at wave-protected sites. At wave-exposed sites, disturbances tended to be larger (436.7 vs. 278.6 cm²) but less numerous (228 vs. 484 total disturbances) than at wave-protected sites.At wave-exposed sites, surfgrass overgrew all other species except the kelp Lessoniopsis littoralis, which was competitively equivalent to surfgrass. Grazing had no effect on spatial interactions. Disturbance prevented surfgrass monocultures, and with variable dispersal and patchy recruitment, maintained mosaic structure. At wave-protected sites, standoffs were the usual outcome of interactions, and patchiness resulted primarily from colonization of disturbances and subsequent succession. Like mussels, Phyllospadix are simultaneously dominant competitors, the most disturbance-susceptible species, and poor colonizers. These features are shared by theoretical models exploring the processes underlying spatially structured assemblages, and may characterize spatially structured systems in general.     

Factors affecting spatial and temporal distribution of Ostracoda assemblages in different macrophyte habitats of a shallow lake (Lake Fehér,Hungary)

Spatial and temporal distribution, abundance and habitat preferences of ostracod assemblages were studied in various habitats of Lake Fehér in Hungary. Of the 20 species Fabaeformiscandona hyalina and Cypridopsis hartwigi are new to Hungary. Significant spatial differences were recorded in the composition and abundance of the Ostracoda assemblages in the different habitats. The most diverse and abundant assemblages were found in the reed-belt, however, the mean abundance of the species differed in the different macrophyte communities of the reed-belt. The species richness and abundance were considerably lower in disturbed sites than in the other habitats. Most of the 20 species showed distinct habitat preferences and ecological tolerances. Especially the presence and coverage of the vegetation and the dissolved oxygen content influenced the distribution and abundance of the species.     

DISTRIBUTION OF ALGAL EPIPHYTES ACROSS ENVIRONMENTAL GRADIENTS AT DIFFERENT SCALES: INTERTIDAL ELEVATION,HOST CANOPIES,AND HOST FRONDS1

Understanding epiphyte distribution in coastal communities is important because these organisms affect many others directly or indirectly. Yet, their distribution has been considerably less studied than that of their hosts and other primary‐space holders. Identifying major sources of variation in epiphyte abundance is thus still a need. Environmental gradients help predict species distribution and are pervasive on marine shores. In this study, we test the notion that environmental gradients across intertidal elevation, throughout host canopies, and along host fronds explain a large variation in the abundance of sympatric epiphytes. Our model system was the assemblage of Ascophyllum nodosum (L.) Le Jol. and its epiphytes Vertebrata lanosa (L.) T. A. Chr. [= Polysiphonia lanosa (L.) Tandy], Elachista fucicola (Velley) Aresch., and Pylaiella littoralis (L.) Kjellm. On the coast of Nova Scotia (Canada), we found evidence of a spatial segregation among these species at almost all scales. While the red epiphyte V. lanosa was more common at high‐ and midintertidal elevations (peaking at midelevations) and on middle segments of host fronds, the brown epiphytes E. fucicola and P. littoralis were more common at low elevations and restricted to distal segments of host fronds. Canopy habitat affected abundance only for V. lanosa, which was more common within the host canopy than on its periphery at midelevations. Since the studied gradients are related to predictable changes in abiotic factors, the identification of likely causes behind the observed patterns was facilitated. Our study ends by proposing abiotic and biotic factors that deserve priority in the experimental testing of the forces structuring this assemblage.     

Geographical and seasonal patterns of epiphytic diatoms on a subtropical mangrove (Kandelia candel) in southern China

Geographical and seasonal patterns of epiphytic diatoms on a subtropical mangrove (Kandelia candel (L.) Druce) were examined at four sites in southern China. A total of one hundred and three epiphytic diatom species and varieties belonging to 40 genera were identified. Dominant species included Nitzschia fasciculata, Luticola mutica and Achnanthes javanica var. subcontricta. Further analysis using canonical correspondence analysis revealed three diatom associations which could be closely related to environmental variables such as salinity and nutrients resources of nitrogen and phosphate. Epiphytic diatom assemblages on roots would be a good indicator for the evaluation of water quality in mangroves.     

Benthic foraminiferal assemblages in the severely polluted coastal environment of Drapetsona-Keratsini,Saronikos Gulf (Greece)

Surface sediments were collected from the coastal zone of Drapetsona–Keratsini (Saronikos Gulf, Greece) in December 2012 for determining the local benthic foraminiferal community, identifying their spatial distribution patterns, and evaluating the response of foraminiferal species to geochemical composition through the hierarchical cluster analysis, principal component analysis and Spearman's rho correlation. Foraminifera can be classified into three distinct assemblages associated with the granulometry, elemental geochemistry, particulate organic carbon content and degree of sediment contamination. A relatively low-diversity assemblage, dominated by stress-tolerant taxa with Ammonia tepida Bolivina spathulata and Bulimina elongata being the prevailing species, is characteristic of the silty seabed of the main part of Drapetsona coastal zone and the Keratsini Port central basin, where organic carbon content, aliphatic and polycyclic aromatic hydrocarbons concentrations and trace metal loads are greatly elevated. On the sandy bottom of the investigated area, relatively high frequencies of miliolids prevail. An epiphytic rotaliid-dominated assemblage is recorded in the slightly-polluted sedimentary bottom of the inner and western part of the Keratsini Port.     

