东祁连山退化高寒草地土壤细菌群落与土壤环境因子间的相互关系

为探究东祁连山不同退化高寒草地细菌群落分布特征与土壤环境因子间的相互关系,采用高通量测序技术对轻度、中度和重度退化草地的土壤细菌群落结构变化及其多样性进行分析,运用CANOCO 4.5软件对土壤细菌群落与土壤环境因子间关系进行冗余分析(RDA).结果表明:不同退化高寒草地土壤理化性质间均差异显著,高通量测序共得到257125条有效序列,180826条优质序列,4790个OTUs.细菌群落Chao1指数依次为轻度>中度>重度;Shannon指数依次为轻度>重度>中度.系统发育分析表明,各样地土壤细菌类群分属于33个门,其中放线菌门、变形菌门和厚壁菌门是3种不同退化草地土壤中的优势类群.对不同退化草地土壤细菌各门所占比例分析发现,放线菌门、酸杆菌门和变形菌门随着退化程度加剧先减少后增加,厚壁菌门反之.RDA分析结果显示,细菌优势类群与蔗糖酶、纤维素酶和磷酸酶呈极显著相关,与pH、电导率、速效氮、速效钾呈显著相关.说明东祁连山不同退化高寒草地土壤细菌群落间差异明显,土壤环境因子是影响土壤细菌群落分布的重要因素.     

土壤细菌群落特征对高寒草甸退化的响应

为明确高寒草甸土壤细菌物种组成及功能结构对草地环境恶化的响应规律, 本文采用高通量基因测序技术对高寒草甸未退化、轻度退化、中度退化、重度退化和极重度退化草地土壤细菌的组成、格局和功能进行了研究。结果表明: 高寒草甸土壤优势细菌为酸杆菌门、放线菌门、浮霉菌门、变形菌门和疣微菌门, 在土壤细菌中占比分别为16%‒18%、9%‒12%、12%‒14%、23%‒29%和11%‒12%。退化草地中土壤细菌物种组成明显改变, 变形菌门细菌丰度降低, 酸杆菌门和浮霉菌门丰度增加, 不同草地科水平细菌丰度差异因土层而异。草地退化对细菌Chao1指数无影响, 轻度退化提高了细菌Simpson指数, 重度退化草地土壤细菌Shannon-Wiener指数最高。Faprotax细菌功能分组以化能异养、硝化作用、亚硝酸盐氧化及硫代谢作用为主, 草地退化改变了微生物介导的碳循环、氮循环、硫循环、铁循环和锰循环。重度及极重度退化提高了细菌氨氧化功能作用, 降低了硫化物、亚硝酸盐氧化及尿素水解作用; 草地退化过程中细菌化能异养、芳香族化合物降解及反硝化作用功能等均呈先降低后升高的变化趋势, 中度退化阶段是微生物群落生态功能结构转变的拐点。高寒草甸退化改变了土壤细菌的群落及功能结构, 土壤含水量、pH、总有机碳、全氮、全钾和有效氮磷比是土壤细菌群落及功能结构变化的主要驱动因子。     

内蒙古退化荒漠草原土壤有机碳和微生物生物量碳含量的季节变化

为探明荒漠草原土壤有机碳（SOC）和微生物生物量碳（MBC）含量特征,分别在内蒙古达茂旗、四子王旗和苏尼特右旗设置样地,依次代表轻度、中度和重度退化草地,分析了不同样地表层土壤(0～20 cm)SOC和MBC含量变化及季节动态.结果表明：退化草地SOC和MBC含量均随草地退化程度增加而减小;除2006年夏季外,轻度、中度退化荒漠草地的土壤可培养微生物总数都高于重度退化荒漠草地;MBC含量和土壤可培养微生物总数均在夏秋季较高,春冬季较低.相关分析结果显示,SOC含量与MBC含量之间呈极显著正相关（P<0.01）,说明两者均可作为评价荒漠草原草地退化的敏感指标.     

