Marine intrusion and freshwater discharge as opposite forces driving fish guilds distribution along coastal plain streams

This work investigated variations in fish guilds along marine surf zone to freshwater reaches of coastal plain streams and their relationships with environmental factors. Fish and abiotic data were collected monthly during 1 year and an automatic image-recording system was used to monitor marine intrusion events. Aside ephemeral salinity gradients produced by storm surges, freshwater conditions prevailed inside streams. Despite of that, fish habitat use guilds were spatially distributed according to their salinity tolerance, with marine species occurring mainly in the stream site near the adjacent surf zone and non-salinity tolerant freshwater fish in the upstream site. Marine intrusion was the main factor correlated with the entrance of marine-related fish into streams during summer. In contrast, higher rainfall during colder months prevented the dominance of marine species. This work highlighted that spatial segregation in fish habitat use guild could occur even in the absence of long-lasting salinity gradients, since active colonization by euryhaline fish and sporadic marine intrusions can lead to the occurrence of marine-related fish in coastal plain streams. Future studies should evaluate if this marine intrusion role on fish of coastal plain streams would be affected by changes in sea level and rainfall in a global warming scenario.     

Colonization of an artificial stream by fishes and aquatic macro-invertebrates

We examined colonization by fishes and macro-invertebrates from permanent streams into an artificial freshwater stream simulating lotic temporary bodies of water that exist for only a limited period each year. After introducing water, invertebrates such as chironomid larvae in mud increased in numbers rapidly in the experimental stream, although they were rare in mud in the permanent streams. Eleven of 12 fish species present in the permanent streams colonized the experimental stream and preyed upon invertebrates, although fish composition differed significantly between the two streams. About 100 days after the initiation of the experiment, both species richness and diversity in the experimental stream reached almost the same level as that in the permanent streams. More diverse fishes colonized the complex section where habitat diversity was high compared to the simple section in the experimental stream. Our study strongly suggests that lotic temporary waters such as temporary streams around main rivers have unique ecological characteristics and serve as valuable foraging sites for fish.     

Searching for biodiversity indicators in running waters: do bryophytes, macroinvertebrates, and fish show congruent diversity patterns?

The degree to which different taxonomic groups show congruence in diversity patterns has attracted increased attention, yet such studies on stream biota are lacking. We examined environmental correlates of and congruence in the species richness patterns of bryophytes, macroinvertebrates, and fish in 101 boreal streams in Finland. Congruence in species richness among the taxonomic groups was generally low, mainly because of their differing responses to major environmental gradients. Bryophytes and macroinvertebrates showed the strongest degree of congruence, but even this relationship had a relatively weak predictive power. Bryophyte diversity showed the strongest relationship with water colour, followed by habitat stability, and stream size. Macroinvertebrate diversity increased with stream size, and further variation was accounted for by water colour and acidity. Fish species richness showed a weak and complex relationship with geographical location, stream size, and in-stream habitat characteristics. The regression models explained 23, 45, and 26% of the variation in species richness of bryophytes, macroinvertebrates, and fish, respectively. Our results suggest that indicator taxa may be of limited value in stream biodiversity inventories. Habitat-based approaches are suggested as an alternative surrogate measure in the conservation evaluation of lotic biodiversity.     

Variation in parasite communities and health indices of juvenile Lepomis gibbosus across a gradient of watershed land-use and habitat quality

Parasites of fishes vary in community structure and species abundance in response to environmental conditions and pollutants. As a result, the use of parasites as bioindicators of habitat degradation has been proposed and successfully applied in recent years. Here, helminth parasites of juvenile pumpkinseed Lepomis gibbosus from three streams representing a gradient of watershed development and habitat quality were examined to assess variation in parasite communities. Health assessment indices were also generated for each host to quantify the influence of habitat on the observed health of individuals. A total of 22 parasite taxa were recovered from examined fish, comprising 11 digeneans, 3 cestodes, 2 acanthocephalans, 5 monogeneans and 1 crustacean. In the most disturbed stream, parasite species richness was lowest and total abundance was highest, while parasite abundance was lowest and diversity highest in the least disturbed stream. There was no significant difference in health indices among streams. Analysis of similarities (ANOSIM) and Bray–Curtis dissimilarity in species composition (SIMPER) identified Posthodiplostomum spp. and Actinocleidus sp. as the species driving parasite community dissimilarity. These taxa are relatively easy to identify to genus level and thus could be appropriate for use as indicators of environmental health, where increased abundance would suggest negative changes in habitat quality. However, larger scale study including more streams would be necessary to establish baseline community data before such implementation would be feasible.     