The distribution of hydroids (Cnidaria, Hydrozoa) from micro- to macro-scale: Spatial patterns on habitat-forming algae

Scaling up from local, short-term experiments to larger-area and longer-term ones is crucial to address the role of scale in ecology. Few studies, however, examined large-scale spatial variability in the distribution and abundance of marine organisms, with rare attempts to directly compare spatial variation at local (centimetres-metres) vs. regional (1000's of kilometres) scale. Here, we used a hierarchical design to describe the spatial distribution of the hydroids epiphitic of the brown alga Cystoseira amentacea, a habitat-forming species that provides a continuous, extensive settling substrate at regional scale along the rocky coasts in the Mediterranean Sea. This continuity provides the potential to deal with scale-related variability, increasing area of investigation without adding differences deriving from habitat heterogeneity or changes in topographic complexity. Hydroids were selected for their abundance and for their life cycle features (rapid growth, small body size, early sexual or asexual reproduction and short life span), allowing rapid responses to changes in environmental conditions. The aim of this study was to analyse whether the structure of hydroid assemblages living on C. amentacea had a consistent pattern of variation among three portions of the algal thallus (i.e., basal, middle, and distal) across a spectrum of scales and whether having or not a pelagic stage could exert a significant influence on the distribution patterns of the species. A total of 32 species were identified. Multivariate analyses showed that hydroid colonization of Cystoseira occurs differently along each thallus, with patterns of variation in the structure of assemblages differing at an even smaller spatial scale than that of single plants. However, such differences varied from patch to patch. Among the 14 species identified as “important” to define the hydroid assemblage inhabiting Cystoseira, only one (Clytia hemisphaerica) has free medusae, the other species reproducing by fixed gonophores or by short-lived medusoids. Univariate analysis showed significant differences among portions of thalli in terms of spatial variability at the various scales investigated, thus suggesting that patterns of multivariate variation along the three portions of thalli might vary across scale. Overall, our results suggest that patterns of distribution of hydroids along C. amentacea thalli significantly vary across spatial scales but that the observed differences can be hardly interpreted on the basis of life-cycle patterns.     

Food habits of fishes in the surf zone of a sandy beach at Sanrimatsubara, Fukuoka Prefecture, Japan

To clarify the feeding habits of fishes in surf zones, the gut contents of 19 fish species collected in the surf zone of a sandy beach at Sanrimatsubara, western Japan, were examined. Ontogenetic changes in food preference were recognized in seven species (Mugil cephalus cephalus, Lateolabrax latus, Sillago japonica, Paralichthys olivaceus, Paraplagusia japonica, Takifugu poecilonotus, and Takifugu niphobles). A cluster analysis based on dietary overlaps showed that the surf zone fish assemblage comprised six trophic groups (zooplankton, benthic and epiphytic crustacean, detritus, polychaete, fish, and insect feeders). Of these, the most abundant trophic group was zooplankton feeders, along with benthic and epiphytic crustacean feeders.     

Distribution of recent foraminiferal assemblages near the Ombrone River mouth (Northern Tyrrhenian Sea, Italy)

Benthic foraminiferal assemblages in 127 samples, collected at water depth, ranging between 15 and 184 m on the Southern Tuscany continental shelf off the Ombrone River were analysed. Statistical analyses (Cluster and Principal Component Analysis) performed on the 48 most abundant species (>5%) and sedimentological data led to the identification of three clusters related to the size of grain sediment (sand, silt or clay). Q-mode cluster analysis singled out six groups, corresponding to six distinct foraminiferal assemblages: a typical infralittoral assemblage (15-39 m) on sandy silt, clayey silt or silty clay, dominated by Ammonia and Elphidium species, with Eggerelloides scabrus, Rectuvigerina phlegeri and Valvulineria bradyana; a second assemblage (24-78.5 m) associated with vegetated environments or sandy bottoms (Elphidium crispum, Rosalina bradyi, Asterigerinata mamilla, Neoconorbina terquemi, and Tretomphalus concinnus); a third assemblage recognised between 30 and 90 m water depth and characterised by the dominance of the opportunistic species V. bradyana (related to silty bottoms), with Bulimina marginata, R. phlegeri, Ammonia inflata and Ammonia beccarii as other common taxa; an upper circalittoral assemblage (70-100 m) on silty clays, containing B. marginata, Cassidulina carinata and V. bradyana; a lower circalittoral assemblage (95-177 m) on clayey bottoms, with B. marginata, Textularia bocki and Uvigerina mediterranea; and finally, a second lower circalittoral assemblage (104-184 m) on clayey sediments, dominated by two Uvigerina species (U. mediterranea and Uvigerina peregrina), with Sphaeroidina bulloides and B. marginata. The typical V. bradyana assemblage, characterised by relatively low diversity and high dominance, marks the most eutrophicated area running parallel to the coast. The spatial distribution of assemblages is closely associated with sea-bottom sedimentary environments and bathymetry but it is also probably influenced by the outflow of the Ombrone River. The composition, structure and distribution of V. bradyana assemblage suggest an environmental model, useful for paleogeographic reconstruction in areas characterised by a river mouth and a closed morphological setting typical of a nutrient-trap.     