退化高寒草地土壤真菌群落与土壤环境因子间相互关系

【目的】为探究祁连山高寒草地退化过程中土壤真菌群落分布特征与土壤环境因子间的相互关系。【方法】利用Illumina Miseq PE250高通量测序技术对轻度、中度和重度退化草地土壤真菌群落结构变化及其多样性进行分析,并对土壤真菌群落与土壤环境因子的相互关系进行冗余分析(RDA)。【结果】随着退化程度加剧,土壤pH呈现出升高趋势,电导率呈现出先升高后降低趋势,土壤含水量、有机碳、全氮、全磷和全钾含量均逐渐降低。高通量测序共得到750575条有效序列和5788个OTUs;各试验点样地中真菌群落Chao1指数和Shannon-Wiener指数变化各异。在门分类水平上,子囊菌门(Ascomycota)、担子菌门(Basidiomycota)、接合菌门(Zygomycota)、球囊菌门(Glomeromycota)和壶菌门(Chytridiomycota)是各草地土壤的优势类群。RDA分析表明,土壤速效钾、全氮、速效氮和有机碳是祁连山不同退化高寒草地土壤真菌群落分布的主要驱动因子。【结论】祁连山不同退化高寒草地土壤真菌群落间差异明显,土壤环境因子是影响土壤真菌群落分布的重要因素。     

呼伦贝尔草原不同退化梯度土壤细菌多样性季节变化

为了研究草地退化程度与土壤微生物多样性的关系,在呼伦贝尔草地上选取羊草草甸草原和贝加尔针茅草甸草原两个典型放牧点,按照轻度、中度和重度划分取样点,分别于6、8月份和10月份3个不同季节采集土壤样品。应用变性梯度凝胶电泳技术(PCR-DGGE)研究两个放牧地点不同退化程度、不同季节草地的细菌群落结构变化。结果表明,呼伦贝尔草地不同退化梯度的草地土壤中细菌种类较为丰富。从丰富度和Shannon-Winner指数的变化看,两个放牧点8月份丰富度和Shannon-Winner指数最高,8月份的丰富度平均为32.4,比6月和10月份分别高11%和7.4%;8月份Shannon-Winner指数平均为4.15,比6月和10月份分别高7.7%和5.4%。DGGE图谱聚类分析结果显示,随着季节变化和草地退化程度由轻至重的变化,土壤中的细菌优势种群没有受到明显的影响。回收DGGE图谱中10个条带进行测序分析,结果显示,所有序列与GenBank数据库中的相似度在87%100%之间。基于98%的相似度,可将其中的7个鉴定为Proteobacteria(变形菌门),将其中的1个鉴定为Actinobacteria(放线菌门)。另外2个同已知序列相似性较低,可能是未知的细菌。结果表明,Proteobacteria(变形菌门)为呼伦贝尔草原土壤中的优势细菌类群,尽管所选取样点草地植被有不同程度的退化,但土壤微生物优势种群并没有发生变化。     

不同退化阶段亚高山草甸土壤原生生物群落多样性特征及驱动因素

原生生物在草地生态系统养分循环、微生物群落稳定和土壤肥力维持方面发挥着重要作用。为了揭示亚高山草甸退化过程中土壤原生生物群落组成和多样性变化格局及环境驱动机制,本文利用18Sr DNA高通量测序技术研究了五台山不同退化阶段(未退化(nondegraded, ND)、轻度(lightly degraded, LD)、中度(moderately degraded, MD)和重度退化(heavily degraded,HD))亚高山草甸土壤原生生物群落组成和多样性的变化特征。结果表明:丝足门、褐藻门、纤毛门、叶足亚门、锥足亚门、绿藻门和顶复门是亚高山草甸土壤原生生物的优势门(相对丰度>1%)。纤毛门、叶足亚门、绿藻门、Choanoflagellida和Perkinsea的相对丰度在4种不同退化程度草甸中存在显著差异(P<0.05)。LEfSe分析显示未退化草甸中主要富集了Perkinsea类群,轻度退化草甸中富集了盾纤目类群,中度退化草甸中富集了变形虫纲和卵菌纲类群,中度退化草甸中主要富集了绿藻纲和硅藻纲类群等光合自养原生生物。随着亚高山草甸退化加剧,土壤原生生物群落α多样性呈下...     

