A rapid population expansion retains genetic diversity within European rabbits in Australia

The well documented historical translocations of the European rabbit (Oryctolagus cuniculus) offer an excellent framework to test the genetic effects of reductions in effective population size. It has been proposed that rabbits went through an initial bottleneck at the time of their establishment in Australia, as well as multiple founder events during the rabbit's colonization process. To test these hypotheses, genetic variation at seven microsatellite loci was measured in 252 wild rabbits from five populations across Australia. These populations were compared to each other and to data from Europe. No evidence of a genetic bottleneck was observed with the movement of 13 rabbits from Europe to Australia when compared to French data. Within Australia the distribution of genetic diversity did not reflect the suggested pattern of sequential founder effects. In fact, the current pattern of genetic variation in Australia is most likely a result of multiple factors including mutation, genetic drift and geographical differentiation. The absence of reduced genetic diversity is almost certainly a result of the rabbit's rapid population expansion at the time of establishment in Australia. These results highlight the importance of population growth following a demographic bottleneck, which largely determines the severity of genetic loss.     

Broad-scale patterns of body size in squamate reptiles of Europe and North America

Aim  To document geographical interspecific patterns of body size of European and North American squamate reptile assemblages and explore the relationship between body size patterns and environmental gradients.
Location  North America and western Europe.
Methods  We processed distribution maps for native species of squamate reptiles to document interspecific spatial variation of body size at a grain size of 110 × 110 km. We also examined seven environmental variables linked to four hypotheses possibly influencing body size gradients. We used simple and multiple regression, evaluated using information theory, to identify the set of models best supported by the data.
Results  Europe is characterized by clear latitudinal trends in body size, whereas geographical variation in body size in North America is complex. There is a consistent association of mean body size with measures of ambient energy in both regions, although lizards increase in size northwards whereas snakes show the opposite pattern. Our best models accounted for almost 60% of the variation in body size of lizards and snakes within Europe, but the proportions of variance explained in North America were less than 20%.
Main conclusions  Although body size influences the energy balance of thermoregulating ectotherms, inconsistent biogeographical patterns and contrasting associations with energy in lizards and snakes suggest that no single mechanism can explain variation of reptile body size in the northern temperate zone.     

Forest and the city: A multivariate analysis of peri-urban forest land cover patterns in 283 European metropolitan areas

Heterogeneous definitions of urban areas and poorly homogenized forest data at the country scale have hampered the comparative assessment of peri-urban forest structure in developed countries. The present study investigates selected landscape characteristics of peri-urban forests in 283 metropolitan areas in Europe controlling for the role of the local context and regional suburbanization trends. Using landscape metrics derived from Urban Atlas maps (a Copernicus/GMES initiative providing a comprehensive land-use assessment of European cities >100,000 inhabitants), significant differences in peri-urban forest structure were detected under five European regions. Specific class metrics (percent forest area, mean patch size, perimeter-to-area ratio) were correlated with urban morphology, landscape and territorial indicators. On average, forest cover is larger in northern and southern European metropolitan areas. Forest patch size increases from western to eastern Europe, with more regular patch shapes in central and eastern regions and less regular shapes in the rest of Europe. Forest class area increases with the area of discontinuous, medium-density settlements. Forest patch size increases with the average patch size of discontinuous dense urban fabric. Our evidence outlines a ‘sprawl model' shaping fringe landscapes characterized by discontinuous urban settlements mixed with fragmented – but possibly well protected – forest patches.     

Phenotypic variation of the introduced perennial Solidago gigantea in Europe

The exotic perennial Solidago gigantea belongs to the most widespread and abundant plant invaders in Europe, found throughout the range from northern Italy to southern Scandinavia. Morphological variation of this species in Europe was assessed by scoring plants from 22 populations along a north-south transect for quantitative and qualitative characters. All size related and floral characters varied significantly among populations. Size related characters exhibited large coefficients of variation and high intraclass correlations. Floral characters varied considerably less and showed rather narrow unimodal distributions. Pubescence of leaf main vein varied from glabrous to weakly pubescent. Leaf surfaces beneath as well as secondary veins were uniformly glabrous among the shoots. The first three principal components accounted for 56.5% of the variation and formed no separated clusters among the shoots sampled. Chromosome counts revealed only tetraploid cytotypes (2n=36). The low variation in taxonomic key characters and chromosome numbers suggest that the tetraploid cytotype of S.gigantea has became naturalized in Europe, probably the result of only few introductions of this species to Europe.     

