The Morphology of Three Loxophyllum Species (Ciliophora,Pleurostomatida) from Southern China,L. lembum sp. n., L. vesiculosum sp. n. and L. perihoplophorum Buddenbrock, 1920, with Notes on the Molecular Phylogeny of Loxophyllum

Two new pleurostomatid ciliates, Loxophyllum lembum sp. n., L. vesiculosum sp. n., and the poorly known L. perihoplophorum Buddenbrock, 1920, isolated from brackish waters in coastal regions of southern China, are described following observations of live cells and protargol‐impregnated specimens. Loxophyllum lembum sp. n. is distinguished by a combination of characters including two macronuclear nodules, 6–9 contractile vacuoles along the ventral margin, 11–14 right and 6–8 left kineties and the presence of cortical granules. Loxophyllum vesiculosum sp. n. differs from its congeners mainly by the unique distribution of contractile vacuoles, several of which lie along the dorsal margin and one on the ventral margin, and 15–21 right and 6–8 left kineties. Loxophyllum perihoplophorum is characterized by its large cell size (350–450 μm long in vivo), 3–5 contractile vacuoles along the dorsal margin in the posterior region of the body, and 19–23 right and 7–9 left kineties. An improved diagnosis of L. perihoplophorum is provided. The SSU rDNA sequence of L. perihoplophorum is reported for the first time and its molecular phylogeny is analyzed. Maximum likelihood and Bayesian inference analyses of SSU rDNA sequence data recover the monophyly both of the order Pleurostomatida and of the genus Loxophyllum.     

Morphology, morphometrics, and molecular characterization of Bryophrya gemmea n. sp. (Ciliophora, Colpodea): implications for the phylogeny and evolutionary scenario for the formation of oral ciliature in the order Colpodida

We studied the morphology, morphometry, resting, and reproductive cysts, as well as the molecular phylogeny of Bryophrya gemmea n. sp., a colpodid ciliate that was discovered in ephemeral puddles in Idaho, northwest United States. This new species is distinguished from congeners by the irregularly pentagonal adoral organelles, four to five vestibular kineties, the single micronucleus, and one to three rows of brightly refractive protuberant interkinetal cortical granules to the right of the preoral suture. Resting cysts have two distinct membranes and an outer mucous coat. As typical for most colpodids, reproduction occurs in division cysts but details of ontogenesis are unknown. The 18S rRNA gene sequence shows only weak support for the phylogenetic relationship between Bryophrya and the bryophryid genus Notoxoma previously inferred from morphologic characters. Further, our molecular phylogenies classify bryophryids rather basal within the order Colpodida, not supporting ordinal status suggested by morphologists. Based on molecular data and morphologic characters, the colpodid genus Ilsiella is removed from the family Marynidae and placed in a new family, Ilsiellidae. Considering the molecular data, an evolutionary scenario for the formation of colpodid oral structures from a cyrtolophosidid ancestor through a bryophryid intermediate is proposed.     

Interpreting soil ciliate biodiversity

The results of soil ciliate frequency studies of 47 field studies, from 12 ecosystem types, were combined with recent concepts and observations to assess the importance of soil ciliate biodiversity in ecosystem functioning. A few species typically furnish most of the individuals; increases in biodiversity, produced by less common species, alters soil ciliate communities. Soil ciliates were grouped according to position on the r/K continuum, with polyhymenophoran species as K, and colpodids as r organisms; and according to degree of soil affinity. Grasslands and hardwood forests were characterized by large numbers of K and intermediate species, whereas pine forests and more stressed ecosystems (e.g., arable lands, deserts) had more colpodid and fewer total species. Within these systems, certain species may become prominent, or be absent, suggesting that many soil ciliates exhibit widely overlapping niches, and that while a soil might function with a few species, high diversity allows systems to respond to changing seasons and climate.     

