共查询到20条相似文献,搜索用时 218 毫秒
1.
Yuzhen Shi Wentan Li Aiguo Li Ruihua Ge Baocai Zhang Junzhi Li Guangping Liu Junwen Li Aiying Liu Haihong Shang Juwu Gong Wankui Gong Zemao Yang Feiyü Tang Zhi Liu Weiping Zhu Jianxiong Jiang Xiaonan Yu Tao Wang Wei Wang Tingting Chen Kunbo Wang Zhengsheng Zhang Youlu Yuan 《植物学报(英文版)》2015,57(5):450-467
To introgress the good fiber quality and yield from Gossypium barbadense into a commercial Upland cotton variety, a high-density simple sequence repeat(SSR) genetic linkage map was developed from a BC1F1 population of Gossypium hirsutum×Gossypium barbadense. The map comprised 2,292 loci and covered 5115.16 centi Morgan(c M) of the cotton AD genome, with an average marker interval of 2.23 c M. Of the marker order for 1,577 common loci on this new map, 90.36% agrees well with the marker order on the D genome sequence genetic map. Compared with five published high-density SSR genetic maps, 53.14% of marker loci were newly discovered in this map. Twenty-six quantitative trait loci(QTLs) for lint percentage(LP) were identified on nine chromosomes. Nine stable or common QTLs could be used for marker-assisted selection. Fifty percent of the QTLs were from G. barbadense and increased LP by 1.07%–2.41%. These results indicated that the map could be used for screening chromosome substitution segments from G. barbadense in the Upland cotton background, identifying QTLs or genes from G. barbadense, and further developing the gene pyramiding effect for improving fiber yield and quality. 相似文献
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Gui-Xiang Wang Yu Chen Jiu-Ran Zhao Lin Li Schuyler S. Korban Feng-Ge Wang Jian-Sheng Li Jin-Rui Dai Ming-Liang Xu 《植物学报(英文版)》2007,49(11):1580-1598
Defense response genes in higher plant species are involved in a variety of signal transduction pathways and biochemical reactions to counterattack invading pathogens. In this study, a total of 366 non-redundant defense response gene homologs (DRHs), including 124 unigenes/expressed sequence tags, 226 tentative consensuses, and 16 DRH contigs have been identified by mining the Maize Genetics and Genomics and The Institute for Genomic Research maize databases using 35 essential defense response genes. Of 366 DRHs, 202 are mapped to 152 loci across ten maize chromosomes via both the genetic and in silico mapping approaches. The mapped DRHs seem to cluster together rather than be evenly distributed along the maize genome. Approximately half of these DHRs are located in regions harboring either major resistance genes or quantitative trait loci (QTL). Therefore, this comprehensive DRH linkage map will provide reference sequences to identify either positional candidate genes for resistance genes and/or QTLs or to develop makers for fine-mapping and marker-assisted selection of resistance genes and/or QTLs. 相似文献
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Xu H He L Zhu Y Huang W Fang L Tao L Zhu Y Cai L Xu H Zhang L Xu H Zhou Y 《基因组蛋白质组与生物信息学报(英文版)》2003,1(3):236-242
Expressed sequence tags (ESTs) are widely used in gene survey research these years. The EST Pipeline System, software developed by Hangzhou Genomics Institute (HGI), can automatically analyze different scalar EST sequences by suitable methods. All the analysis reports, including those of vector masking, sequence assembly, gene annotation, Gene Ontology classification, and some other analyses, can be browsed and searched as well as downloaded in the Excel format from the web interface, saving research efforts from routine data processing for biological rules embedded in the data. 相似文献
4.
Shan-Zhi Lin Zhi-Yi Zhang Qian Zhang Yuan-Zhen Lin 《植物学报(英文版)》2006,48(9):1001-1007
The poplar is one of the most economically important and intensively studied tree species owing to its wide application in the timber industry and as a model material for the study of woody plants. The natural resource of poplars in China is replete. Over the past 10 years, the application of molecular biological techniques to genetic improvements in poplar species has been widely studied in China. Recent advances in molecular genetic improvements of poplar, including cDNA library construction, gene cloning and identification, genetic engineering, gene expression, genetic linkage map construction, mapping of quantitative trait loci (QTL) and molecular-assisted selection, are reviewed in the present paper. In addition, the application of modern biotechnology to molecular improvements in the genetic traits of the poplar and some unsolved problems are discussed. 相似文献
5.