Altitudinal gradients in stream fish diversity and the prevalence of diadromy in the Sixaola River basin,Costa Rica

Landscape-scale patterns of freshwater fish diversity and assemblage structure remain poorly documented in many areas of Central America, while aquatic ecosystems throughout the region have been impacted by habitat degradation and hydrologic alterations. Diadromous fishes may be especially vulnerable to these changes, but there is currently very little information available regarding their distribution and abundance in Central American river systems. We sampled small streams at 20 sites in the Sixaola River basin in southeastern Costa Rica to examine altitudinal variation in the diversity and species composition of stream fish assemblages, with a particular focus on diadromous species. A set of environmental variables was also measured in the study sites to evaluate how changes in fish assemblage structure were related to gradients in stream habitat. Overall, fish diversity and abundance declined steeply with increasing elevation, with very limited species turnover. The contribution of diadromous fishes to local species richness and abundance increased significantly with elevation, and diadromous species dominated assemblages at the highest elevation sites. Ordination of the sampling sites based on fish species composition generally arranged sites by elevation, but also showed some clustering based on geographic proximity. The dominant gradient in fish community structure was strongly correlated with an altitudinal habitat gradient identified through ordination of the environmental variables. The variation we observed in stream fish assemblages over relatively small spatial scales has significant conservation implications and highlights the ecological importance of longitudinal connectivity in Central American river systems.     

Habitat Uses of Freshwater Fishes on the Scale of Reach System Provided in Small Streams

Synopsis Before we can conserve freshwater fish communities, we must first elucidate the habitat uses of each species. We investigated the relationships between the habits of freshwater fishes and environmental factors in small streams located in western Toyama Prefecture, Japan. We found 30 species – 11 fluvial, 5 brackish water, 2 anadromous, 11 amphidromous, and 1 catadromous – by a semi-quantitative collecting method. Using binary data (occurrence/non-occurrence of dominant fish), we conducted logistic regression analyses to construct predictive models. Stepwise logistic regression analyses on the basis of eight biotic and abiotic factors showed that the occurrence of dominant fish was explained by environmental conditions. The flow variation, ratio of stream bed slope to the surrounding area, distance from sea, and drift plant richness were relevant. Freshwater minnow, Phoxinus oxycephalus jouyi, preferred the gentle slopes of upstream catchments. The freshwater goby, Rhinogobius flumineus, appeared to prefer steeper slopes relative to the surrounding area. In contrast, diadromous gobies preferred reaches near the sea. These suggest a correspondence between lifestyle and preferred habitat. Consequently, the maintenance of various habitat conditions is necessary for the conservation of freshwater fishes.     

BIODIVERSITY RESEARCH: Native and introduced fish species richness in Mediterranean streams: the role of multiple landscape influences

Aim To examine the role of multiple landscape factors on the species richness patterns of native and introduced freshwater fish. Location Mediterranean streams, south‐western Iberian Peninsula, Europe (c. 87,000 km²). Methods We used a dataset of fish occurrences from 436 stream sites. We quantified the incremental explanatory power of multiple landscape factors in native, introduced, and overall local species richness using regression analysis. First, we related variation in local species richness across river basins to regional species richness (here, the basin species pool), area and factors of climate and topography. Second, we related within‐river basin local species richness to site’s climate and topography, and spatial structure derived from Principal Coordinates of Neighbour Matrices approach, after testing for species richness spatial autocorrelation; predicted local richness was mapped. Results Patterns of local species richness across river basins were strongly associated with regional species richness for overall, native and introduced species; annual rainfall showed a significant incremental contribution to variation in introduced species richness only. Within river basins, environmental factors were associated with local richness for the three species groups, though their contributions to the total explained variation were inferior to those of spatial factors; rainfall seasonality and stream slope were the most consistent environmental correlates for all species groups, while the influence of spatial factors was most prevalent for native species. Main conclusions Landscape factors operating among and within river basins seem to play a relevant role in shaping local species richness of both native and introduced species, and may be contingent on basin‐specific contexts. Nevertheless, local factors, such as habitat characteristics and biotic interactions and human‐induced disturbances may also be at play. Multiscale approaches incorporating a multitude of factors are strongly encouraged to facilitate a deeper understanding of the biodiversity patterns of Mediterranean streams, and to promote more effective conservation and management strategies.     

