RELATION OF TEMPERATURE TO DEVELOPMENT OF THE MACROTHALLUS OF DESMOTRICHUM UNDULATUM1,2

Desmotrichum undulatum (J. Agardh) Reinke (Phaeophyta) was found in the winter months in the littoral zone of a tidal marsh in Virginia. When field collections were maintained in culture media at 21 C, most cells of the thallus developed into plurilocular sporangia. Released zoospores developed into microthalli from which clonal cultures were established. At 21 C microthalli produced sporangia which released zoospores, subsequently developing into more microthalli. However, microthalli at 6 C formed filaments which subsequently developed into thalloid plants. When the thalloid plants of Desmotrichum formed in culture were subjected to 21 C, plurilocular sporangia were formed. These results support the proposition that the seasonal periodicity of Desmotrichum is due to a temperature-regulated phenomenon in the development of macrothalli.     

Zur Synonymie vonLitosiphon pusillus auf der Basis von Kulturversuchen

In June 1988,L. pusillus was collected for the first time in the Helgoland area. On the basis of observations in cultures, Pedersen's hypothesis that the microthalli ofL. pusillus are identical with those of threePilocladus species is discussed. The general morphology as well as the shape and dimensions of the unilocular sporangia are clearly different inPilocladus andLitosiphon microthalli. Therefore, Pedersen's opinion cannot be accepted.      

GROWTH OF COLPOMENIA PEREGRINA (PHAEOPHYCEAE) IN CULTURE: EFFECTS OF SALINITY,TEMPERATURE AND DAYLENGTH1

Increases in size of Colpomenia peregrina (Sauv.) Hamel microthalli were determined at six different combinations of salinity and temperature under laboratory conditions. Microthalli grown at low salinity (15%) did not have a growth rate significantly different from microthalli grown at high salinity (30%). However, more macrothalli were produced in higher salinity media. Fewer macrothalli were produced at lower temperatures. Growth of C. peregrina microthalli was also determined at six different combinations of daylength and temperature. Microthalli under 15:9 h (LD cycle) did not have a growth rate significantly different from microthalli under 9:15 h LD. However, more macrothalli were produced under long day conditions. Of the three different temperatures utilized (5, 13 and 20° C) only 5° C produced significantly different growth rates. Low temperature reduced growth to such an extent that macrothalli of a size that could be recognized in the field took approximately two months to produce in culture. These results may explain the seasonal presence/absence of the delophycean phase of C. peregrina in the field. Zoospore survivorship and macrothallus production of C. peregrina in culture indicated that both PES and an artificial medium were suitable for the laboratory cultivation of this plant.     

CULTURE STUDIES ON REPRODUCTION OF SPERMATOCHNUS PARADOXUS (PHAEOPHYCEAE,CHORDARIALES)1

The life history of Spermatochnus paradoxus (Roth) Kütz. isolated from the Mediterranean Sea was studied in culture. Meiospores develop to a microscopic stage (microthallus) which at 20°C perpetuates asexually by plurilocular sporangia and formation of new microthalli. At 9°C microthalli act as homothallic gametophytes. Fusion of isogametes results in a diploid microthallus which, after differentiation of an apical cell, leads back to Spermatochnus plants. In addition, gametes develop without fusion to form haploid macrothalli, the further fate of which has not been determined. Chromosome numbers alternate between n = 20 ± 2 in the microthalli and 2n = 41 ± 4 in macrothalli.     

Kalkbohrende Mikrothalli beiHelminthocladia undScinaia (Nemaliales,Rhodophyta)

Shell-boring microthalli in Helminthocladia and Scinaia (Nemaliales, Rhodophyta). Spores shed from pink mussel shells were shown to develop into branched monosiphonous thalli, their filaments penetrating into shell fragments. Isolates from four single germlings were cultivated. Two of these produced gametophytes ofHelminthocladia andScinaia; the others have so far only reproduced by tetraspores or monospores. Evidently the microthalli of some genera of the Nemaliales — which are, with the exception ofNemalion multifidum, known only from cultures — are shell-inhabiting and have therefore not been found in nature. The adult algae occur mainly on shells and CaCO₃ substrates. Until the beginning of the century,Helminthocladia andScinaia frequently occurred at Helgoland, but they have not been found there for more than 50 years. Their microthalli, however, are still present as shell-boring algae. This study is intended to stimulate similar ones in other genera of the Nemaliales so as to obtain a broader basis for discussion of systematic and phylogenetic relationships.     