High-density Linkage Map of Cultivated Allotetraploid Cotton Based on SSR, TRAP, SRAP and AFLP Markers 总被引:12,自引:0,他引:12
Jiwen Yu Shuxun Yu Cairui Lu Wu Wang Shuli Fan Meizhen Song Zhongxu Lin Xianlong Zhang Jinfa Zhang 《植物学报(英文版)》2007,49(5):716-724
A high-density linkage map was constructed for an F2 population derived from an Interspecific cross of cultivated allotetraploid species between Gossypium hirsutum L. and G. barbadense L. A total of 186 F2 individuals from the Interspecific cross of "CRI 36 × Hal 7124" were genotyped at I 252 polymorphic loci Including a novel marker system, target region amplification polymorphism (TRAP). The map consists of 1 097 markers, including 697 simple se- quence repeats (SSRs), 171 TRAPs, 129 sequence-related amplified polymorphisms, 98 amplified fragment length polymorphisms, and two morphological markers, and spanned 4 536.7 cM with an average genetic distance of 4.1 cM per marker. Using 45 duplicated SSR loci among chromosomes, 11 of the 13 pairs of homologous chromosomes were Identified In tetraploid cotton. This map will provide an essential resource for high resolution mapping of quantitative trait loci and molecular breeding in cotton. 相似文献
6.
Hai Long Yuming Wei Zehong Yan Bernard Baum Eviatar Nevo Youliang Zheng 《中国科学:生命科学英文版》2006,49(4):322-331
The thirty-three 5′ flanking conserved sequences of the known low-molecular-weight subunit (LMW-GS) genes have been divided into eight clusters, which was in agreement with the classification based on the deduced N-terminal protein sequences. The DNA polymorphism between the eight clusters was obtained by sequence alignment, and a total of 34 polymorphic positions were observed in the approximately 200 bp regions, among which 18 polymorphic positions were candidate SNPs. Seven cluster-specific primer sets were designed for seven out of eight clusters containing cluster-specific bases, with which the genomic DNA of the ditelosomic lines of group 1 chromosomes of a wheat variety ‘Chinese Spring’ was employed to carry out chromosome assignment. The subsequent cloning and DNA sequencing of PCR fragments validated the sequences specificity of the 5′ flanking conserved sequences between LMW-GS gene groups in different genomes. These results suggested that the coding and 5′ flanking regions of LMW-GS genes are likely to have evolved in a concerted fashion. The seven primer sets developed in this study could be used to isolate the complete ORFs of seven groups of LMW-GS genes, respectively, and therefore possess great value for further research in the contributions of a single LMW-GS gene to wheat quality in the complex genetic background and the efficient selections of quality-related components in breeding programs. 相似文献
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Non-heading Chinese cabbage (Brassica carnpestris ssp. chinensis Makino) is one of the most important vegetables in eastern China. A genetic linkage map was constructed using 127 doubled haploid (DH) lines, and the DH population was derived from a commercial hybrid "Hanxiao" (lines SW-13 x L-118). Out of the 614 polyrnorphic markers, 43.49% were not assigned to any of the linkage groups (LGs). Chi-square tests showed that 42.67% markers were distorted from expected Mendelian segregation ratios, and the direction of distorted segregation was mainly toward the paternal parent L-118. After sequentially removing the markers that had an interval distance smaller than 1 cM from the upper marker, the overall quality of the linkage map was increased. Two hundred and sixty-eight molecular markers were mapped into 10 LGs, which were anchored to the corresponding chromosome of the B. rapa reference map based on com- mon simple sequence repeat (SSR) markers. The map covers 973.38 cM of the genome and the average interval distance between markers was 3.63 cM. The number of markers on each LG ranged from 18 (R08) to 64 (R07), with an average interval distance within a single LG from 1.70 cM (R07) to 6.71 cM (R06). Among these mapped markers, 169 were sequence-related amplified polymorphism (SRAP) molecular markers, 50 were SSR markers and 49 were random amplification polymorphic DNA (RAPD) markers. With further saturation to the LG9 the current map offers a genetic tool for loci analysis for important agronomic traits. 相似文献
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Christopher G.Love Ambrose E.Andongabo Pierre W.C.Carion Christopher J.Rawlings Graham J.King 《植物学报(英文版)》2012,54(5):345-355
Associating phenotypic traits and quantitative trait loci (QTL) to causative regions of the underlying genome is a key goal in agricultural research.InterStoreDB is a suite of integrated databases designed to assist in this process.The individual databases are species independent and generic in design,providing access to curated datasets relating to plant populations,phenotypic traits,genetic maps,marker loci and QTL,with links to functional gene annotation and genomic sequence data.Each component database provides access to associated metadata,including data provenance and parameters used in analyses,thus providing users with information to evaluate the relative worth of any associations identified.The databases include CropStoreDB,for management of population,genetic map,QTL and trait measurement data,SeqStoreDB for sequence-related data and AlignStoreDB,which stores sequence alignment information,and allows navigation between genetic and genomic datasets.Genetic maps are visualized and compared using the CMAP tool,and functional annotation from sequenced genomes is provided via an EnsEMBL-based genome browser.This framework facilitates navigation of the multiple biological domains involved in genetics and genomics research in a transparent manner within a single portal.We demonstrate the value of InterStoreDB as a tool for Brassica research.InterStoreDB is available from:http://www.interstoredb.org 相似文献
11.
