Induction of cocklebur seed germination by anaerobiosis: A question about the “inhibitor hypothesis” of seed dormancy

Summary Germination of non-dormant small cocklebur (Xanthium pennsylvanicum Wallr.) seeds was improved by immersing them in water, suggesting that during their germination endogenous germination inhibitors are leached out. However, the same effect could be obtained by the quasi-anaerobic pre-incubation of the seeds. When seeds were fully imbibed, moreover, water immersion could no longer potentiate them to germinate, and only anaerobiosis increased the germination potential, thus raising a question against the inhibitor hypothesis of seed dormancy.     

Peptide nucleic acid (PNA): A model structure for the primordial genetic material?

It is proposed that the primordial genetic material could have been peptide nucleic aicds,i.e., DNA analogues having a peptide backbone. PNA momomers based on the amino acid, , -diaminobutyric acid or ornithine are suggested as compounds that could have been formed in the prebiotic soup. Finally, the possibility of a PNA/RNA world is presented, in which PNA constitutes the stable genetic material, while RNA which may be polymerized using the PNA as template accounts for enzymatic activities including PNA replication.     

Tolerance of pesticides and antibiotic resistance in bacteria isolated from wastewater-irrigated soil

A total of 64 bacterial isolates (40 Pseudomonas spp., 12 Azotobacter and 12 Rhizobium spp.) were characterized on the basis of morphological, cultural and biochemical characteristics. All the isolates were tested for their tolerance to the pesticides endosulfan, carbofuran, and malathion. 12.5% of the Pseudomonas isolates from soil tolerated concentrations of 1600 g malathion ml whereas 7.5% of isolates tolerated the same concentration of carbofuran. However, Pseudomonas isolates demonstrated a tolerance limit to endosulfan at a concentration of 800 g/ml. Asymbiotic N₂-fixers (Azotobacter) and symbiotic N₂-fixers (Rhizobium spp.) were also able to tolerate concentrations of pesticides up to 1600 g/ml. All the isolates were further tested for their antibiotic susceptibility against seven different antibiotics, nalidixic acid, cloxacillin, chloramphenicol, tetracycline, amoxycillin, methicillin, doxycycline. 100% of the Pseudomonas isolates were resistant to cloxacillin and 57.5% were resistant to methicillin. 7.5% of the isolates exhibited multiple resistance to five different antibiotics in three different combinations whereas 25% of the isolates showed multiple resistance to four different antibiotics in seven different combinations. Some of the resistant isolates were also screened for plasmid DNA and found to harbour a single plasmid.     

Archaeobotanical investigations in Liguria: preliminary data on the early Iron Age at Monte Trabocchetto (Pietra Ligure,Italy)

The archaeological site we studied is part of an early Iron Age hill fort (8th/7th cent. b.c.), located 800 m from the coast on the top of a hill named MonteTrabocchetto. This paper concerns an excavation, called saggio O, which disclosed a very varied stratigraphy characterised by highly anthropogenic layers and by a pit, presumably used as a silo for food storage, which was very rich in charred seeds and fruits. The study of the pit content showed the dominance of Hordeum vulgare, while Triticum dicoccon, T. monococcum, T. aestivum/durum, Panicum miliaceum and Setaria italica were less strongly represented. Some edible Leguminosae were also found (Lens culinaris, Vicia faba var. minor and V. ervilia). In the frequented areas around the pit, herbaceous weeds and fruit tree macro-remains were present (Prunus cf. spinosa, Corylus avellana, Quercus sp. and Vitis vinifera ssp. sylvestris). The identification of a large number of botanical taxa has provided important information on food of plant origin and agricultural practices during the early Iron Age on the Ligurian coast, the proto-historic archaeobotanical aspects of which are largely unknown.     