Patterns in the local assembly of Egyptian rodent faunas: Areography and species combinations

We implicate ecological processes in assembly patterns of Egyptian desert rodents using spatial variation of distribution and composition of local assemblages. We also compare our assemblages to prior analyses of North American and Australian small mammal communities in terms of species richness and representation of trophic groups.We studied patterns of occurrence of 29 rodent species among 335 collecting events in 308 sites using museum specimen records resulting from a country-wide survey. The studied taxa vary greatly in their natural histories and ecology. Fully 69% of studied species (20) were localized in 30 or fewer sites (9% of all sites). Site incidence was closely correlated with the geographic range size of species, while local abundance of a species showed little relationship to its geographic range. The species richness of local assemblages ranged from a lone species at 73 sites to 11 species at 3 sites. A total of 214 different combinations were recorded of which 164 (77%) were unique to a single site. G. gerbillus was both the most abundant and most ubiquitous species. Coexistence with other species was positively correlated with incidence and geographic range size. Body mass distribution was remarkably uniform for the fauna as a whole, and influenced the geographic distributions and abundance of individual species.Our sites have low species richness and substantial variability in species composition, which also characterize desert rodent communities elsewhere. Habitat requirements, exclusive distributions of sibling species, low primary productivity, and Egypt's location all influenced species assembly. The Egyptian and Australian deserts supported higher proportions of low richness assemblages compared to North America. As in North America, Egyptian sites were dominated by granivorous species.     

Analysis of fish communities along a rural–urban gradient in a neotropical stream (Piracicaba River Basin,São Paulo,Brazil)

This study investigated the fish fauna of a stream in southeastern Brazil that runs through sugar cane-growing and urban areas that are subject to sewage discharge. It aimed to determine the importance of spatial and environmental factors on fish distributions and to assess the use of fish as indicators of the environmental conditions. A longitudinal pattern of chemical water quality was observed, with more disturbed conditions at the urban sites. Several opportunistic or tolerant and omnivorous species such as Astyanax altiparanae, Poecilia reticulata, and Astyanax fasciatus were numerically abundant at these urban sites, which resulted in a consistent increase in species density and biomass along the stream. Redundancy analysis extracted three axes, identifying a nutrient–productivity gradient associated with different species composition patterns, as also detected by the indicator species analysis. No species could be considered a potential indicator of the agricultural area in the dry season, whereas four different species were judged potential indicators of three urban sites. In order to explain species distribution, variation in species abundance was partitioned into spatial and environmental components. The latter was more important, explaining 25.4% of the variation. We concluded that the fish assemblage of the Guamium stream is undergoing the initial stages of disturbance, with pronounced effects at the urbanized area, but no detectable changes at the sugar cane sites. Therefore, fish assemblages might be used as ecological indicators to detect urban impacts in similar rivers. However, the potential use of fish to diagnose stressors in areas of sugar cane plantations should be complementary to more comprehensive studies aimed at understanding the influence of this crop on freshwater resources.     

Spatial-temporal distribution of preimaginal blackflies in Neotropical streams

The current study investigates the spatial-temporal distribution of preimaginal blackflies in three a priori established, adjacent areas of Brazil and Venezuela. First we tested the hypothesis that the distribution of individual simuliid species, over two geographic scales, were predictable on the basis of several habitat parameters. Secondly, we determined if local species assemblages remain constant over two spatial axes, i.e., were species assemblages predictable within and between defined regions. Finally we compared the species assemblage between Venezuelan streams sampled in both the wet (October) and dry (February) seasons. As stream conditions changed across a north–south gradient, so did the occurrence of the most common species. This change in species composition from upland to lowland areas is consistent with the patterns of faunal change seen in North American simuliid assemblages. Discriminant Function Analysis showed a strong association between regional demarcations and stream site conditions. These results were paralleled by the strong correspondence between species assemblages and these regions. Thus each region presented both distinct stream environments and species assemblages. Monte Carlo analysis suggests that some if not all species are not only present in both the wet and dry season but that they are continuing to use the same stream sites. Three broad contingent rules for blackfly species assemblages in new world streams are put forward; (i) the ubiquitous nature of simuliids; (ii) species often distribute themselves along an axis of stream size and; (iii) there is a strong and consistent correspondence between regional characteristics of streams and the species assemblage.