Sequence-related amplified polymorphism (SRAP), a new marker system based on a simple PCR reaction: its application to mapping and gene tagging in Brassica 总被引:187,自引:0,他引:187
G. Li C. F. Quiros 《TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik》2001,103(2-3):455-461
We developed a simple marker technique called sequence-related amplified polymorphism (SRAP) aimed for the amplification of
open reading frames (ORFs). It is based on two-primer amplification. The primers are 17 or 18 nucleotides long and consist
of the following elements. Core sequences, which are 13 to 14 bases long, where the first 10 or 11 bases starting at the 5′
end, are sequences of no specific constitution (”filler” sequences), followed by the sequence CCGG in the forward primer and
AATT in the reverse primer. The core is followed by three selective nucleotides at the 3′ end. The filler sequences of the
forward and reverse primers must be different from each other and can be 10 or 11 bases long. For the first five cycles the
annealing temperature is set at 35°C. The following 35 cycles are run at 50°C. The amplified DNA fragments are separated by
denaturing acrylamide gels and detected by autoradiography. We tested the marker technique in a series of recombinant inbred
and doubled-haploid lines of Brassica oleracea L. After sequencing, approximately 45% of the gel-isolated bands matched known genes in the Genbank database. Twenty percent
of the SRAP markers were co-dominant, which was demonstrated by sequencing. Construction of a linkage map revealed an even
distribution of the SRAP markers in nine major linkage groups, not differing in this regard to AFLP markers. We successfully
tagged the glucosinolate desaturation gene BoGLS-ALK with these markers. SRAPs were also easily amplified in other crops such as potato, rice, lettuce, Chinese cabbage (Brassica rapa L.), rapeseed (Brassica napus L.), garlic, apple, citrus, and celery. We also amplified cDNA isolated from different tissues of Chinese cabbage, allowing the fingerprinting of these sequences.
Received: 3 November 2000 / Accepted 24 November 2000 相似文献
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Target region amplification polymorphism: A novel marker technique for plant genotyping 总被引:51,自引:0,他引:51
The advent of large-scale DNA sequencing technology has generated a tremendous amount of sequence information for many important
organisms. We have developed a rapid and efficient PCR-based technique, which uses bioinformatics tools and expressed sequence
tag (EST) database information to generate polymorphic markers around targeted candidate gene sequences. This target region
amplification polymorphism (TRAP) technique uses 2 primers of 18 nucleotides to generate markers. One of the primers, the
fixed primer, is designed from the targeted EST sequence in the database; the second primer, the arbitrary primer, is an arbitrary
sequence with either an AT-or GC-rich core to anneal with an intron or exon, respectively. PCR amplification is run for the
first 5 cycles with an annealing temperature of 35°C, followed by 35 cycles with an annealing temperature of 50°C. For different
plant species, each PCR reaction can generate as many as 50 scorable fragments with sizes ranging from 50–900 bp when separated
on a 6.5% polyacrylamide sequencing gel. The TRAP technique should be useful in genotyping germplasm collections and in tagging
genes governing desirable agronomic traits of crop plants. 相似文献
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相关序列多态性(SRAP)是近年来发展起来的一种新型分子标记技术,具有稳定、简便、中等产率、高共显性等优点。实验利用北极狐的基因组为模版,首次把SRAP方法引入到哺乳动物中进行分析,对北极狐SRAP反应条件进行了优化,确立了北极狐SRAP-PCR的反应条件是:94℃预变性5min,94℃1min,350C1min,72℃2min,5个循环;940C变性1min,94℃1min,55℃1min(根据不同的引物设定),72℃1min,35个循环,72℃延伸10min,最后产物用6%的非变性的聚丙烯酰胺凝胶分离,得到的结果清晰、稳定、多态性高,条带可以用在后续对北极狐的遗传多样的分析和品种鉴定上。 相似文献
16.