放牧对贝加尔针茅草原土壤细菌群落结构的影响

利用变性梯度凝胶电泳(PCR-DGGE)技术,研究了放牧对贝加尔针茅(Stipa baicalensis)草原土壤细菌群落结构的影响。结果表明,放牧条件下,贝加尔针茅草原0～20cm土壤中细菌类群包括变形菌门(Proteobacteria)的α、β、γ、δ变形菌纲,放线菌门(Actinobacteria)、芽单胞菌门(Gemmatimonadetes)、绿弯菌门(Chloroflexi)、厚壁菌门(Firmicutes)、酸杆菌门(Acidobacteria)、疣微菌门(Verrucomicrobia)、拟杆菌门(Bacteroidetes)、硝化螺旋菌门(Nitrospirae)等,其中变形菌门、放线菌门属优势类群,疣微菌门细菌是中度放牧样地仅有的类群;典型对应分析表明,土壤细菌群落与放牧强度、土壤理化性状密切相关。轻度放牧样地土壤细菌群落与有机碳、C/N比有较为密切的关系,中度放牧样地土壤细菌群落则与全N有较密切的关系,重度放牧样地土壤细菌群落与土壤pH有关。     

放牧强度对短花针茅荒漠草原甲虫群落分布格局的影响

放牧对脆弱的荒漠草原生态系统有着重要影响,且随放牧强度及持续时间不同而变化。鞘翅目昆虫是环境监测与生物多样性变化的指示生物。利用巴氏罐诱法对短花针茅荒漠草原不同放牧强度草地的甲虫群落组成和多样性进行调查,探究放牧对荒漠草原甲虫群落的影响。结果表明:(1)步甲科、金龟科为短花针茅荒漠草原甲虫群落优势类群,埋葬甲科、芫菁科、拟步甲科和花金龟科为常见类群。(2)放牧强度增加不利于维持更多的捕食性甲虫;对照和轻度放牧样地可维持更多的腐食性甲虫。(3)甲虫数量随放牧强度增加而递减;群落多样性以重度放牧草地最大,轻度放牧草地最小;群落优势度为对照、中度、重度显著高于轻度放牧草地。各甲虫类群在不同放牧强度草地出现时间、高峰期均不同。(4)对照、轻度、重度放牧样地的甲虫优势类群群落结构不同于其他生境,但均与中度放牧样地存在相似性。轻度、中度、重度放牧样地的甲虫稀有类群群落结构不同于其他生境,但均与对照样地存在相似性。(5)甲虫群落个体数与植物群落物种丰富度、盖度、植物平均高度、生物量呈显著正相关。Shannon-Wiener多样性指数、Margalef丰富度指数均与植物群落物种丰富度、生物量显著负相关。研究结果为荒漠草原甲虫多样性保护提供参考依据。     

三江源区退化高寒草甸土壤真菌群落特征

为了明确高寒草甸退化演替过程中土壤真菌物种组成、群落多样性及功能结构等的响应规律,本研究采用高通量基因测序技术和FUNGuild功能预测,分析了三江源区未退化、轻度退化、中度退化、重度退化和极度退化高寒草甸土壤真菌群落特征及其调控因子。结果表明: 高寒草甸土壤优势真菌为子囊菌门、担子菌门和被孢霉菌门。与未退化草地土壤相比,退化草地土壤真菌物种组成发生明显改变,草地退化后扇形枝孢菌、粉褶菌、锥形湿伞、丝盖伞菌和短梗蠕孢真菌丰度减少,三线镰孢菌和Dactylonectria macrodidyma真菌丰度增加。重度退化增加了土壤真菌Chao1指数,轻度退化则显著降低了真菌Shannon指数和Simpson指数。不同草地的病理型、共生型和腐生型真菌丰度均表现出显著差异;草地退化后土壤中的共生型真菌丰度减少,病理型真菌丰度增加。高寒草甸退化导致土壤真菌格局和功能发生明显改变,地上生物量、土壤含水量、pH、总有机碳、全氮、铵态氮、有效磷和全钾含量及有效氮磷比是改变真菌群落结构的主要驱动因子。     