Notes on the soil ciliate biota (Protozoa, Ciliophora) from the Shimba Hills in Kenya (Africa): diversity and description of three new genera and ten new species

A very diverse ciliate community was found in nine soil samples from the Shimba Hills Nature Reserve in Kenya, equatorial Africa. The ciliates, respectively, their resting cysts, were re-activated from air-dried samples using the non-flooded Petri dish method. Species were determined from life and by silver impregnation. 34 (27%) of the 125 taxa identified had not yet been described in 1985, when the samples were collected and investigated. The richest samples, each containing 59 species, were those from a deciduous primary forest and a young secondary pine forest. The most remarkable species discovered in the Shimba Hills were Krassniggia auxiliaris, Bresslauides terricola, Gigantothrix herzogi, and Afrothrix darbyshirei. They are flagships with a very distinct morphology and easy to recognise due to their extraordinarily large body size. Krassniggia auxiliaris occurs also in Australia and probably has a restricted Gondwanan distribution, like some other ciliates. Bresslauides terricola was later found in soils from all main biogeographical regions, except for Antarctica. Gigantothrix herzogi and Afrothrix darbyshirei are still unique to the Shimba Hills. The following taxa are described in detail: Sikorops woronowiczae nov. gen., nov. spec., Arcuospathidium multinucleatum nov. spec., Dileptus similis Foissner, 1995, Plagiocampa bitricha nov. spec., Drepanomonas exigua exigua Penard, 1922, D. exigua bidentata nov. sspec., Parafurgasonia protectissima (Penard, 1922) nov. comb., P. terricola nov. spec., Brachyosoma brachypoda mucosa nov. sspec., Gigantothrix herzogi nov. gen., nov. spec., Afrothrix darbyshirei nov. gen., nov. spec., Oxytricha africana nov. spec., and O. elegans nov. spec.     

Spathidium seppelti foissneri nov. subspec., Spathidium simplinucleatum nov. stat., and Dileptus americanus Kahl, 1931, one new and two poorly known soil gymnostome ciliates from soils of Slovakia

The morphology and infraciliature of three soil gymnostome ciliates, Spathidium seppelti foissneri nov. subspec., Spathidium simplinucleatum nov. stat., and Dileptus americanus, collected from Slovakia, were investigated using live observation and protargol impregnation. S. seppelti foissneri is distinguished from its congeners by a combination of characters including: distinctly spatulate shape with convex oral bulge; 25 ellipsoidal, scattered macronuclear nodules; an average of 23 ciliary rows, 3 anteriorly differentiated to form a dorsal brush occupying 25% of the body length; and rod-shaped to slightly ellipsoidal extrusomes measuring about 5 x 0.5 microm. S. simplinucleatum is about 110 x 50 microm in vivo, characterized by solid, concave oral bulge, with the impression of doubled oral bulge in right side, macronuclear tortuous strand, usually 30 ciliary rows, 3 anteriorly differentiated to form a dorsal brush, and about 7 microm long rod-shaped extrusomes. S. simplinucleatum is highly variable in body size and length of monokinetidal bristle tail. Dileptus americanus is about 300 x 50 microm in vivo and differs from its congeners by a combination of characters including two macronuclear segments with a single micronucleus in between, two contractile vacuoles in dorsal side of trunk, two size types of rod-shaped extrusomes, a proboscis which occupies about 37% of body length, circular oral opening, and an average of 22 ciliary rows, of which up to 4 are differentiated to form a dorsal brush.     

Resting cyst wall glycoproteins isolated from two colpodid ciliates are glycine-rich proteins

Two glycoproteins bands isolated from the cyst wall protein pattern of two colpodid ciliates, Colpoda inflata (gp46CI) and Colpoda cucullus (gp46CC) were analysed for their amino acid composition. Both glycoproteins are very rich in glycine and have a relatively high hydrophobicity, containing additionally many leucine and alanine residues. Their high degree of similarity is both quantitative and qualitative. Compared with just two previously published reports, their amino acid compositions are similar to those found in the hydrolysed cyst wall total proteins from the ciliates C. steinii and Paraurostyla spp. The amino acid composition corroborates that they are indeed glycoproteins, because asparagine, an amino acid residue suitable for the attachment to N-acetylglucosamine by its amide group (N-glycan), is abundant in both proteins. We discuss our data in relation to other glycine-rich proteins and a comparison with amino acid composition protein databases is carried out.     