Quantitative trait and allozyme divergence in the Greenfinch (Carduelis chloris, Aves: Fringillidae)

Quantitative trait divergence and variability among 12 greenfinch populations across continental Europe was examined and compared to divergence in neutral genetic markers (allozymes). The added among locality variance component for 16 skeletal traits was large (mean 28%, range 4–48%) equalling a divergence of up to three SD units. The divergence in quantitative traits (Qst = 0.04-0.48) greatly exceeded that in alloymes (F_ST= 0.01-0.07), indicating the differentiation in quantitative traits to be larger than expected by mutation and drift alone. This conclusion was consistent also with results from the multivariate approach of Rogers & Harpending. However, genetic and morphometric distances between populations were positively correlated, even when controlling for the geographic distance separating pairs of populations. In concordance with Bergmann's rule, most traits were strongly and positively correlated with latitude, indicating latitudinally ordered genetic or/and environmental effects. However, the correlation between lower mandible width and latitude was strongly negative, demonstrating an inverse relationship between beak size and body size across the populations. These results are interpreted to reflect the re-colonization of history of northern Europe (genetic and geographic distances correlated) which has been paralleled by selection acting on quantitative traits (Q_ST>F_ST)- In particular, the counter-gradient variation in beak width, a functionally important trait, is suggestive of an adaptive basis for quantitative trait divergence.     

Global climate change and phenotypic variation among red deer cohorts.

The variability of two fitness-related phenotypic traits (body weight and a mandibular skeletal ratio) was analysed among cohorts and age-classes of red deer in Norway. Phenotypic variation among cohorts was pronounced for calves, yearlings and reproductively mature adults. Fluctuations in cohort-specific mean body weights and skeletal ratios of adults correlated with global climatic variation in winter conditions influenced by the North Atlantic Oscillation while cohorts were in utero. Red deer born following warm winters were smaller than those born after cold winters, and this inter-cohort variability persisted into adulthood. Phenotypic variation among cohorts of red deer influenced by climate change may pose consequences for fitness of cohorts since body size and condition contribute to reproductive success and survival in male and female red deer. In particular, the recent trend of increasingly warm winters in northern Europe and Scandinavia may lead to reduced body size and fecundity of red deer, and perhaps other ungulates, in those areas.     

Structure of allozyme variation in Nordic Silene nutans (Caryophyllaceae): population size, geographical position and immigration history

We investigated allozyme variation in 34 populations of the perennial herb Silene nutans from Sweden and northern Finland, areas that were ice-covered during the last (Weichselian) glaciation. The present geographical structure of genetic variation in S. nutans in Sweden and northern Finland appears to have been mainly shaped by ancient historical processes. Patterns of variation in allele frequencies suggest two major postglacial immigration routes into Sweden, with populations entering the area from both the south and the east and forming a contact zone with admixed populations in central Sweden. While estimates of within-population genetic diversity and allelic richness are significantly correlated with present population size and geographical position (latitude), population size is not correlated with latitude. Low genetic diversity in the northern populations is more likely to have resulted from ancient stochastic events during the process of immigration than from recent population fragmentation. F _IS values are high and increase with latitude. Evidence of recent bottlenecks was detected in several southern Swedish populations: these can be interpreted in terms of population fragmentation as a result of anthropogenic disturbance. Soil pH is uncorrelated with population size and position.  © 2004 The Linnean Society of London, Biological Journal of the Linnean Society, 2004, 81 , 357–371.     

Cytological and morphological differences within Palaearctic Glyphina (Homoptera: Aphididae), and their taxonomic significance

Karyotype variation within the genus Glyphina in Europe is described and correlated with morphological differences. G.pseudoschrankiana sp.nov., on Betula pubescens in Europe and Japan, is separated form G.schrankiana Börner, on Alnus spp. in northern and central Europe, on the basis of differences in karyotype and morphology. G.jacutensis Mordvilko is synonymized with G.schrankiana. A key is provided to palaearctic members of the genus.     

Correlation between genetic and geographic structure in Europe

Understanding the genetic structure of the European population is important, not only from a historical perspective, but also for the appropriate design and interpretation of genetic epidemiological studies. Previous population genetic analyses with autosomal markers in Europe either had a wide geographic but narrow genomic coverage [1] and [2], or vice versa [3], [4], [5] and [6]. We therefore investigated Affymetrix GeneChip 500K genotype data from 2,514 individuals belonging to 23 different subpopulations, widely spread over Europe. Although we found only a low level of genetic differentiation between subpopulations, the existing differences were characterized by a strong continent-wide correlation between geographic and genetic distance. Furthermore, mean heterozygosity was larger, and mean linkage disequilibrium smaller, in southern as compared to northern Europe. Both parameters clearly showed a clinal distribution that provided evidence for a spatial continuity of genetic diversity in Europe. Our comprehensive genetic data are thus compatible with expectations based upon European population history, including the hypotheses of a south-north expansion and/or a larger effective population size in southern than in northern Europe. By including the widely used CEPH from Utah (CEU) samples into our analysis, we could show that these individuals represent northern and western Europeans reasonably well, thereby confirming their assumed regional ancestry.     