青藏高原高寒草甸群落特征和代表性植物生存状态对草地退化的响应

植物群落和代表性植物的生存状态是反映草地退化程度的重要标志之一。以青海省果洛州玛沁县的未退化、轻度退化、中度退化、重度退化和极度退化的高寒草甸为研究对象,分析了植物群落特征、代表性植物地上性状及生存状态对退化程度的响应。结果表明:群落物种组成由禾本科、莎草科过渡到杂类草,Shannon多样性指数、Simpson优势度指数、Pielou均匀度指数先平稳变化后降低,群落平均高度、Patrick丰富度均先增加后降低,群落盖度依次降低,群落特征指标均在极度退化时最低(P<0.05);总体来看,与轻度退化样地相比,中度退化、重度退化和极度退化样地的植物株高均显著降低,分别降低了6.8%、36.8%和31.6%(P<0.05);生存状态指数表现为小嵩草(Kobresia pygmaea)逐渐降低,山地早熟禾(Poa orinosa)和垂穗披碱草(Elymus nutans)的生存状态指数分别在轻度退化和中度退化时最高,肉果草(Lancea tibetica)和黄帚橐吾(Ligularia virgaurea)的生存状态指数分别在重度退化和极度退化样地中最大。说明高寒草甸退化导致群落特征...     

Microbial Degradation of Organic Pollutants in Soil in a Cold Climate

Cold-adapted microorganisms are potentially interesting for use in environmental biotechnology applications since a large part of the biosphere has low temperatures during at least parts of the year. Many studies have shown that both oil-contaminated and uncontaminated soils in the Arctic, the Antarctic and the Alps contain microbes that can degrade different hydrocarbons deriving from oils. A few studies have also been conducted on degradation of herbicides in soils at low temperatures. Furthermore, phenols and some polychlorinated biphenyl (PCB) congeners have proved to be degradable at low temperatures, using microorganisms isolated from sediments or soils. Additions of nitrogen and phosphorous to polluted soils have been shown to enhance the degradation of hydrocarbons in many cases. Bioaugmentation with hydrocarbon degrading cold-adapted microorganisms has given varying results. The inoculated microorganisms have probably been out-competed by the indigenous microorganisms in some cases. Different ways to increase the efficiency of microbial degradation of organic pollutants in soil in a cold climate is discussed.     

Synergistic plant-microbes interactions in the rhizosphere: a potential headway for the remediation of hydrocarbon polluted soils

Soil pollution is an unavoidable evil; many crude-oil exploring communities have been identified to be the most ecologically impacted regions around the world due to hydrocarbon pollution and their concurrent health risks. Several clean-up technologies have been reported on the removal of hydrocarbons in polluted soils but most of them are either very expensive, require the integration of advanced mechanization and/or cannot be implemented in small scale. However, “Bioremediation” has been reported as an efficient, cost-effective and environment-friendly technology for clean-up of hydrocarbon”s contaminated soils. Here, we suggest the implementation of synergistic mechanism of bioremediation such as the use of rhizosphere mechanism which involves the actions of plant and microorganisms, which involves the exploitation of plant and microorganisms for effective and speedy remediation of hydrocarbon”s contaminated soils. In this mechanism, plant”s action is synergized with the soil microorganisms through the root rhizosphere to promote soil remediation. The microorganisms benefit from the root metabolites (exudates) and the plant in turn benefits from the microbial recycling/solubilizing of mineral nutrients. Harnessing the abilities of plants and microorganisms is a potential headway for cost-effective clean-up of hydrocarbon”s polluted sites; such technology could be very important in countries with great oil producing activities/records over many years but still developing.     