海洋浮游纤毛虫包囊的研究进展*

作为微型浮游动物的重要组成部分,海洋浮游纤毛虫是连接微食物环和经典食物链的重要中介。有些浮游纤毛虫在生活周期中会形成包囊,条件适宜时包囊会萌发,这对纤毛虫种群动态有重要的意义。目前国际上对于浮游纤毛虫生态学的研究主要集中在其营养期细胞,浮游纤毛虫包囊的研究尚少,中国还没有这方面的研究。本文对浮游纤毛虫包囊研究进展进行概述,包括包囊的形态、沉积物中包囊的丰度、包囊形成的环境因素、包囊萌发过程及环境因素对包囊萌发的影响等方面,希望对国内开展浮游纤毛虫包囊的研究有所裨益。     

Morphology and cell division of Saudithrix terricola n. gen., n. sp., a large, stichotrich ciliate from Saudi Arabia

The morphology and main ontogenetic traits of a new stichotrich ciliate, Saudithrix terricola Foissner, AL-Rasheid and Berger n. gen., n. sp., from a terrestrial habitat in Saudi Arabia were investigated using live observation, protargol impregnation, and scanning electron microscopy. Saudithrix terricola is characterized by a large (200-350 x 70-150 microm), flexible body; an adoral zone formed like a three-quarter circle; a sickle-shaped buccal lip with a widened paroral forming a cyrtohymenid pattern with the endoral; 11 frontal and frontal-ventral cirral rows (including right marginal rows) and one left marginal row covering the ventral side; two buccal cirri; six to nine transverse cirri; three dorsal kineties; and two macronuclear nodules. The resting cyst is about 85 microm across, has a smooth wall, and a fluffy mucous layer. Most cirral anlagen originate within the parental rows and are arranged side by side, the proximal portion of the adoral zone of membranelles is reorganized, and some parental dorsal bristles are maintained. Neither the morphological nor the ontogenetic data reveal the systematic position of Saudithrix within the stichotrichs. The term multicorona is introduced and describes a frontal ciliature composed of four or more cirral bows.     

The differentiation of cellular structure during encystment in the soil hypotrichous ciliate Australocirrus cf. australis (Protista,Ciliophora)

Ciliates are able to form resting cysts as a survival strategy in response to stressful environmental factors. Studies on the characteristics of cellular structure during encystment may provide useful information for further understanding of the regulatory mechanism of cellular patterns and supply new clues regarding the phylogeny of ciliates. Scanning and transmission electron microscopies were used to observe the ultrastructure of cells during encystment of the soil ciliate Australocirrus cf. australis. The dedifferentiation of ciliature was revealed for the first time. Ciliary shafts first shortened, and the remaining ciliature, including basal bodies and the fibrillar cirral basket, retracted into the cytoplasm and was surrounded by the autophagic vacuoles and then gradually digested. A large number of autophagic vacuoles were observed in mature resting cysts. Autophagy might not only be necessary for the differentiation of cellular structures during encystment but might also be important to sustain the basic life activities in the resting stage. Australocirrus cf. australis formed a kinetosome-resorbing cyst and contained four layers in the cyst wall: the ectocyst, mesocyst, endocyst and granular layer. The ciliature resorbing state and the number of layers in the cyst wall were consistent with those found in other oxytrichous ciliates. However, the phenomenon wherein the two macronuclear nodules are not fused during encystment is not commonly observed among oxytrichids. Additionally, the octahedral granules in the mesocyst of this species exhibit different morphology from the congeners.     

Morphology and Molecular Phylogeny of Two New Marine Euplotids,Pseudodiophrys nigricans n. g., n. sp., and Paradiophrys zhangi n. sp. (Ciliophora: Euplotida)

ABSTRACT. The morphology, infraciliature, and molecular phylogeny of Pseudodiophrys nigricans n. g., n. sp., and Paradiophrys zhangi n. sp., isolated from a sandy beach near Qingdao, China, were investigated. Pseudodiophrys is characterized by the Diophrys‐like ciliature pattern, but having only a single, reduced undulating membrane. Pseudodiophrys nigricans, the type species by monotypy, is described from live and silver‐impregnated specimens. Paradiophrys zhangi is similar to the type species Paradiophrys irmgard but can be recognized by its border body and the number (7 vs. 8–10) and arrangement (in rows vs. sparsely distributed) of the frontoventral cirri. Small subunit (SSU) rRNA gene sequence data support the validity of both species. Phylogenetic analyses based on the SSU rRNA gene sequence data currently available for uronychiids and other related taxa indicate that P. nigricans is most closely related to Diophrys scutum and Diophrys apoligothrix, while P. zhangi clusters most closely with Apodiophrys ovalis within a clade that also includes two other Paradiophrys species.     