Changes in density, biomass, seed production and soil seed banks of the non-native invasive plant, Chromolaena odorata, along a 15 year chronosequence

The non-native invasive plant Chromolaena odorata (Asteraceae) was studied at 6 sites, with a chronosequence of ages from <1 to 15 years, at St Lucia, South Africa. C. odorata density, biomass, seed production and soil seed banks were quantified in three microsites: sun, semi-shade and shade. C. odorata density decreased with invasion age, apparently as a self-thinning process. Biomass per unit area and seed production/plant increased over the first 10 years, but declined greatly at 15 years. C. odorata plants grew larger and had much greater seed production in the sun relative to semi-shade, with small plants producing few if any seeds in the shade. Seed production in the sun varied from 2000 (<1-year old site) to 260000 (10 year) seeds m^–2 annum^–1. About 20–46% of seeds produced were germinable and showed the same trend with age of invasion, but was particularly low after 15 years. Assessment of soil seed banks immediately prior to seed production (seed 10 months old), indicates that about 5–10% of seeds in the sun and 11–22% in the shade were still germinable, resulting in germinable seed densities of 12–385 and 158–511 m^–2, respectively (excluding the 15-year old site). A greenhouse trial showed that burial of seeds, relative to those at the surface, and provision of less water, significantly improved seed persistence in the soil, while light intensity had no effect. Control of C. odorata is difficult due to rapid attainment of reproductive maturity, large production of wind-dispersed seeds and a short-term persistent seed bank. An integrated control strategy either excluding fire (coastal forest sites) or using fire prior to seed release in July/August to kill plants and soil-stored seeds immediately prior to seed production, together with biological, chemical and/or physical control, should be explored.     

Plasticity in the egg-spacing behavior of a seed beetle: Effects of host deprivation and seed patchiness (Coleoptera: Bruchidae)

Egg-laying females of the seed beetle Callosobruchus maculatusdiscriminate between egg-free and egg-laden seeds and produce a nearly uniform distribution of eggs among seeds. We examined plasticity in this trait in response to both an internal factor (level of host deprivation) and an environmental one (the spatial configuration of available seeds). Responses to each factor were measured in genetically divergent strains that show a relatively strong (S strain) or weak (B strain) tendency to spread eggs evenly among seeds. Following a modest (10-h) period of host deprivation, S-strain females distributed their eggs less uniformly among seeds; the proportion of females committing at least one oviposition mistake increased from 20 to 50%. Similarly, S-strain females distributed their eggs less uniformly if seeds were presented in multiple, discrete patches instead of in a single, large patch. The higher frequency of oviposition mistakes in the multiple-patch arena was caused in part by females maintaining a uniform distribution of eggs within patches but not among patches. In contrast, females from the sloppier B strain were unaffected by either host deprivation or resource dispersion. Responses to seed patchiness are discussed in relation to the role of learning in the egg-spacing behavior of C. maculatus.     

Flowering in Vitis: Conversion of tendrils into inflorescences and bunches of grapes

Inflorescences and fruits with viable seeds were produced in place of tendrils in plants of Vitis vinifera L. cv. Muscat of Alexandria and in a staminate hybrid grapevine (Vitis vinifera x V. rupestris Scheele) following repeated applications of 10–20 l of 50–200 M 6-(benzylamino)-9-(2-tetrahydropyranyl)-9H-purine (PBA) to apices. Young leaves, shoot tips and axillary buds were removed before the PBA treatments were commenced. The number and weight of berries produced by inflorescences derived from tendrils was closely correlated with the number and area of leaves retained. When application of PBA was continued after floral initiation there was formation of fused flowers and cleistogamous pollination.     

Interaction of Tetrahydrocortisol–Apolipoprotein A-I Complex with Eukaryotic DNA and with Single-Stranded Oligonucleotides

The complex formed by tetrahydrocortisol (THC) and apolipoprotein A-I (ApoAI) specifically interacts with eukaryotic DNA from rat liver. Taken together, physical and chemical data and the results of small-angle X-ray scattering analysis show that interaction of the THC–ApoAI complex with eukaryotic DNA results in deformation of the DNA double helix. Single-stranded fragments were demonstrated to cause deformation of the double helix. In this state DNA forms complexes with DNA-dependent RNA polymerase. This interaction is cooperative and of saturating type; up to six enzyme molecules bind with one DNA molecule. The putative site of complex binding with DNA is the sequence CC(GCC)_n found in many genes including the human ApoAI gene. An oligonucleotide of this type was synthesized. Its association constant (K _a) was 1.66·10⁶ M^–1. Substitution of THC with cortisol considerably decreases the K _a. We suggest that THC interacting with GC pairs of the binding site forms hydrogen bonds with cytosine, inducing rupture of the bonds within the complementary nucleic base pair.     