Effects of microorganism on carbon,nitrogen and phosphorus of Dodonaea viscosa and the soils from different elevations in Yuanmou,Yunnan, China北大核心CSCD

Aims Understanding the effects of soil microorganism at different elevations on plant C:N:P stoichiometry can help us to understand the plant-soil interactions in the context of climate change. Our aim was to quantify the independent and interactive effects of soil microbial communities and temperatures on the C, N, and P in the leaves of Dodonaea viscosa-a global widespread species. Methods Rhizosphere soils of D. viscosa were collected from two elevation zones in Yuanmou County, Yunnan Province. A 2 × 3 factorial experiment with six replications was conducted using climate chambers. The leaf C, N and P contents and the soil properties were measured after three months of the treatments. Important findings Compared with the autoclaved treatment, inoculated rhizosphere soils from both high and low elevations had higher nutrient absorption, especially P uptake. Temperature produced no significant effect on leaf C:N:P stoichiometry, but the interactive effect of temperature and microbial treatment appeared significant. For inoculated rhizosphere soils from high elevation, temperature had no significant effect on leaf C:N:P stoichiometry. For inoculated rhizosphere soils from low elevation, leaf N and P contents under low temperature were significantly lower than those with warmer soils. The promoting effect of soil microorganisms on nutrient uptake may be due to the direct effect of beneficial microorganisms (e.g., mycorrhizal fungi), but not through the alteration of nutrient cycling process. Because D. viscosa in the inoculated rhizosphere soils absorbed more N and P from the soil than those in autoclaved soil, the available N and P in inoculated rhizosphere soils were lower than those in autoclaved soils. As predicted future temperature will be lower in the studied region, the growth of D. viscosa may be negatively affected through plant-microbe feedbacks.     

Impact of radioactive elements on microbial complexes in cryogenic soils of Yakutia

It has been found that microorganisms in cryogenic soils of Yakutia are resistant to the long-term impact of cesium and thorium. The number of microorganisms in the studied ecological–trophic groups does not depend on the concentrations of radioactive elements. Differences in the number of microorganisms are determined by the physicochemical conditions that are created in different horizons of the soils studied. The long-term impact of radiation (for 36 and 66 years) on microorganisms inhabiting the permafrost soils of Yakutia has developed their adaptive capacity to high concentrations of these radioactive elements.     

Effects of microorganism on carbon,nitrogen and phosphorus of Dodonaea viscosa and the soils from different elevations in Yuanmou,Yunnan, China

Aims Understanding the effects of soil microorganism at different elevations on plant C:N:P stoichiometry can help us to understand the plant-soil interactions in the context of climate change. Our aim was to quantify the independent and interactive effects of soil microbial communities and temperatures on the C, N, and P in the leaves of Dodonaea viscosa—a global widespread species. Methods Rhizosphere soils of D. viscosa were collected from two elevation zones in Yuanmou County, Yunnan Province. A 2 × 3 factorial experiment with six replications was conducted using climate chambers. The leaf C, N and P contents and the soil properties were measured after three months of the treatments. Important findings Compared with the autoclaved treatment, inoculated rhizosphere soils from both high and low elevations had higher nutrient absorption, especially P uptake. Temperature produced no significant effect on leaf C:N:P stoichiometry, but the interactive effect of temperature and microbial treatment appeared significant. For inoculated rhizosphere soils from high elevation, temperature had no significant effect on leaf C:N:P stoichiometry. For inoculated rhizosphere soils from low elevation, leaf N and P contents under low temperature were significantly lower than those with warmer soils. The promoting effect of soil microorganisms on nutrient uptake may be due to the direct effect of beneficial microorganisms (e.g., mycorrhizal fungi), but not through the alteration of nutrient cycling process. Because D. viscosa in the inoculated rhizosphere soils absorbed more N and P from the soil than those in autoclaved soil, the available N and P in inoculated rhizosphere soils were lower than those in autoclaved soils. As predicted future temperature will be lower in the studied region, the growth of D. viscosa may be negatively affected through plant-microbe feedbacks.     

Construction and behavior of biologically contained bacteria for environmental applications in bioremediation.

The survival of microorganisms can be predicted through the use of active biological containment systems. We have constructed contained Pseudomonas putida strains that degrade alkylbenzoates. The modified strain carries a fusion of the Plac promoter to the gef gene, which encodes a killing protein. Expression from Plac is controlled through a regulatory cascade, so that Plac is switched on or off by the absence or presence of alkylbenzoates, respectively. Similar uncontained strains were also constructed and tested as a control. Contained and uncontained strains were genetically stable, and their survival and functionality in soil microcosms were as expected. Both contained and uncontained strains survived well in soils supplemented with alkylaromatics, whereas survival of the contained strain in soil microcosms without methylbenzoates was markedly reduced, in contrast to the control strain, which survived in these soils in the absence of alkylbenzoates. The TOL plasmid was transferred in soils between Pseudomonas strains but was not able to mobilize the elements of the containment system.     

