云南烟叶中苏云金杆菌的分布及杀虫特性

采用4%NaCl培养基选择分离法,从云南7个生产烟区采集的450个复烤烟样中,分离出苏云金芽孢杆菌475株。分离出的Bt菌进行PCR毒素蛋白基因鉴定,其中含cryI毒素蛋白基因的Bt菌有7株,出菌率为1.47%;含cryV毒素蛋白基因的Bt菌11株,出菌率为2.32%;没有含cryⅢ毒素蛋白基因的Bt菌。对含毒蛋白基因cryⅠ及cryⅤ的18个Bt菌株用二龄烟草甲虫进行生物毒力测定,试验后9d有9个Bt菌件生物毒力测定校正死亡率均超过80%;试验后12d有5个Bt菌株生物毒力测定校正死亡率均超过95%。可见,用苏云金芽孢杆菌防治烟叶仓贮害虫是有潜力的。     

31株苏云金芽孢杆菌杀虫晶体蛋白基因型鉴定及表达产物研究

利用已建立的苏云金芽孢杆菌cry基因的PCRRFLP鉴定体系,鉴定了31株Bt菌株的cry基因类型,并进行了SDSPAGE分析和杀虫生物活性测定。研究表明：25株含cry1基因,表达蛋白130～150kD;其中16株含有对鞘翅目和鳞翅目害虫皆有活性的cry1I基因,其表达蛋白为81kD;15株同时含有cry1和cry2基因(13株表达蛋白约为60kD);10株含有未知待定基因;6株不含所鉴定的cry基因(其中2株有表达产物)。室内生物测定表明：cry1、cry2基因表达的菌株对鳞翅目害虫具有高杀虫活性,7株对舞毒蛾和膜翅目——杨叶蜂幼虫具有较高杀虫活性;含有cry1Aa\,cry1Ac\,cry2或cry1Ab\,cry1Ac\,cry2基因组合的菌株对棉铃虫幼虫均显示杀虫活性,其中6、12、30号菌株毒力最强。不含上述cry基因的菌株均无杀虫活性。以上结果证明,通过cry基因类型鉴定和表达产物的SDSPAGE分析可以预测菌株的杀虫活性。     

青海育成小麦5个主效矮秆基因的分子检测

为系统了解青海小麦矮秆基因的分布特点,并进一步为青海高原小麦的株高育种提供优异种质资源。本研究利用5个矮秆基因的特异性分子标记对82份青海小麦品种资源中的矮秆基因进行了检测,并对不同矮秆基因的降秆效应进行了分析。结果表明:82份青海育成小麦品种中有49份材料至少含有一个矮秆基因,其中Rht-B1b的分布频率最高,约占参试材料的28.0%,其次是分布频率为23.2%的Rht8基因,而矮秆基因Rht-D1b、Rht5以及Rht12的分布频率分别为9.8%、13.4%、9.8%。在49份含有不同种类矮秆基因的材料中,其中16份材料同时含有2种及以上的矮秆基因,即RhtB1b和Rht8、Rht-D1b和Rht8、Rht-B1b和Rht5、Rht-D1b和Rht5、Rht8和Rht5、Rht-B1b和Rht12、Rht5和Rht12,并未发现同时含有矮秆基因Rht-B1b和Rht-D1b的品种;2份材料分别含有3种矮秆基因,即Rht-B1b、Rht8、Rht12和Rht-B1b、Rht5、Rht8;其余31份材料仅含有1种矮秆基因。82份青海育成小麦材料中仅含有Rht-B1b的材料11份,平均株高为86.2 cm,其降秆效应为5.7%;只含有Rht-D1b的材料有5份,平均株高为84.9 cm,其降秆效应为7.1%;仅含有Rht8的材料有9份,平均株高为88.6 cm,其降秆效应为3.1%。因此,在青海育成小麦品种中,矮秆基因的降秆效应为Rht-D1bRht-B1bRht8。     