Heterochromatin and repetitive DNA frequency variation in regenerated plants of Helianthus annuus L.

Plant regeneration from cotyledons of seeds of a single progeny of a pure line of Helianthus annuus was studied in respect of the nuclear DNA contents of control and regenerated plants. Control plants were divided into two groups: those developed from seeds at the periphery of the inflorescence (showing a high basic 4C DNA content) and those from seeds developed in the middle of the inflorescence (showing a low basic 4C DNA content). It was observed that plants from peripheral seeds have a higher morphogenetic potential than those from central seeds. Cytophotometric analyses indicated that plants regenerated from cotyledons of both peripheral and central seeds show the same basic 4C DNA amount, which is higher that that observed in vivo in peripheral seeds. Molecular analysis by slot blotting and hybridization with different DNA families showed that the difference in nuclear DNA content between plants from peripheral and central seeds in vivo are mainly related to differences in the frequency of highly repeated, slow medium repeated (MR2), and ribosomal DNA families; by contrast, the increase in DNA amount in regenerated plants is mainly due to fast medium repeated sequences (MR1). Moreover, the frequency of kinetically isolated unique sequences was higher in peripheral seeds than in central ones and still higher in regenerated plants. Optical-density measurements of interphase nuclei showed an increase of heterochromatin in regenerated plants, suggesting that, whatever DNA is amplified in these plants, it remains condensed and probably inactive.Research supported by National Research Council of Italy, Special Project RAISA, Sub-project No. 2, Paper No. 2069     

Repair of double-strand breaks in plasmid DNA in the yeast Saccharomyces cerevisiae

Summary We studied the repair of double-strand breaks (DSB) in plasmid DNA introduced into haploid cells of the yeast Saccharomyces cerevisiae. The efficiency of repair was estimated from the frequency of transformation of the cells by an autonomously replicated linearized plasmid. The frequency of lithium transformation of Rad⁺ cells was increased greatly (by 1 order of magnitude and more) compared with that for circular DNA if the plasmid was initially linearized at the XhoI site within the LYS2 gene. This effect is due to recombinational repair of the plasmid DNA. Mutations rad52, rad53, rad54 and rad57 suppress the repair of DSB in plasmid DNA. The kinetics of DSB repair in plasmid DNA are biphasic: the first phase is completed within 1 h and the second within 14–18 h of incubating cells on selective medium.     

Identification and DNA sequence analysis of a γ-type gliadin cDNA plasmid from winter wheat

Summary Recombinant cDNA plasmids possessing the coding sequences for the -type gliadins were isolated from a cDNA library prepared from wheat seed poly (A⁺) RNA. One of these plasmids, pGliB48, specifically hybridizes to poly (A⁺) RNA molecules 1 400–1 500 bases in length that direct the synthesis of polypeptides at 38 Kd and 46 Kd, the latter size characteristic of the -type gliadins. The cDNA sequence of pGliB48 was determined and encompasses the 3 untranslated region as well as 245 amino acids from the C-terminus of the -type gliadin polypeptide. The 5-end of the DNA coding sequence consists of a tandem repeat unit composed of eight amino acids. Localized regions of homology are observed for the /-type and -type gliadin cDNA sequences.     