GENETIC AND MORPHOMETRIC DIVERGENCE IN ANCESTRAL EUROPEAN AND DESCENDENT NEW ZEALAND POPULATIONS OF CHAFFINCHES (FRINGILLA COELEBS)

Descendent populations of chaffinches (Fringilla coelebs) introduced to New Zealand about 120 years ago were compared with “ancestral” populations in northern Europe and with those in a broader region of Europe (including Iberia) using protein electrophoresis at 42 loci and 12 skeletal measurements. The New Zealand populations exhibit very small scale differentiation in genetics (F_st = 0.040) and morphometrics, and the haphazard pattern of among-population variation does not align with environmental variation nor is it predicted by the geographic proximity of populations. Thus random drift is implicated in the differentiation among the descendent populations. The New Zealand chaffinches have diverged only slightly in morphometrics from an extant population in southern England, and constant heritability rate tests suggest that random drift alone could account for this small shift. In sharp contrast, the European populations are subdivided genetically (F_st = 0.222) and morphometrically, and this subdivision coincides with the Pyrenees mountains between Iberia and northern Europe which act as a barrier to gene flow between these regions. Iberian populations have smaller skulls and longer wings on average than northern European populations and are characterized by high frequencies of alternative common alleles at Ada and Np. Within both the Iberian and northern European regions, however, populations are effectively panmictic in protein-encoding genes, indicating that homogenizing gene flow is apparently extensive enough to prevent among-population differentiation in allozymes by drift. Variation in body size as represented by PC I is related to environmental productivity across Europe, unlike in New Zealand. These observations jointly suggest that longer term adaptive differentiation via selection for optimal body size has evolved in Europe. Because multilocus evolution is expected to proceed slowly in populations subject to the opposing forces of selection and homogenizing gene flow, I argue that local adaptation within “ancestral” populations in northern Europe may still be evolving.     

Life history evolution in Asobara tabida: plasticity in allocation of fat reserves to survival and reproduction

Life history variation can be genetically based, or it may be due to environmental effects on the phenotype. In this paper we examine life history variation in relation to differences in habitat in the parasitoid Asobara tabida. Differences in the spatial distribution of host patches, the length of the season, host suitability, and competition between parasitoids all contribute to the selection for differences in life history between strains from northern and southern Europe. Strains were compared with respect to the allocation between reproduction and survival in experimental environments that varied with regard to the availability of food or to the number of hosts offered per day. Upon emergence parasitoids originating from southern Europe have higher egg loads and smaller fat reserves than parasitoids originating from northern Europe. Parasitoids from both southern and northern Europe show plasticity in allocation: food shortage causes a decrease in egg production, and rich breeding opportunities an increase in egg production. This plasticity is greater in the northern strain. Fat reserves play a central role in the physiology of this allocation. Fat can be used for both reproduction and survival. There is no oosorption, so once fat is allocated to reproduction it can no longer be used for survival. Differences in plasticity in allocation can therefore be considered as differences in the timing of egg production.     

Latitudinal population differentiation in two species of Solidago (Asteraceae) introduced into Europe

Solidago altissima and S. gigantea were introduced from North America to Europe ~250 yr ago and are now considered aggressive weeds in abandoned fields and conservation areas. We studied patterns of genetic differentiation in these two species along their present latitudinal range in Europe (44-61 degrees N). Two generations of clonally propagated ramets from randomly selected genets of 24 populations of each species were grown in a common-garden experiment at latitude 47 degrees N from 1991 to 1992. Both species showed significant variation among populations in morphological and life-history characters: at this southern location, plants from northern populations were smaller and flowered earlier than plants from southern populations. The gradient of clinal variation was more pronounced in the second year of cultivation than in the first and was steeper in S. altissima than in S. gigantea. Within-population variation among genotypes was significant tot most characters in the case of S. altissima. Phenological rate (reciprocal of days to flowering) and size at maturity showed a significant negative correlation among populations bot not among genotypes within populations, indicating that genetic trade-offs may occur at one but not another infraspecific level. We suggest that the pattern of among-population variation reflects rapid adaptive population differentiation after introduction of the species to Europe.     