枯草芽孢杆菌耐盐突变株proA基因克隆及proBA基因渗透压调节功能研究

利用TaKaRaLAPCRTM试剂盒扩增枯草芽孢杆菌 931 5 1耐盐突变株proA基因的未知下游序列。根据测序结果 ,设计引物 ,克隆出发菌株和突变株全长proBA基因。将出发菌株和突变株的proBA基因分别转化大肠杆菌JM83(proBA- ) ,均能够与其功能互补。SDS PAGE分析其表达产物 ,有两条分子量分别约为 4 0kD和 4 5kD的新蛋白带出现。测定 4种转化子 (分别含有出发菌株和突变株proB基因的大肠杆菌 1 1 2 5 2转化子及proBA基因的大肠杆菌JM83转化子 )的耐盐能力。发现含有突变株proB或proBA基因转化子的耐盐能力 ,均比相应的含有出发菌株proB或proBA基因的转化子高。另外含有出发菌株和突变株的proBA基因转化子的耐盐能力 ,也均比相应的仅含proB基因的转化子高 ,表明枯草芽孢杆菌的ProA比大肠杆菌的ProA更为有效。测定所有JM83转化子胞内自由脯氨酸 ,发现其含量随盐浓度的上升而提高 ,其中含突变菌株proBA基因的转化子提高更为显著     

实时荧光定量PCR技术鉴别非O157∶H7大肠杆菌产志贺毒素菌株(STEC)的研究

本文运用实时荧光定量PCR的技术对菌株进行stx1基因、stx2基因、eaeA毒力基因检测;并对stx阳性、eaeA阳性的菌株进行O抗原基因rfbE(O157)、wzx(O26)、wbdI(O111)、ihp1(O145)、wzx(O103)检测。探究了实验室保存的94株非O157:H7大肠杆菌是否存在产志贺毒素菌株(STEC)存在;结果表明94株大肠杆菌中检出3株含有stx基因、12株含有eaeA基因;对stx和eaeA阳性菌株O抗原基因试验,检出2株含有wzx(O26)基;这2株大肠杆菌血清凝集试验结果为阳性。研究结果显示,实时荧光定量PCR技术具有特异性强,灵敏度高等特点,可用于产志贺毒素菌株(STEC)前期筛查。     

萘降解细菌的分离及其降解基因的分子检测

从污水处理厂的活性污泥和石油工业废水中各分离到24个降解萘的细菌分离株,提取这些分离株的总DNA,然后与各种萘降解基因杂交。结果表明,这2个来源的分离株在萘降解基因的种类上有明显不同。来自工业废水的分离株含有萘双加氧酶的铁硫蛋白大亚基基因nahAc,水杨醛脱氢酶基因nahF及其重复基因nahV,水杨酸羟化酶基因nahG及其重复基因nahU,儿茶酚2,3-双加氧酶基因nahH和儿茶酚1,2-双加氧酶基因catA,以及萘趋化蛋白基因nahY。来自活性污泥的分离株只含有nahAc、nahF、nahG和catA,不含有nahY、nahV、nahU和nahH。     

多年生黑麦草成熟胚再生体系的建立及基因枪转化

目的:建立以多年生黑麦草成熟胚为起始材料的再生体系,用于基因枪转化。方法:多年生黑麦草成熟种子在附加 5mg L 2,4 D的MS培养基上诱导愈伤组织,转至新继代培养基上产生胚性愈伤组织。分化培养基为无激素MS培养基。再生植株在培养基成分减半的无激素MS培养基生根,之后移栽至土壤。基于这一再生体系,用含有水稻几丁质酶基因RC2 4的质粒pARN6和含有草丁膦乙酰转移酶基因Bar的质粒pDB1,通过基因枪轰击胚性愈伤组织。用附加PPT的继代培养基进行转化植株的抗性筛选。结果:共获得 2 4 3株再生植株。通过PCR进行检测,获得1 8株整合有RC2 4基因的植株,1 5株整合有Bar基因的植株,同时转入 2个基因的植株 2株。     

苏云金杆菌cry 1C基因检测及其与杀虫活性的关系

对实验室分离保存的 5 4株苏云金芽孢杆菌的H 血清型、杀虫晶体蛋白质 ,杀虫基因cry 1C和对甜菜夜蛾的活性进行了检测 ,分析了它们之间的关系。结果表明 ,有 2 8株菌株含有cry 1C基因 ,携带有cry 1C基因的菌株的晶体蛋白质主要为 135ku左右 ,它们对甜菜夜蛾均有较高的毒性 ,这些菌株的鞭毛抗原血清型主要分布在H 5和H 7。     