Morphology and Phylogeny of Two Novel Ciliates,Arcanisutura chongmingensis n. gen., n. sp. and Naxella paralucida n. sp. from Shanghai,China

The morphologies of two novel ciliates, Arcanisutura chongmingensis n. gen., n. sp. and Naxella paralucida n. sp., collected from Shanghai, China, have been investigated using live observation and silver staining methods. Arcanisutura n. gen. can be easily distinguished from related genera by its inconspicuous, oblique anterior suture. Arcanisutura chongmingensis n. sp. is mainly recognized by its elongated body with a tail‐like posterior end, 25–33 somatic kineties, and 4–11 excretory pores. Naxella paralucida n. sp. can be distinguished from its congeners based on its two short nassulid organelles, fusiform trichocysts, 37–49 somatic kineties, and 16 nematodesmal rods. The small‐subunit (SSU) rRNA gene sequences of these two species are presented, revealing the phylogenetic positions of Arcanisutura and Naxella. Phylogenetic analyses show that Arcanisutura forms a sister clade to other synhymeniid genera, namely, Chilodontopsis, Orthodonella, and Zosterodasys; Naxella is most closely related to Nassula spp. and is located within the monophyletic clade of the family Nassulidae.     

Morphology and Phylogeny of Two New Pleurostomatid Ciliates,Epiphyllum shenzhenense n. sp. and Loxophyllum spirellum n. sp. (Protozoa,Ciliophora) from A Mangrove Wetland,South China

ABSTRACT. The morphology, infraciliature, and small subunit (SSU) rRNA gene sequences of two new pleurostomatid ciliates, Epiphyllum shenzhenense n. sp. and Loxophyllum spirellum n. sp., isolated from a mangrove wetland near Shenzhen, South China, were investigated. Epiphyllum shenzhenense n. sp. is morphologically characterized by leaf‐shaped cell about 150 × 35 μm in vivo, usually with four contractile vacuoles, 20–29 right kineties and 10–26 left kineties, ca. four macronuclear nodules, and two types of extrusomes (i.e. short spindle‐shaped and long bar‐shaped). As a new species, L. spirellum n. sp. is distinguished from its congeners by its posterior dorsal margin twisted onto the left side, the distribution of extrusomes (evenly arranged along the oral slit, the posterior end, and clustered to 7–13 warts on dorsal margin), the subterminally positioned contractile vacuole, the number of kineties (8–10 on right side, 4–5 on left side), and its genetic distance from congeners. Phylogenetic trees based on the SSU rRNA gene sequence for both organisms were constructed, which indicate that Epiphyllum is a distinct genus and occupies a basal position in the Pleurostomatida clade; L. spirellum n. sp. falls well into the Loxophyllum clade, which has a close relationship with Litonotus and Spiroloxophyllum.     

Morphological and Molecular Description of Three New Species of the Cyrtophorid Genus Chlamydodon (Ciliophora,Cyrtophoria)

This study investigates the morphology and molecular characteristics of three new cyrtophorid ciliates isolated from China seas: Chlamydodon salinus n. sp., Chlamydodon caudatus n. sp., and Chlamydodon paramnemosyne n. sp. Of these, C. salinus n. sp. differs from its congeners through a combination of body size, a cross‐striated band that is not continuous, the presence of 30–34 somatic kineties, 11–15 nematodesmal rods, and 13 contractile vacuoles. Chlamydodon caudatus n. sp., meanwhile, is characterized by having a conspicuous tail, a continuous cross‐striated band, 34–40 somatic kineties, about 15 contractile vacuoles, and 20–24 nematodesmal rods. Compared with other Chlamydodon species, the third new one, C. paramnemosyne n. sp., could be identified by its continuous cross‐striated band, 16–18 somatic kineties, 5 contractile vacuoles, and 9–12 nematodesmal rods. Based on the sequence of the small subunit (SSU) rRNA gene, the phylogeny of these three new species was analyzed, indicating that they all clustered with other congeners to form a monophyletic assemblage. Based on previous studies and the present work, a brief revision of the genus Chlamydodon is supplied, and a key to aid the identification of Chlamydodon species is given.     