解磷微生物修复土壤重金属污染研究进展

土壤重金属污染问题日益严重,具有普遍性、隐蔽性、表聚性、不可逆性等特点,已经成为环境污染治理中的热点、难点问题。解磷微生物能够依靠自身的代谢产物或通过与其他生物的协同作用,将土壤中的难溶性磷转化为可供植物吸收利用的磷,具有多重植物促生长功能和重金属解毒能力,可在重金属毒害水平下,促进植物生长、提高植物抗病能力、克服重金属对植物生长的不利影响,从而增强重金属修复植物的生存竞争力。从解磷微生物的研究现状入手,介绍了解磷微生物对土壤重金属污染的修复能力,综述了解磷微生物对土壤重金属污染修复的作用机制,分析了目前解磷微生物在重金属修复过程中存在的问题,并提出了今后研究的方向,为重金属污染土壤的修复提供了新思路。     

获取有机物厌氧降解产甲烷过程中关键功能类群——互营细菌培养物

互营代谢是微生物之间的重要种间互作关系之一,参与互营代谢的微生物广泛存在于土壤、淡水和海水沉积物、厌氧消化反应器、动物肠道和极端环境中(如地下油藏),在有机物厌氧降解转化为二氧化碳和甲烷的过程中发挥着关键性的作用。研究互营细菌的物质代谢和能量传递的分子机制,对认识缺氧环境中的元素生物地球化学循环具有重要意义,也为解决全球能源危机、缓解气候变暖提供理论指导。但是,互营细菌生长缓慢、对氧气敏感,其分离培养的难度大。本文主要回顾了互营细菌的分离策略及其生理生化特征,展望了互营细菌分离培养的发展趋势,并指出以高通量筛选与定向分离相结合的方法,获得具有特定生理生态学功能的互营细菌,是互营微生物资源和分类学研究的发展方向。     

Biodegradation of phenanthrene by indigenous microorganisms in soils from Livingstone Island, Antarctica

Biodegradation of polycyclic aromatic hydrocarbons (PAHs) in soils has been linked to history of exposure to PAHs and prevailing environmental conditions. This work assessed the capacity of indigenous microorganisms in soils collected in Livingstone Island (South Shetlands Islands, Antarctica) with no history of pollution (∑PAHs: 0.14-1.47?ng?g(-1) dw) to degrade (14) C-phenanhthrene at 4, 12 and 22?°C. The study provides evidence of the presence of phenanthrene-degrading microorganisms in all studied soils. Generally, the percentage of (14) C-phenanhthrene mineralized increased with increasing temperature. The highest extent of (14) C-phenanhthrene mineralization (47.93%) was observed in the slurried system at 22?°C. This work supports findings of the presence of PAH-degrading microorganisms in uncontaminated soils and suggests the case is the same for uncontaminated Antarctic remote soils.     

Effect of hydrogen peroxide and hydrated ferric oxides on the metabolism of soil microflora

The effect of hydrogen peroxide and the mineral limonite on the rate of microbial processes was studied in poor and rich soils. The dynamics of CO2 evolution can be registered upon addition of hydrogen peroxide to chernozem samples, which confirms the existence of metabolism of soil microorganisms. In experiments with desert soil, the evolution of O2 increases rather than that of CO2, which is probably due to an increase in the number of microorganisms producing catalase. Limonite stimulates the metabolic activity of microrganisms. The cultural and morphological properties of microflora are described, which are typical of soils incubated in the presence of limonite and hydrogen peroxide. This work supports the conclusion that, theoretically, the ground of Mars may contain microorganisms which have adapted, in the course of evolution, to high concentrations of hydrogen peroxide and hydrated iron oxides (of the limonite type) in the surrounding medium.