The evolutionary transition from RNA to DNA in early cells

Summary The evolution of genetic material can be divided into at least three major phases: first, genomes of nucleic acid-like molecules; secondly, genomes of RNA; and finally, double-stranded DNA genomes such as those present in all contemporary cells. Using properties of nucleic acid molecules, we attempt to explain the evolutionary transition from RNA alone as a cellular informational macromolecule prior to the evolution of cell systems based on double-stranded DNA. The idea that ribonucleic acid-based cellular genomes preceded DNA is based on the following: (1) protein synthesis can occur in the absence of DNA but not of RNA; (2) RNA molecules have some catalytic properties; (3) the ubiquity of purine and pyridine nucleotide coenzymes as well as other similar ribonucleotide cofactors in metabolic pathways; and (4) the fact that the biosynthesis of deoxyribonucleotides always proceeds via the enzymatic reduction of ribonucleotides.The RNA prior to DNA hypothesis can be further developed by understanding the selective pressures that led to the biosynthesis of deoxyribose, thymine, and proofreading DNA polymerases. Taken together these observations suggest to us that DNA was selected as an informational molecule in cells to stabilize earlier RNA-protein replicating systems. These arguments include the facts that (1) the 2-deoxy-containing phosphodiester backbone is more stable in aqueous conditions and in the presence of transition metal ions (such as Zn²⁺) than its ribo-equivalents; (2) the absence of proofreading activity in RNA polymerases leads to a higher rate of mutation in RNA genomes relative to DNA; (3) information in RNA degrades because of the tendency of cytosine to deaminate to uracil and the lack of a correcting enzyme; and (4) UV irradiation produces a larger number of photochemical changes in RNA molecules relative to double-stranded DNA. The absence of atmospheric UV attenuation during the early Earth environment (Hadean and early Archean) would have imposed an intense selection pressure favoring duplex DNA over other genetic information storage systems.If RNA preceded DNA as a reservior of cellular genetic information, then an RNA-replicating oligopeptide must have been one of the earliest protoenzymes from which RNA polymerase presumably evolved. We conclude that RNA polymerases are among the oldest classes of enzymes.     

Upstream sequences regulating legumin gene expression in heterologous transgenic plants

Summary We have previously isolated a legumin gene LeB4 from Vicia faba and shown that a 4.7 kb DNA fragment containing the gene leads to seed-specific expression in transgenic tobacco plants. Here we report that the 2.4 kb upstream sequence alone, when fused to either the neomycin phosphotransferase II (nptII) gene or the -glucuronidase (uidA) gene, leads to high enzyme levels in transgenic seeds of both tobacco and Arabidopsis. -Glucuronidase (GUS) activity is especially intense in the cotyledons fading out towards the embryonal root tip, a result confirmed by in situ hybridization. Staining of endosperm cells is consistent in both species. Analysis of a series of promoter deletion mutants fused to the nptII gene and introduced into tobacco plants revealed that about 1 kb of 5-flanking sequence is sufficient for high-level expression but indirect evidence suggests the presence of weak positive regulatory elements further upstream. Deletions leaving only 0.2 kb of upstream sequence reduce enzyme levels to less than 10%. A deletion which destroys the legumin box with its seed protein gene-specific CATGCATG motif has no obvious effects on expression levels.     

Plant regeneration from grape callus stored under a combination of low temperature and silicone treatment

Effects of the combination of low temperature and silicone treatment on the storage of grape callus (Vitis vinifera L. x V. labrusca L. cv. Kyoho; V. vinifera L. cv. Koshusanjaku) were examined. In Kyoho, the calli were stored at 10°C successfully for up to 360 days. Embryogenic calli of Koshusanjaku stored at 10°C retained the ability of embryogenesis after 360 days of storage. However, the color of both calli became brownish. This was improved by the combination of low temperature and silicone treatment. The calli of Kyoho survived by the storage under the combination of 15°C and silicone. Embryogenic calli stored at 10 and 15°C in combination with silicone survived for 360 days, and regenerated only after transfer onto a regeneration medium. Thus the combination of low temperature and silicone affects the longevity of the grape callus.     