蜚蠊肠道放线菌的卤化酶基因检测及初步分析

[目的]对159株蜚蠊肠道内生放线菌的卤化酶等相关基因进行检测和初步分析。[方法]活化蜚蠊肠道内生放线菌,制备各菌株基因组DNA,根据依赖黄素腺嘌呤二核苷酸FADH2的卤化酶基因保守区设计简并引物,通过PCR扩增卤化酶基因片段,TA克隆后进行测序鉴定。在此基础上,对卤化酶阳性菌株进行聚酮合酶PKSⅠ和非核糖体多肽合成酶NRPS等2个次级代谢产物生物合成主要基因进行检测。[结果]159株蜚蠊肠道放线菌有84株含有卤化酶基因,占比52.83%;卤化酶基因阳性放线菌中71株含有PKSⅠ基因,70株含有NRPS,占比分别为84.52%、83.33%。[结论]蜚蠊肠道含有较丰富的卤化酶基因阳性放线菌,可作为未来分离卤化活性物质的微生物资源。     

塔里木盆地5个生态小区稀有放线菌分离及合成抗生素基因分布

为调查塔里木盆地5个代表性生态小区的稀有放线菌分布,并评估它们产生抗生素类活性物质的潜力。采集塔里木盆地5个生态小区混合土样5份,采用7种培养基分离样品中的稀有放线菌。通过检测分析I型PKS、Ⅱ型PKS、NRPS、APH、HMG-CoA五种抗生素合成相关基因的分布,评估该地区稀有放线菌产生抗生素的潜力。结果表明:(1)基于分子鉴定,经合并重复,共分离得到18种稀有放线菌,属于放线菌的10个属。(2)塔里木河河岸林生态小区土样稀有放线菌分离种类最多(10种),为8个属,塔克拉玛干沙漠塔里木河东部生态小区最少(4种),为4个属。(3)18株稀有放线菌中有9株含有I型PKS基因、4株菌含有Ⅱ型PKS基因、4株菌含有APH基因、3株菌含有NRPS基因,有一株链孢囊菌同时含有I型PKS、Ⅱ型PKS、NRPS、APH 4种基因。5个生态小区稀有放线菌种类较多,并含有较为丰富的与抗生素合成相关的基因。     

苏云金芽胞杆菌YBT1520杀虫晶体蛋白基因的属性

通过Ｓｏｕｔｈｅｒｎ杂交发现高毒力苏云金芽胞杆菌（Ｂａｃｉｌｌｕｓ ｔｈｕｒｉｎｇｉｅｎｓｉｓ）ＴＢＴ－１５２０菌株含有两个杀虫晶体蛋白基因片段,其５’＝末端所在ＨｉｎｄⅢ片段分别为６．８ｋｂ和４．６ｋｂ,它们对应的基因分别命名为ｃｒｙ２１８和ｃｒｙ４．６。经ＰＣＲ鉴定,该菌含有ｃｒｙ１Ａａ、ｃｒｙ１Ａｂ和ｃｒｙ１Ａｃ基因,以及ｃｒｙ２基因,其中ｃｒｙ２１８属于ｃｒｙ１Ａｃ。分析了ｃｒｙ１Ａｃ基因     

汉坦病毒基因组G1区部分酶切位点的研究

用分型RT -PCR方法对 34份武汉地区肾综合征出血热患者外周血标本扩增 ,扩增的目的片段为汉坦病毒M片段G1基因部分序列 ,应用HincⅡ和SacI两种限制性内切酶消化扩增产物 ,可将汉坦病毒区分为HTN型和SEO型 ,结果与分型PCR有很高的一致性 ,并可迅速筛查在HincⅡ和SacI酶切位点有基因变异的变异株     

神农架地区濒危植物香果树的遗传多样性研究

用RAPD标记方法对神农架地区香果树4个自然居群的28个个体进行了遗传多样性分析,11个引物共得到71个扩增位点,其中多态性位点39个。POPGENE分析显示:在物种水平上,神农架地区香果树的多态性条带百分率为54.93%,Nei基因多样性指数(h)为0.1903,Shannon信息指数(I)为0.2856;而在居群水平上,上述3个指标平均值依次为16.2%、0.0578和0.0865。4个自然居群间的遗传分化程度较低,居群间的基因流(Nm)为0.2329。结果表明神农架地区香果树的遗传多样性较低,居群间基因流较低可能是香果树的致濒原因之一。     