Association of macroinvertebrate assemblages with dissolved oxygen concentration and wood surface area in selected subtropical streams of the southeastern USA

Woody debris (CWD) is an important habitat component in northern Gulf of Mexico coastal plain streams, where low gradients and low flows allow accumulation of CWD and promote low dissolved oxygen (DO) concentrations. We tested the influences of CWD and DO on stream macroinvertebrates experimentally by placing two surface area CWD treatments each in three concentrations of ambient DO in two streams in Louisiana, USA, with macroinvertebrates collected from ambient woody debris used as a control. We also sampled macroinvertebrates in benthic and woody debris habitats in three streams twice yearly over 2 years to examine the applicability of the experimental results. Total abundance, richness (generic), and Shannon–Wiener diversity were all higher in lower DO conditions during the experiment, and total abundance was higher in the larger CWD treatment. Stream sampling corroborated the relationship between higher diversity and low DO in both benthic and woody debris habitats, but the relationship between richness and low DO only was supported in benthic habitats. Few taxa correlated with DO or CWD in the experiment (5 of 21 taxa) or stream survey (2 of 54 taxa). Whereas most taxa were uncorrelated with experimentally manipulated and in-stream measured variables, we suggest these taxa respond as generalists to stream habitat and physicochemistry. Based on this experiment and stream sampling, we believe the majority of macroinvertebrates in these streams are tolerant of seasonally low DO conditions.     

Benthic macroinvertebrate assemblages of coastal and continental streams and large rivers of southwestern British Columbia, Canada

In southwestern British Columbia (BC, Canada) and within a relatively small geographic area, lotic environments range from streams in coastal rainforests, to streams in arid continental grasslands, to very large rivers. Little is known about the invertebrate communities in large rivers in general, or in the streams of continental BC. The purpose of this study was to determine whether the benthic invertebrate community structure changes spatially between small coastal and small interior streams; between small streams versus large rivers; and whether changes in the benthic community are related to the environmental conditions. Kicknet samples and environmental data were collected from three coastal streams, three continental streams and two large rivers (discharge of 781 and 3620 m³/s, respectively). The large river sites had low invertebrate abundance, species richness and diversity, relative to the small streams. The coastal streams had the highest species richness and the continental streams had the highest invertebrate abundance. A number of taxa were specific to each class of stream. Invertebrate abundance decreased with river size, and increased with elevation, pH, conductivity, alkalinity, NO₂NO₃-N, total Kejldahl nitrogen and percent carbon in suspended solids.     

Fish species richness and stream order in Washington State streams

Synopsis We sampled fish at pairs of sites of the same stream order on opposite sides of drainage divides in the Cascade Mountains and in the southwest portion of Washington state. Elevation, gradient, drainage area, and stream order were significantly correlated with number of fish species collected at a site. Elevation accounted for the greatest portion of the variation in number of species and stream order for the least, but in low gradient, low elevation streams, stream order was significantly related to number of species. Species richness was greatest in low elevation, low gradient, high order streams. Species richness of a site reflected species richness of the drainage: in paired comparisons, sites in a drainage with a richer ichthyofauna had more fish species than sites in a drainage with fewer species. Addition of species with increasing stream order occurred in most streams, but replacement was more frequent than in other studies relating fish to stream order. The apparently higher frequency of replacement in this study appeared to be a result of headwater introductions of brook charr, Salvelinus fontinalis, and a tendency for cutthroat trout, Salmo clarki, to occupy headwaters when in freshwater.     

Fish assemblages across a complex,tropical freshwater/marine ecotone

Synopsis Riverine fish assemblages in the temperate zone generally show strong longitudinal patterns of faunal turnover and increases in species richness with increasing stream order. We examined the composition and structure of tropical fish assemblages across a complex freshwater/marine ecotone in Tortuguero National Park on the Caribbean coast of Central America. Species turnover was high between four characteristic habitats that largely corresponded with a longitudinal gradient of stream order over distances of less than 30 km. Suites of common fish species characterized each habitat: creeks, rivers, lagoons, and the sea. In addition to the habitat endemics, several species spanned two habitat types, but only three species were collected in more than two habitats. Multivariate gradient analysis of fish assemblages reflected a gradient of habitats that to some extent corresponded to fluvial distances. Due to the unusual configuration of coastal lagoons lying parallel to the coast, the ordination gradient showed little correlation with linear distance to the coast. Environmental variables related to habitat size and salinity showed greatest correspondence with the fish assemblage ordination gradient. Invertebrate-feeding fishes were the predominant trophic group in 15 of 16 fish assemblages, and inland creek sites contained a greater proportion of herbivores and omnivores than other sites. The relative fraction of herbivorous and detritivorous fishes showed a monotonic decline along the longitudinal habitat gradient from inland to coast. Patterns of species composition and richness at Tortuguero Park appeared to agree well with earlier models of factors influencing temperate zone stream fishes. Headwaters have low aquatic primary productivity and contain small colonizing fish species subject to large fluctuations in local densities and intermittent competition. Lagoons contain both large and small species, the latter being restricted largely to shallow edge habitats by predation. Lagoons exhibit more lentic environmental conditions, experience relatively fewer periodic disturbances than headwaters, and their assemblages are inferred to be under relatively greater influence of biotic factors. Fish assemblages of rivers and caños (swampy side channels and braids) appear to be under less abiotic control than headwaters and influenced less by biotic factors than lagoons.     