Two Gonostomatid Ciliates from the Soil of Lombardia,Italy; including Note on the Soil Mapping Project

Two gonostomatid ciliates, Gonostomum paronense n. sp. and G. strenuum, isolated from the soil sample of paddy field, Lombardia, Italy, were investigated using live observation and protargol impregnation. Gonostomum paronense n. sp. is mainly characterized by a tailed body, frontoventral cirri arranged in pairs, and presence of pretransverse and transverse cirri. Morphologically and morphometrically, the new species is similar to Gonostomum namibiense in having a tailed body and frontoventral cirral pairs; however, it differs mainly in the number of frontoventral cirral pairs (seven vs. three). Phylogenetic analyses based on the SSU rDNA sequences show that the new species is more closely related to G. namibiense than to G. strenuum, supporting the morphological classification based on the cirral pattern and the tailed body. However, due to the poor nodal support and absence of gene sequence of the type species Gonostomum, a more robust phylogeny of this group still remains unresolved. The biometric data of the Italian population of Gonostomum strenuum overlap with those from other known populations. Both species were collected from the industrial area of Parona, in the framework of the “Soil Mapping, Lombardia” project in which, for the first time in Italy, soil ciliates were used as bioindicators of soil quality.     

Description of Two New, Mycophagous Soil Ciliates (Ciliophora, Colpodea): Fungiphrya strobli n. g., n. sp. and Grossglockneria ovata n. sp.

ABSTRACT The morphology and infraciliature of two new, mycophagous soil ciliates are described. Specimens were isolated from dried, rewetted soil samples with the non-flooded Petri dish method and investigated in vivo and with various silver impregnation techniques. Fungiphrya strobli n. g., n. sp. was discovered in the mud of rock-pools on the summit of Table Mountain, Republic of South Africa. It is a holotrichously ciliated, about 50 × 40 μm-sized grossglockneriid with the oral apparatus on the right side of the cell. The adoral ciliature, minute in all other members of the group, is well developed and has a mean of eight kineties forming a conspicuous left, oral polykinetid, highly reminiscent of that found in small species of the genus Colpoda . The ejected extrusomes have a unique, inflated distal end. Grossglockneria ovata n. sp. was discovered in leaf litter from the Lackawanna State Forest in Pennsylvania, USA. It differs from the other members of the genus by the ovate shape, smooth cortex, and the sparse, irregularly-shaped mucocysts. Taxonomic characters and ranking of grossglockneriids are discussed. Because of the complex, unique feeding tube associated with a unique feeding strategy, mycophagy, it is argued that grossglockneriid ciliates should be classified in a separate order, in spite of their close genetic relatedness to members of the order Colpodida.     

Taxonomic characterization of two marine peritrichous ciliates, Epicarchesium corlissi n. sp. and Pseudovorticella jiangi n. sp. (Ciliophora: Peritrichia), from northern China

Two new marine peritrich ciliates, Epicarchesium corlissi n. sp. and Pseudovorticella jiangi n. sp., were discovered in mariculture waters on the coast of northern China near Qingdao. Their morphology, infraciliature and silverline system were investigated based on both living and silver-impregnated specimens. E. corlissi is characterized as follows: marine Epicarchesium with dichotomously branched stalk; zooids elongate, approximately 60–70×25–35 μm in vivo; peristomial collar double-folded; macronucleus J-shaped; single, small contractile vacuole ventrally positioned; more than 60 striations between peristome and aboral trochal band, 13–18 from aboral trochal band to scopula; abstomal end of row 1 of infundibular polykinety 3 terminating at same level as rows 2 and 3 of infundibular polykinety 3; rows 2 and 3 of infundibular polykinety 3 much longer than row 1 and converging adstomally with infundibular polykinety 1. The new species P. jiangi is diagnosed as follows: marine Pseudovorticella; zooid inverted bell-shaped, approximately 80×60 μm in vivo and with a broad, flat, thin peristomial collar that measures approximately 90 μm across; pellicle with transparent cortical vesicles; macronucleus J-shaped; number of silverlines between peristome and aboral trochal band 20–24, from aboral trochal band to scopula 9–11; abstomal end of row 1 of infundibular polykinety 3 diverges from the other two rows of this polykinety and ends alongside row 3 of infundibular polykinety 2.     