Molecular detection of nematicidal crystalliferous Bacillus thuringiensis strains of Iran and evaluation of their toxicity on free-living and plant-parasitic nematodes

The characterization of nematode-effective strains and cry genes in the Iranian Bacillus thuringiensis (Bt) collection (70 isolates) is presented. Characterization was based on PCR analysis using 12 specific primers for cry5, cry6, cry12, cry13, cry14, and cry21 genes encoding proteins active against nematodes, crystal morphology, and protein band patterns as well as their nematicidal activity on root-knot nematode (Meloidogyne incognita) and two free-living nematodes (Chiloplacus tenuis and Acrobeloides enoplus). PCR results with primers for these genes showed that 22 isolates (31.5%) contain a minimum of one nematode-active cry gene. Strains containing the cry6 gene were the most abundant and represent 22.8% of the isolates. Bt strains harboring cry14 genes were also abundant (14.2%). cry21 and cry5 genes were less abundant, found in 4.2% and 2.8% of the strains, respectively. In total, six different nematode-active cry gene profiles were detected in this collection. Four isolates did not show the expected PCR product size for cry5, cry6, and cry21 genes; they might contain potentially novel insecticidal crystal protein genes. Twenty-two Bt isolates containing nematode-active cry genes were selected for preliminary bioassays on M. incognita. Based on these bioassays, four isolates were selected for detailed bioassays. Isolates YD5 and KON4 at 2 x 10(8) CFU/mL concentrations showed 77% and 81% toxicity on M. incognita, respectively. The free-living nematodes C. tenuis and A. enoplus were more susceptible and the highest mortality was observed within 48 h of incubation at all of the concentrations tested. Maximum mortality was recorded for isolates SN1 and KON4 at 2 x 10(8) CFU/mL concentrations and resulted in 68% and 77% adults deaths of C. tenuis and 68% and 72% for A. enoplus, respectively. Our results showed that PCR is a useful technique for toxicity prediction of nematicidal Bt isolates.     

Isolation and characterization of novel atrazine-degrading microorganisms from an agricultural soil

Six previously undescribed microorganisms capable of atrazine degradation were isolated from an agricultural soil that received repeated exposures of the commonly used herbicides atrazine and acetochlor. These isolates are all Gram-positive and group with microorganisms in the genera Nocardioides and Arthrobacter, both of which contain previously described atrazine degraders. All six isolates were capable of utilizing atrazine as a sole nitrogen source when provided with glucose as a separate carbon source. Under the culture conditions used, none of the isolates could utilize atrazine as the sole carbon and nitrogen source. We used several polymerase-chain-reaction-based assays to screen for the presence of a number of atrazine-degrading genes and verified their identity through sequencing. All six isolates contain trzN and atzC, two well-characterized genes involved in the conversion of atrazine to cyanuric acid. An additional atrazine-degrading gene, atzB, was detected in one of the isolates as well, yet none appeared to contain atzA, a commonly encountered gene in atrazine impacted soils and atrazine-degrading isolates. Interestingly, the deoxyribonucleic acid sequences of trzN and atzC were all identical, implying that their presence may be the result of horizontal gene transfer among these isolates.     

Distribution and polymorphism of the flagellin genes from isolates of Campylobacter coli and Campylobacter jejuni.

The complex flagellar filaments of the LIO8 serogroup member Campylobacter coli VC167 are composed of two highly related subunit proteins encoded by the flaA and flaB genes which share 92% identity. Using oligonucleotide primers based on the known DNA sequence of both the flaA and flaB genes from C. coli VC167 in the polymerase chain reaction, we have shown conservation of both fla genes among isolates within the LIO8 heat-labile serogroup by digestion of the amplified product with PstI and EcoRI restriction endonucleases. Amplification and subsequent restriction analysis of the flaA flagellin gene from Campylobacter isolates belonging to 13 different LIO serogroups further identified 10 unique polymorphic groups. Within most of the serogroups examined, isolates appeared to contain flaA genes with conserved primary structures. Only in serogroups LIO11 and LIO29 did independent isolates possess flagellin genes with different primary structures. Furthermore, by employing primers specific for the flaB gene of C. coli VC167, all serogroups examined contained a second fla gene corresponding to flaB. In all serogroups except the LIO5 and LIO6 isolates which were identical to each other, the polymorphic pattern of this flaB gene was identical to that of the corresponding flaA gene. These data indicate that the presence of a second highly homologous flagellin gene is widespread throughout Campylobacter isolates and that in most instances, the primary structure of the two fla genes is conserved within isolates belonging to the same heat-labile LIO serogroup. This may represent the presence of clonal evolutionary groups in Campylobacter spp.     