A Genome-Wide Analysis of Populations from European Russia Reveals a New Pole of Genetic Diversity in Northern Europe

Several studies examined the fine-scale structure of human genetic variation in Europe. However, the European sets analyzed represent mainly northern, western, central, and southern Europe. Here, we report an analysis of approximately 166,000 single nucleotide polymorphisms in populations from eastern (northeastern) Europe: four Russian populations from European Russia, and three populations from the northernmost Finno-Ugric ethnicities (Veps and two contrast groups of Komi people). These were compared with several reference European samples, including Finns, Estonians, Latvians, Poles, Czechs, Germans, and Italians. The results obtained demonstrated genetic heterogeneity of populations living in the region studied. Russians from the central part of European Russia (Tver, Murom, and Kursk) exhibited similarities with populations from central–eastern Europe, and were distant from Russian sample from the northern Russia (Mezen district, Archangelsk region). Komi samples, especially Izhemski Komi, were significantly different from all other populations studied. These can be considered as a second pole of genetic diversity in northern Europe (in addition to the pole, occupied by Finns), as they had a distinct ancestry component. Russians from Mezen and the Finnic-speaking Veps were positioned between the two poles, but differed from each other in the proportions of Komi and Finnic ancestries. In general, our data provides a more complete genetic map of Europe accounting for the diversity in its most eastern (northeastern) populations.     

Geographic variation of the winter diet of the Red Kite Milvus milvus in the Iberian Peninsula

This paper presents data on the winter diet of the Red Kite Milvus milvus in the Iberian Peninsula. The diet composition and its relationship with food abundance and habitat characteristics were studied in two areas (northern and southern plateaux) with different food availability and habitat composition. Red Kites showed a clear difference in diet between the two plateaux, with a higher consumption of carrion on the northern plateau and of game species on the southern plateau. Common Voles Microtus arvalis , despite being a very abundant prey on the northern plateau, did not appear in the diet in high numbers, but their frequency was related to the proportion of land occupied by nonirrigated (cereal) crops. High frequencies of "small" carrion (e.g. farmed Rabbits Oryctolagus cuniculus , poultry Gallus sp.) in the diet were correlated with a decrease in the trophic diversity which suggested an active choice of the food, at least in years with low vole densities. We suggest that the use of carrion is influenced not only by its abundance but by its availability to Red Kites. Refuse tips and muladares (dumps for dead livestock) and their management during the winter are important for the conservation of the species.     

Geographical and latitudinal variation in growth patterns and adult body size of Swedish moose (Alces alces)

We examined the geographical pattern in growth and adult body size among 14 populations of Swedish moose (Alces alces) using data from 4,294 moose (1.5 years old) killed during the hunting season in 1989–1992. In both sexes, adult body mass was significantly positively correlated with latitude. Moose in northern populations had a 15–20% larger adult body mass than moose in the south. Juvenile body mass was correlated with neither latitude nor adult body mass. Thus, variation in time (years) and rate of body growth after the juvenile stage were responsible for most of the variation in adult body mass among populations. Moose in northern populations grew for approximately 2 more years of life than southern moose. In contrast to adult body mass, skeletal size (measured as jawbone length) was not correlated with latitude, suggesting that variation in adult body mass was primarily due to differences in fat reserves. Discrimination between population characteristics, such as moose density, climate, and the amount of browse available to moose, showed climatic harshness to be the most important variable explaining geographical variation in body mass among populations. The results support the notion that in mammals body size increases with latitude in accordance with Bergmann's rule. We conclude that (1) variation in patterns of growth after the juvenile stage is the main cause of the latitudinal trend in adult body size in moose, and (2) climatic conditions are a more important factor than population density and availability of food in explaining geographical variation in growth patterns and adult body mass between populations of Swedish moose.     