Temporal changes of biodiversity in urban running waters – Results of a twelve-year monitoring study

Freshwater biodiversity underlies severe threats, mainly suffering from habitat degradation by anthropogenic land use, in particular by urbanisation. However, recent long-term studies indicate recovery of stream macroinvertebrate diversity due to improved water quality at least in North America and Europe. We monitored macroinverbrates at 56 urban stream sites over a 12-year period (2009–2020) in Braunschweig, a German urban district. We utilised these data to investigate spatio-temporal changes in taxon richness and assemblage structure as well as factors potentially affecting the resulting patterns. Overall taxon richness was increasing over the study period, comprising both all taxa and taxa being indicators for healthy stream conditions. 53.6% of the sites had significant positive trends becoming most eminent since 2014, despite decelerating since 2018, the beginning of an extra-ordinary dry period. Only 10.7% of the study sites had negative trends. Assemblage structure was shaped by environmental factors like stream width and water quality. Over-average taxon richness including positive trends and higher numbers of indicator taxa of healthy stream conditions was found in streams with higher flow velocity, good saprobic conditions and more natural streambed structure. In contrast, low taxon richness and predominance of tolerant taxa were found in streams with more degraded conditions. Most of the environmental conditions having positive effects on taxon richness were improved by various programs set up by the environmental authorities. We therefore conclude, if urban stressors like organic pollution and structural degradation can be mitigated by revitalisation and water quality improvement, urban streams can have good potential for increasing biodiversity and improving ecological functioning.     

Decreased habitat specialization in macroinvertebrate assemblages in anthropogenically disturbed streams

Habitat specialists are considered to be more sensitive to anthropogenic disturbance than habitat generalists. However, a number of studies have shown that habitat specialists can be tolerant to or even benefit from environmental degradation, suggesting that the effect of disturbance on distributions and abundances of habitat generalists and specialists can be unpredictable. In this study, we assessed the effects of anthropogenic disturbance on the degree of specialization of stream macroinvertebrates in boreal streams. We first measured the niche width for each macroinvertebrate species using the Outlying Mean Index (OMI) analysis and then, using independent data sets of near-pristine and anthropogenically altered streams, we examined the effects of human disturbances on stream macroinvertebrates with different tolerances to environmental conditions. As expected, human disturbance significantly decreased the level of the specialization in stream macroinvertebrate assemblages, and taxa with narrow environmental tolerances were more sensitive to disturbance than taxa with wide tolerances. Despite being more sensitive to disturbance, taxa with narrow environmental tolerances were locally more abundant than tolerant taxa in near-pristine streams, indicating their better performance in their optimal environments. However, many tolerant taxa decreased in their occurrence in disturbed streams, suggesting that habitat generalists also tend to negatively respond to disturbance. Species-rich assemblages harboured more taxa with narrow tolerances compared with species poor assemblages, suggesting a high conservation value of streams with diverse macroinvertebrate assemblages. Consistent with findings for many biological groups, our results indicate that macroinvertebrate species specialised in certain habitats are more sensitive to environmental degradation than habitat generalists. However, contrary to many previous studies, our results suggest that only a few species are likely to benefit from anthropogenic disturbance and, therefore, environmental degradation does not necessary result in macroinvertebrate assemblages composed of a few tolerant taxa.     