Characterization of cry1, cry2, and cry9 genes in Bacillus thuringiensis isolates from China

Bacillus thuringiensis isolates from different ecological regions and sources of China were analyzed to study the distribution and diversity of cry genes and to detect the presence of novel cry genes. Strains containing cry1-type genes were the most abundant and represent 237 of the 310 B. thuringiensis isolates (76.5%). About 70 and 15.5% of the isolates contained a cry2 gene or cry9 gene, respectively, while 10.0% of the strains did not contain a cry1, cry2, or cry9 gene. Among the cry1 containing isolates, cry1A (67.7%), cry1I (60.6%), cry1C (43.9%), and cry1D (39.4%) genes were the most abundant. Forty-three different cry1 gene profiles were detected in this collection. Several cry1 genes were associated at a high frequency, such as the cry1C-cry1D and cry1A-cry1I gene combination. The cry1A and cry2 amplicons were digested with selected restriction enzymes to examine sequence diversity. Based on this RFLP analysis, one novel cry1A-type gene was observed.     

Nucleotide Variation in the Cytidine Triphosphate Synthetase Gene of Giardia duodenalis

ABSTRACT. The cytidine triphosphate synthetase genes from three diverse strains of Giardia duodenalis have been sequenced and found to vary significantly from one another. The isolates were chosen as representatives of three demes as determined by several criteria including divergence in the rDNA repeat unit. Inserts in the genes and protein are conserved in length but are the most divergent regions among the three sequences examined. Variation in the rest of the gene occurs primarily in the third base position resulting in many silent mutations. One of the isolates (1709) was found to contain two genes with high sequence homology.     

Diversity of tet resistance genes in tetracycline-resistant bacteria isolated from a swine lagoon with low antibiotic impact

Tetracycline resistance has been extensively studied and shown to be widespread. A number of previous studies have clearly demonstrated that a variety of tetracycline resistance genes are present in swine fecal material, treatment lagoons, and the environments surrounding concentrated animal feeding operations (CAFOs). The diversity of tetracycline resistance within a swine lagoon located at a CAFO that used only bacitricin methylene disalicylate as an antibiotic was evaluated by screening 85 tetracycline-resistant isolates for the presence of 18 different genes by performing PCR with primers that target tetracycline efflux genes of Gram-negative bacteria and ribosomal protection proteins. In addition, partial 16S rRNA sequences from each of these isolates were sequenced to determine the identity of these isolates. Of the 85 isolates examined, 17 may represent potential novel species based on BLAST results. Greater than 50% of the isolates (48 out of 85) were found to not contain targeted tet efflux genes. Though minimum inhibitory concentrations ranged widely (16 - >256 mg/L), these values did not give an indication of the tet genes present. Ten new genera were identified that contain at least one tet efflux gene. Five other genera possessed tet efflux genes that were not found in these organisms previously. Interestingly, none of the isolates possessed any of the selected ribosomal protection protein genes. Though tetracycline resistance was found in bacteria isolated from a swine CAFO lagoon, it appears that the limited antibiotic use at this CAFO might have impacted the presence and diversity of tetracycline resistance genes.     

The identification of a tetracycline resistance gene tet(M), on a Tn916-like transposon,in the Bacillus cereus group

In order to investigate whether resistance genes present in bacteria in manure could transfer to indigenous soil bacteria, resistant isolates belonging to the Bacillus cereus group (Bacillus cereus, Bacillus anthracis and Bacillus thuringiensis) were isolated from farm soil (72 isolates) and manure (12 isolates) samples. These isolates were screened for tetracycline resistance genes (tet(K), tet(L), tet(M), tet(O), tet(S) and tet(T)). Of 88 isolates examined, three (3.4%) isolates carried both tet(M) and tet(L) genes, while four (4.5%) isolates carried the tet(L) gene. Eighty-one (92.1%) isolates did not contain any of the tested genes. All tet(M) positive isolates carried transposon Tn916 and could transfer this mobile DNA element to other Gram-positive bacteria.