Genetic variation of Saxifraga paniculata Mill. (Saxifragaceae): molecular evidence for glacial relict endemism in central Europe

Saxifraga paniculata Mill. is an amphi-atlantic species that is widely distributed in the Alps but also occurs with disjunct populations in central Europe. These isolated populations are considered to be glacial relicts. In the study presented here, we analysed the genetic variation within and between populations of Saxifraga paniculata in central Europe to test whether the molecular data give evidence for the supposed relict endemism. We used RAPD analysis and the analysis of molecular variance (AMOVA) technique to investigate 30 populations of Saxifraga paniculata from different locations in central Europe and adjacent geographical areas. In the RAPD analysis, 319 fragments could be amplified of which 91.2% were polymorphic. The percentage of polymorphic bands within populations correlated significantly with population size, indicating a higher level of inbreeding in small populations. AMOVA revealed 43.60% of the variation within populations, only 15.45% between populations within locations, and 40.95% between locations. Genetic distance between locations (Φ_ST) correlated significantly with the geographical distance between locations, giving evidence for geographical isolation. In an UPGMA cluster analysis, based on RAPD data, the populations were grouped together according to their location. The results exhibit a strong genetic differentiation which is obviously due to genetic drift in the isolated populations. Our study therefore gives evidence for glacial relict endemism of Saxifraga paniculata in central Europe.  © 2003 The Linnean Society of London, Biological Journal of the Linnean Society , 2003, 80, 11–21.     

Age and annual growth rate cause spatial variation in body size in Phrynocephalus przewalskii (Agamid)

Whether or not biogeographic rules dealing with spatial patterns of animal body sizes are valid for ectotherms is controversial. As the ectotherms grow all their lives, we explored the role of age and annual growth rate in body size variation in Phrynocephalus przewalskii in northern China. Morphological data were collected from 11 populations across a broad geographic gradient. Correlations between age, sex, climatic factors, and body size were analyzed using generalized linear model (GLM) and generalized linear mixed model (GLMM). GLM analysis indicated that the general body size of both sexes and the appendage size of females increased significantly with increasing temperature; however, the coefficient of determination was very small. GLMM analysis indicated that body size only correlated with age, whereas appendage size was affected by age, temperature, rainfall, and sunshine. Annual growth rates were positively correlated with temperature. We concluded that body size variation was mainly caused by age structure and plasticity of the growth rate in P. przewalskii and did not follow Bergmann''s rule; however, females followed Allen''s rule. Future studies to investigate the effect of energy restriction are needed to further understand the relationship between growth rate and body size. We also suggest that further studies on thermal advantage and sexual selection may be helpful to understand appendage size variation in P. przewalskii.     

Genetic structure of an introduced pest, grape phylloxera (Daktulosphaira vitifoliae Fitch), in Europe.

A model for the genetic structure of grape phylloxera populations in Europe was developed using hierarchical sampling techniques and AFLP-PCR (amplified fragment length polymorphism--polymerase chain reaction) methodology. One-hundred three European and 6 North American phylloxera populations were studied. An additional European sampling set comprising 60 samples was analyzed to study regional subdivision. The populations grouped into two clusters loosely correlated with collection site location. Phylloxera populations collected from northern (above lat 43 degrees) geographic regions were significantly different from southern (below 43 degrees) populations. The northern cluster was more heterogeneous than the southern cluster, possibly reflecting holocyclic versus anholocyclic reproduction. Microgeographic scales of phylloxera genetic structure displayed as much variation within as among host plants. The host plant did not affect the genetic structure of European phylloxera as revealed in two independent experiments.     

Contrasting patterns of mitochondrial and microsatellite genetic structure among Western European populations of tawny owls (Strix aluco)

A recent study of mitochondrial phylogeography of tawny owls (Strix aluco) in western Europe suggested that this species survived the Pleistocene glaciations in three allopatric refugia located in Iberia, Italy, and the Balkans, and the latter was likely the predominant source of postglacial colonization of northern Europe. New data from seven microsatellite loci from 184 individual owls distributed among 14 populations were used to assess the genetic congruence between nuclear and mitochondrial DNA (mtDNA) markers. Microsatellites corroborated the major phylogeographical conclusions reached on the basis of the mtDNA sequences, but also showed important differences leading to novel inferences. Microsatellites corroborated the three major refugia and supported the Balkan origin of northern populations. When corrected for differences in effective population size, microsatellites and mtDNA yielded generally congruent overall estimates of population structure (N*ST=0.12 vs. RST=0.16); however, there was substantial heterogeneity in the RST among the seven nuclear loci that was not correlated with heterozygosity. Populations representing the Balkans postglacial expansion interact with populations from the other two refugia forming two clines near the Alps and the Pyrenees. In both cases, the apparent position of the contact zones differed substantially between markers due to the genetic composition of populations sampled in northern Italy and Madrid. Microsatellite data did not corroborate the lower genetic diversity of northern, recently populated regions as was found with mtDNA; this discrepancy was taken as evidence for a recent bottleneck recovery. Finally, this study suggests that congruence among genetic markers should be more likely in cases of range expansion into new areas than when populations interact across contact zones.