Interaction between chemical mutagens with a delayed effect and metabolites of seeds

Summary A study was made of chromosome aberrations in Crepis capillaris seedlings, induced by the reaction products of chemical mutagens with seed metabolites. Interaction between ethylenimine and seed metabolites of some plants of the family Compositae (C. capillaris, Taraxacum officinale, Pyrethrum carneum, Helianthus annuus) has been found to lead to the formation of highly active secondary mutagens whose action remains similar to that of ethylenimine, although the effect of ethylenimine is enhanced dozens of times. The substances responsible for this enhancement effect are contained in the fruit coating of the seed. The metabolites of seeds of other plants studied (Triticum vulgare, Hordeum vulgare, Fagopyrum esculentum) enhanced the effect of ethylenimine only 1.5–2.0 times. Unlike ethylenimine, the effect of its derivatives (thioTEP and phosphazine) and of ethyl methanesulphonate, HN2 and maleic hydrazide is not enhanced after their interaction with metabolites of compositae plant seeds. Experiments with HN2 revealed an almost complete inactivation of the mutagenic action of NH2 by metabolites of C. capillaris seeds. The observed modification of the mutagenic action of ethylenimine and NH2 after successive treatment of seedlings with mutagens and metabolites of seeds points to the preservation of the mutagen in the cell. It is concluded that when chemical mutagens act on the cells, chromosome aberrations are induced not only by the chemical agent itself, but also by its reaction with cell metabolites.     

Ammonium-induced increase in NADH-glutamate dehydrogenase activity is caused by de-novo synthesis of the α-subunit

When callus derived from shoot segments of Vitis vinifera L. was transferred to ammonium-containing medium the aminating activity of NAD(H)-glutamate dehydrogenase (GDH, EC 1.4.1.2) increased significantly. This increase in enzyme activity closely paralleled an increase in the protein of the GDH -subunit (43.0 kDa), as detected by sodium dodecyl sulfate (SDS) gel electrophoresis and Western-blotting. A similar correlation was observed between the deaminating activity and the -subunit (42.5 kDa) which both decreased during this treatment. Using [³⁵S]methionine and immunochemical detection it was shown that the rate of synthesis of the -subunit increased considerably in the ammonium-containing medium while there was no detectable synthesis of the -subunit. At the isoenzyme level, ammonium caused an increase in the de-novo synthesis and hence the activity staining of the more anodic isoenzymes, which are hexameric and consist mainly of -subunits. The results indicate that the increase in NADH-GDH specific activity was due to de-novo synthesis of the -subunit of GDH and the assembly of only the more anodic isoenzymes.Abbreviations GDH glutamate dehydrogenase - PAGE polyacrylamide gel electrophoresis - SDS sodium dodecyl sulfate - TCA trichloroacetic acid     

Impact of ethanol and acetaldehyde on DNA and cell viability of cultured neurones

Ethanol consumption has long been associated with brain damage. However, the mechanism underlying this deleterious effect remains unclear. Among different hypotheses, acetaldehyde is regarded by certain authors as playing a major role in the expression of ethanol toxicity, but there are still some uncertainties about the exact nature of its implication. We therefore tried to characterize the profile of the alterations of neuronal viability and DNA integrity obtained after either a direct exposure to ethanol or to acetaldehyde. Ethanol at concentrations within the range of blood alcohol levels in intoxicated humans (100 mmol/L) induced DNA alterations without any apparent effect on cell viability. Acetaldehyde ( 1000 mol/L) can also induce DNA alterations but with a different profile of the DNA cellular alterations. The comparison between the distributions of the comet tail DNA indicated that ethanol induced strong breaks (tail DNA 60 a.u.) generation whereas acetaldehyde rather induced lower breaks (20tail DNA 50 a.u.) formation but affecting a greater number of neurones. Acetaldehyde had thus a different genotoxic potential which may suggest a different mode of action or a different cellular target. Furthermore, when a single 100 mmol/L ethanol exposure did not lead to any loss of cell viability, the addition of an inhibitor of aldehyde dehydrogenase was followed by a significant loss in viability. In contrast, the inhibition of catalase, which suppresses acetaldehyde synthesis, led to no reduced viability in the same exposure conditions. ROS also reduced viability, but this was observed only after both cytochrome P450 stimulation and catalase inhibition. These combined results could suggest that acetaldehyde may play a significant role in the expression of ethanol toxicity in brain.     