Molecular markers and molecular genetic maps are prerequisites for molecular breeding in any plant species. A comprehensive genetic linkage map for cultivated Porphyra haitanensis T. J. Chang et B. F. Zheng has not yet been developed. In this study, 157 double haploid (DH) lines [derived from a YSIII (wildtype) × RTPM (red‐type artificial pigmentation mutant) cross] were used as a mapping population in P. haitanensis. A total of 60 pairs of sequence‐related amplified polymorphism (SRAP) primers and 39 pairs of simple sequence repeat (SSR) primers were used to detect polymorphisms between the two parents. Fifteen SRAP and 16 SSR polymorphic primer pairs were selected to analyze the DH population. A linkage genetic map comprising 67 SRAP markers and 20 SSR markers in five linkage groups, with a total length of 830.6 cM and an average of 10.13 cM between markers, was constructed. The markers were distributed evenly in all linkage groups without clustering. The linkage groups comprised 12–23 markers ranging in length from 134.2 to 197.3 cM. The estimated genome length of P. haitanensis was 942.4 cM, with 88.1% coverage. This is the first report of a comprehensive genetic map in P. haitanensis. The map presented here will provide a basis for the development of high‐density genetic linkage maps and lay the foundation for molecular breeding work in P. haitanensis. 相似文献
17.
植物功能基因组研究中出现的新型分子标记 总被引:1,自引:0,他引:1
随着功能基因组学的发展,表达序列标签(Expressed Sequence Tags, ESTs)已经成为开发以PCR为基础的新型分子标记的重要资源。本文综述了植物功能基因组研究中出现的EST-SSR、CAPS、SNP、SRAP和TRAP等新型分子标记的基本原理和特点。这些标记具有其显著的优势,如开发简便、信息量高和通用性好等,尤其是由于它们来源于基因编码区(ORFs),因此具有很高的物种间通用性,并且其多态性与基因功能变异相关联。目前,这些功能基因分子标记已广泛应用于遗传图谱构建、重要性状基因定位、比较作图、遗传多样性和品种鉴别、分子标记辅助选择育种等研究中。在文章最后简要介绍了作者所在实验室近年来所开展的功能基因分子标记工作,并说明了在使用这些功能基因分子标记时可能会出现的问题。 相似文献
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以SRAP和TRAP 2种标记技术对36份狗牙根材料的遗传多样性及亲缘关系进行了分析,其中包含34份河北省野生狗牙根种质资源。分别由238对SRAP和85对TRAP引物组合中筛选获得具有多态性的SRAP和TRAP引物组合各10对,PCR扩增总条带分别为186和161条,多态性条带156和132条,平均每对引物扩增出多态性条带各15.6和13.2条,多态性位点比率分别为83.4%和81.0%。2种标记合并进行聚类分析,所有供试的36份狗牙根材料遗传相似系数GS=0.519~0.983,平均为0.7。当GS=0.68时,可将36份供试材料分为4个类群。本研究结果表明河北野生狗牙根种质资源存在较丰富的遗传多样性,可为种质资源保护和选育优良狗牙根新品种提供科学依据。 相似文献
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Construction of a high density integrated genetic map for cucumber (Cucumis sativus L.) 总被引:1,自引:0,他引:1
Zhang WW Pan JS He HL Zhang C Li Z Zhao JL Yuan XJ Zhu LH Huang SW Cai R 《TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik》2012,124(2):249-259
The high-density consensus map was constructed based on the GY14 × PI 183967 map from an inter-subspecific cross and the extended
S94 × S06 map from an intra-subspecific cross. The consensus map was composed of 1,369 loci, including 1,152 SSR loci, 192
SRAP loci, 21 SCAR loci and one STS locus as well as three gene loci of fruit external quality traits in seven chromosomes,
and spanned 700.5 cM, of which 682.7 cM (97.5%) were covered by SSR markers. The average genetic distance and physical interval
between loci were 0.51 cM and ~268 kbp, respectively. Additionally, the physical position of the sequence-associated markers
aligned along the assembled cucumber genome sequence established a relationship between genetic maps and cucumber genome sequence
and to a great extent validated the order of markers in individual maps and consensus map. This consensus map with a high
marker density and well-ordered markers is a saturated and reliable linkage map for genetic analysis of cucumber or the Cucurbitaceae
family of plants. 相似文献