The stability–diversity relationship in stream macroinvertebrates: influences of sampling effects and habitat complexity

1. Theory predicts that the stability of a community should increase with diversity. However, despite increasing interest in the topic, most studies have focused on aggregate community properties (e.g. biomass, productivity) in small‐scale experiments, while studies using observational field data on realistic scales to examine the relationship between diversity and compositional stability are surprisingly rare. 2. We examined the diversity–stability relationship of stream invertebrate communities based on a 4‐year data set from boreal headwater streams, using among‐year similarity in community composition (Bray–Curtis coefficient) as our measure of compositional stability. We related stability to species richness and key environmental factors that may affect the diversity–stability relationship (stream size, habitat complexity, productivity and flow variability) using simple and partial regressions. 3. In simple regressions, compositional stability was positively related to species richness, stream size, productivity and habitat complexity, but only species richness and habitat complexity were significantly related to stability in partial regressions. There was, however, a strong relationship between species richness and abundance. When abundance was controlled for through re‐sampling, stability was unrelated to species richness, indicating that sampling effects were the predominant mechanism producing the positive stability–diversity relationship. By contrast, the relationship between stability and habitat complexity (macrophyte cover) became even stronger when the influence of community abundance was controlled for. Habitat complexity is thus a key factor enhancing community stability in headwater streams.     

Fish species richness decreases with salinity in tropical coastal lagoons

Aim To analyse the relationship between fish species richness and salinity, and to provide a simple linear model for fish diversity trends across salinity gradients in a tropical coastal lagoon that can be compared with other similar ecosystems and other communities. To reinforce our conclusions, the salinity–fish richness relationship was investigated at different spatial scales (sampling station, set of stations and whole lagoon) and for two different periods, separated by 18 years. Location The Terminos coastal lagoon, a shallow tropical lagoon (mean maximum depths ranging between 3.5 and 4.5 m), is located in the southern Gulf of Mexico (18.5–18.8° N, 91.3–91.9° W). The lagoon is 70 km long and 30 km wide, with a surface area of 1700 km². Methods Fish sampling, individual identification to the species level, and environmental variable measurements were carried out monthly at 17 sampling points. Multiple regression analysis with a backward selection procedure was used to relate fish species richness to environmental variables. Other statistical techniques, including cluster analysis and ancova , were applied to experimental data surveys. Results Among the different environmental variables, salinity was significantly and consistently related to fish species richness, whatever the period and the scale of observation. We found mainly significant negative correlations (P < 0.05) between fish species richness and salinity when sampling stations were analysed individually, and particularly for the river runoff zones with high variation in salinity throughout the year. For the entire lagoon, robust negative linear models were observed when fish species richness was organized into salinity ranges, with salinity explaining c. 8% of the variation in mean fish species richness (in a multiple regression analysis; 63–93% when considered in isolation). Main conclusions In the Terminos lagoon the relationship between fish species richness and salinity is mainly negative on any spatial scale. This result may be due partially to the penetration of freshwater fishes into estuarine areas following freshwater discharges, and partially to the dominance of estuarine taxa more able to tolerate low than high salinity values. Finally, we suggest that the ‘realized’ ecotone, where species from different origins really mix, is situated between 5 and 10‰, corresponding to the highest fish richness.     

Effects of oil palm plantations on habitat structure and fish assemblages in Amazon streams

The aim of this research is to assess the effects of oil palm plantations on stream habitat and their fish assemblage diversity. We hypothesize that streams which drain through oil palm plantations tend to be less heterogeneous, limiting the occurrence of many species, than streams that drain through forest fragments, which support higher fish diversity. A total of 17 streams were sampled; eight in forest fragments and nine in oil palm plantations. Environmental and biological variables were sampled along 150 m stretch in each stream. Of the 242 environmental variables measured, ten were considered important to assess the condition of structural habitat, and out of these variables, four were considered relevant in the distinction between streams in oil palm plantations and forest fragments. A total of 7245 fishes were collected, belonging to 63 species. Unlike our original hypothesis, the species richness did not differ between forest fragment and oil palm plantations streams, showing that it is not a good divert measure in streams disturbance assessment. However, fish assemblages differed in species composition, and 56 species were recorded in oil palm plantation streams, while 44 species were recorded in forest fragments streams. Some species were identified as indicators of either altered (Aequidens tetramerus and Apistogramma agassizii) or undisturbed areas (Helogenes marmoratus). Overall, oil palm plantations were proven to change stream habitat structure and fish species distribution, corroborating other studies that have evidenced changes in patterns of biological community structure due to impacts by different land uses.     