Molecular and cytological characteristics of nuclear DNA and chromatin for angiosperm systematics: Basic data forHelianthus annuus (Asteraceae)

As a contribution for the study of systematic and evolutionary relationships it is suggested to analyze nuclear DNA and chromatin by means of CsCl ultracentrifugation, thermal denaturation and renaturation, scanning densitometry, and (ultra)structural analyses. Relevant data have been obtained forHelianthus annuus as a first example.The 2C DNA content of four cultivars ofHelianthus annuus L. was calibrated by comparative measurement withAllium cepa nuclei using a scanning densitometer in on-line operation with a computer. Significant infraspecific variation could be detected: cvar. Amerikanische Riesen displayed 6.1 pg, cvar. Gefüllte Vielblütige 9.9 pg, cvar. Russian Mammoth 8.9 pg, and a Heidelberg strain 8.7 pg.The buoyant density in neutral CsCl was determined for cvar. Amerikanische Riesen to be 1.695 g · cm^–3; this corresponds to an average GC content of 35.1%. Thermal denaturation revealed a melting temperature of 86.4°C. Derivative thermal denaturation profiles led to the detection of several distinct DNA fractions.The species-specific nuclear structure is of the chromonematic type, but in differentiated cells the chromatin fibers may be more decondensed so that a chromomere-interchromomere structure appears. The heterochromatin constitutes an average of 4.5% of the total genome. Chromatin ultrastructure is characterized by a diffuse distribution of chromatin threads and patches. Nucleosomes of 110 Å diameter can be recognized.The data are discussed (a) in relation to findings on DNA variation in other plants, (b) in relation to the systematic usefulness and further characterization of nuclear DNA and chromatin, and (c) in relation to tissue-specific and functional variation of the species-specific chromatin structure.     

Biogenesis of monoterpenes

Cell suspension cultures of Muscat de Frontignan grapes Vitis vinifera L. are able to convert citral (a mixture of neral and geranial) into the corresponding monoterpenic alcohols, nerol and geraniol. The geraniol formed is esterified into geranyl acetate. Bioconversion of nerol or geraniol added alone to the cell suspension was also studied. Interconversions between these different monoterpenic compounds are described and discussed.     

Factors affecting seedling recruitment and survivorship of the Japanese subalpine stone pine, <Emphasis Type="Italic">Pinus pumila</Emphasis>, after seed dispersal by nutcrackers

To clarify the factors affecting the seedling establishment of the subalpine stone pine (Pinus pumila Regl.) from nutcracker-cached seeds, subsequently emerged seedlings were examined in two plots on Mt Akitakomagadake, northern Japan. The survivorship of older seedlings (2–20years old) was also monitored during six seasons at nine different sites. In one plot with 18 caches, seed germination occurred between June and mid-July. During this period, nutcrackers retrieved the stored pine seeds from 16 caches and ate some seeds immediately. Simultaneously, this nutcracker behavior caused mechanical damage to newly emerging seedlings (e.g. uprooting and tearing off cotyledons). Such initial loss to in situ harvesting and mechanical damage accounted for 75% of the total seeds remaining in the caches. The number of established current seedlings sharply declined during the first 2years, and the survival rate was 4.4% over four winters. Two major mortality factors were identified: uprooting by frost-heave soil disturbance in the spring of the second year and standing death by drought or other physiological stresses in early summer. In another plot with 13 caches, survivorship of newly emerged seedlings was also low (4.2%), but mortality was mostly due to summer drought, indicating that the frost-heave event was a site-specific disturbance factor. For older seedlings, survival rates reached approximately 90% even after six seasons and summer drought stress was a major mortality factor. My findings suggest that seedling recruitment of P.pumila was largely limited by both nutcracker disturbance and external disturbance (and/or stresses) at an early stage. However, after the critical first few years, pine seedlings were highly likely to survive and grow to the sapling stage despite the harsh environment of the high mountains.