Morphology,Morphogenesis, and Molecular Phylogeny of Paraparentocirrus sibillinensis n. gen., n. sp., a “Stylonychine Oxytrichidae” (Ciliophora,Hypotrichida) Without Transverse Cirri

A terrestrial oxytrichid ciliate Paraparentocirrus sibillinensis n. gen., n. sp., which was found in soil samples of a beech forest stand within the National Park of Sibillini Mountains, Italy, was investigated using live observation and protargol impregnation. The morphology of interphase, morphogenesis, and molecular phylogeny inferred from SSU rDNA sequences of this ciliate were studied. Paraparentocirrus n. gen., is mainly characterized by a semirigid body, an undulating membrane in the Oxytricha pattern, six fronto‐ventral (FV) rows, the absence of transverse cirri, one right and one left row of marginal cirri, four dorsal kineties, two dorsomarginal rows, and caudal cirri at the end of dorsal kinety 4. During morphogenesis, oral primordia develop through the proliferation of basal bodies from some cirri of FV rows 4 and 5, and FV row 6 takes part in the anlagen formation of the proter. The dorsal morphogenesis was typical of oxytrichids, with simple fragmentation of dorsal kinety 3, and the dorsomarginal rows developed from the right marginal row. Phylogenetic analyses based on the SSU rDNA sequences support the classification of this new genus in the stylonychines.     

Ultrastructure of Prorodon (Ciliophora, Prostomatida) Ii. Oral Cortex and Phylogenetic Conclusions

ABSTRACT. The ultrastructure of the oral region and the ultrastructural architecture of the basket of Prorodon aklitolophon and Prorodon teres are described. the oral region of Prorodon consists of: 1) A circumoral kinety at the anterior pole of the cell surrounding the typically slit-shaped cytostomial funnel. This kinety is composed of inversely oriented dikinetids in which both kinetosomes are ciliated and are associated with a very short postciliary microtubular ribbon and a few transverse microtubules; 2) Three brush rows aligned in parallel and extended meridionally in the anterior part of the cell. the individual brush rows consist of dikinetids, but in contrast to the dikinetids around the cytopharynx they are not inverted and only the anterior kinetosomes bear specialized short brush cilia and are associated with a divergent-tangential transverse microtubular ribbon. the posterior kinetosome is non-ciliated and bears a prominent convergent postciliary microtubular ribbon. Schematized dikinetid patterns of both oral regions of Prorodon are provided. In addition, a three-dimensional reconstruction of the basket of the genus Prorodon based on serial thin sections is presented. A phylogenetic tree, mainly based on stomatogenic data, is given to show the phylogenetic relationships of some prostomatid genera as well as the hypothesized sistergroup relationship of colpodid and prostomatid ciliates.     

Karyotypic Variability in Ribosomal DNA Subchromosome Size among Colpodid Ciliates, a Possible Tool To Differentiate Colpodid Species

Pulsed-field gel electrophoresis has been applied to analyze the karyotypic variability among colpodid ciliates. The 18S ribosomal gene was found at different locations in the electrophoretic pattern, and these size variations in the ribosomal DNA subchromosomal molecule seem to be species specific. This could potentially be a useful new tool with which to differentiate colpodid ciliates.     

Direct and indirect impact of two common rotifer species (Keratella spp.) on two abundant ciliate species (Urotricha furcata, Balanion planctonicum)

1. We investigated the potential competition and feeding impact of the common rotifer species, Keratella cochlearis and K. quadrata , on the abundant prostomatid ciliates, Urotricha furcata and Balanion planctonicum, in laboratory batch culture experiments. All four species have similar feeding preferences, co-occur in many freshwater environments, and are thus potential competitors for the same algal food.
2. Two small Cryptomonas species served as food for the ciliates and the rotifers in the experiments. Growth rates of each ciliate species were measured when they grew alone and when they were paired with one of the rotifer species.
3. Both rotifer species reduced the growth rate of U. furcata , probably primarily by direct feeding on the ciliates. Growth rate of B. planctonicum was unaffected by K. cochlearis , but was drastically reduced by grazing and/or mechanical interference of K. quadrata .
4. These results suggest niche partitioning of the sympatric ciliates with respect to their rotifer competitors/predators.