Distribution of fishes in the Río Guayalejo-Río Tamesí system and relationships with environmental factors in northeastern Mexico

A priority issue in ecology and biogeography is understanding the patterns in species diversity and the causal factors of their distribution, which allows the generation of information for conservation strategies. The longitudinal distribution of fishes and their relationships with environmental variables were studied in the Guayalejo-Río Tamesí system (northeastern Mexico) from February 2000 to July 2001. A total of 5918 fish were caught in 27 collections along an altitudinal gradient in the main river course, from high mountain (1500 masl) to coastal plain near Tampico. Forty-three native and five exotic species, belonging to 35 genera in 23 families, were identified. Cluster analyses identified four major fish habitats in the river system. A distinctive euryhaline marine fish habitat (1) occurs near the mouth with native and two exotic species. Two other habitats consist essentially of freshwater fish species that are distributed along the longitudinal gradient. One of these habitats (habitat 4) shows greater diversity, as per the Shannon index value, and also includes amphidromous fish, in addition to two exotic freshwater fish; the other (habitat 2) includes freshwater, euryhaline and three exotic species. The changes in the frequency of occurrence and the abundance of Gambusia vittata, Astyanax mexicanus, and Xiphophorus variatus contribute to explaining differences between these habitats. Another habitat (3) is represented by two sampling sites located near the mouth and consist of freshwater and euryhaline fish and three exotic cyprinids with broad salinity tolerance. The low abundance and richness of exotic species suggest little impact on native fish fauna in this river. The fish assemblage of the Guayalejo-Tamesí river system species changes along a longitudinal gradient with the addition, replacement and presence of indicator species. Upstream fish fauna is mostly composed of freshwater species, some of them generalists that inhabit the entire longitudinal gradient, others that are restricted to certain sites, and the remainder of species is an assemblage composed of a mixture of euryhaline freshwater and marine species near the mouth.     

Stream channel geomorphology influences mussel abundance in southern Appalachian streams, U.S.A.

1. Studies of North American streams have shown that hydraulic parameters and stream geomorphology can explain unionid mussel abundance at both the reach and catchment scale. However, few studies have examined applicability of hydrogeomorphic variables across broader spatial scales, such as across whole catchments, or have elucidated conditions under which spates can affect mussel populations in streams. 2. We quantified freshwater mussel abundance and species richness and their physical habitat at 24 sites in eight streams in southern Appalachian catchments in 2000 and 2001. In addition, we modelled site‐specific hydraulic parameters during summer baseflow and bankfull stages to estimate high‐ and low‐discharge conditions, respectively. 3. Mussel abundance was related to stream geomorphology, whereas richness was related to stream size. Baseflow habitat parameters explained only minor variation in abundance or richness, and both measures were highly correlated with mean current velocity or stream size. Bankfull shear stress composed a relatively low proportion of overall mussel habitat variability, but it accounted for significant variation in abundance and richness. 4. Mussel abundance was highly variable at sites subject to low‐shear stress during spates, whereas abundance always was low at sites subject to high‐shear stress. These data suggest that habitat conditions during floods, rather than those at summer baseflow, limit the abundance of mussels in Appalachian streams. These data also suggest that mussel abundance and assemblage structure may be sensitive to any changes in channel geomorphology and hydraulic conditions that might result from land use in the catchment.     

Restoration of macroinvertebrates,fish, and habitats in streams following mining subsidence: replicated analysis across 18 mitigation sites

Human activities have led to declines in stream functioning and stream restoration seeks to reverse this trend. Longwall coal mining, an underground full‐extraction method, can cause surface subsidence, affecting streams by creating a series of deep pools that trap sediment, reduce habitat diversity, and impair macroinvertebrate and fish communities. Mining effects on streams must be mitigated to maintain the functions, values, and foreseeable uses of streams. Gate cutting is a procedure that alleviates pooling by reestablishing the stream grade, accompanied by procedures that stabilize the channel, restore substrates, and enhance in‐stream and riparian habitats. We evaluated effectiveness of gate cuts at restoring streams affected by subsidence pooling at 18 independent restoration sites over two mines in southwestern Pennsylvania, U.S.A. At each site, sampling stations were established to monitor effects of mining subsidence and its restoration on macroinvertebrates, fish communities, and habitats. We tested for effects of sequential interventions (subsidence and restoration) on biological and habitat variables in a replicated before–after design, controlling for potentially confounding temporal effects (sample month and antecedent effective precipitation). All biological indices and substrate‐related habitat indices declined following subsidence but improved following restoration. Macroinvertebrate indicex and taxa richness, substrates, and riparian vegetation continued to improve with time following restoration. Whereas other studies have concluded that biological communities may take many years to respond to restoration, these results indicate that where macroinvertebrate and fish communities are altered by subsidence pooling, they can be effectively restored using gate cuts to pre‐mining levels within relatively short time periods.