DNA Fingerprinting of Dairy Propionibacteria Strainsby Pulsed-Field Gel Electrophoresis

Restriction endonuclease patterns generated by Pulsed-Field Gel Electrophoresis (PFGE) were used to compare 96 strains of dairy propionibacteria originating from dairy products, international and industrial collections; endonucleases XbaI and SspI gave satisfactory restriction patterns. However, whereas XbaI can be used for Propionibacterium freudenreichii, SspI seems more suitable for the three other species: P. acidipropionici, P. thoenii, and P. jensenii. It is a convenient method to differentiate the dairy propionibacteria from closely related bacteria and from others usually present in dairy products. We observed a considerable restriction fragment length polymorphism among the Propionibacterium chromosomes and especially for P. freudenreichii: among 48 strains we detected 40 different patterns. This species is the most commonly encountered in the Swiss-type cheeses and is the only Propionibacterium species used as a cheese starter. Conversely, the species P. acidipropionici is not very diverse: among nine strains we observed only four different patterns, two of which were closely related. This is probably because this species is not used as a starter in cheese manufacture and consequently is poorly represented in collections. When strains come from geographical different isolates, their patterns are always different with very few common bands. The presence of numerous identical strains was due to the fact that they were present at the same time in the national collections, research laboratory collections, and in the industrial ones.     

New Host and Locality Records for the Ixodes Auritulus (Acari: Ixodidae) Species Group, with a Review of Host Relationships and Distribution in the Neotropical Zoogeographic Region

New Neotropical records are presented for ticks belonging to the Ixodes auritulus Neumann, 1904, species group, together with a review of hosts and localities from which members of this complex have previously been collected. The range of the I. auritulus species group is now understood to include Colombia, and 15 bird species are listed as new hosts. From Guatemala to southern Argentina and Chile, specimens of the I. auritulus group have been found on birds belonging to the orders Ciconiiformes, Columbiformes, Falconiformes, Galliformes, Passeriformes, Piciformes, Procellariiformes and Tinamiformes. Passeriform birds are probably the principal hosts, sustaining tick populations throughout the Neotropics. Collection data have yielded four areas – southern South America (from 56° S to 51° S), southern Brazil (25° S–22° S), south-central Peru (14° S–10° S) and Central America (10° N–15° N) – where the I. auritulus group appears to commonly parasitize birds, but additional collections may show that the range of this complex is less discontinuous than currently perceived. Several morphological differences are described for ticks within and among these areas, but it is still unclear whether the I. auritulus group comprises more than one species.     

DArT for high-throughput genotyping of Cassava (Manihot esculenta) and its wild relatives

Understanding the distribution of genetic diversity within and among individuals, populations, species and gene pools is crucial for the efficient management of germplasm collections. Molecular markers are playing an increasing role in germplasm characterization, yet their broad application is limited by the availability of markers, the costs and the low throughput of existing technologies. This is particularly true for crops of resource-poor farmers such as cassava, Manihot esculenta. Here we report on the development of Diversity Arrays Technology (DArT) for cassava. DArT uses microarrays to detect DNA polymorphism at several hundred genomic loci in a single assay without relying on DNA sequence information. We tested three complexity reduction methods and selected the two that generated genomic representations with the largest frequency of polymorphic clones (PstI/TaqI: 14.6%, PstI/BstNI: 17.2%) to produce large genotyping arrays. Nearly 1,000 candidate polymorphic clones were detected on the two arrays. The performance of the PstI/TaqI array was validated by typing a group of 38 accessions, 24 of them in duplicate. The average call rate was 98.1%, and the scoring reproducibility was 99.8%. DArT markers displayed fairly high polymorphism information content (PIC) values and revealed genetic relationships among the samples consistent with the information available on these samples. Our study suggests that DArT offers advantages over current technologies in terms of cost and speed of marker discovery and analysis. It can therefore be used to genotype large germplasm collections.Electronic Supplementary Material Supplementary material is available for this article at     

Differentiation ofMelampsora rust species on willows in Japan using PCR-RFLP analysis of ITS regions of ribosomal DNA

To develop a reliable method for identifyingMelampsora species parasitic on willows in Japan, we differentiated 10Melampsora species by PCR-RFLP analysis. Internal transcribed, spacer (ITS) regions, including 5.8S ribosomal DNA, of 63 collections of 10Melampsora species and 4 collections of unidentified species were amplified by PCR. The fragments from the 67 collections varied in size (approximately 880 bp, 860 bp and 840 bp). The restriction sites in the amplified DNA fragments were mapped after the RFLP analysis using four restriction enzymes,Dra I,EcoRI,SspI andTaqI. All the collections were divided into 11 RFLP types. In the 6 species,M. caprearum, M. epiphylla, M. kamikotica, M. larici-urbaniana, M. microsora andM. yezoensis, the RFLP type was species-specific. The RFLP type ofM. chelidonii-pierotii andM. coleosporioides was identical. The collections ofM. epitea were separated into three RFLP types. One of these three types was identical with the type ofM. humilis. It is suggested that the PCR-RFLP analysis of ITS regions is a useful and reliable method for species identification ofMelampsora. Contribution No. 131, Laboratories of Plant Pathology and Mycology, Institute of Agriculture and Forestry, University of Tsukuba.     

IS THE PRODUCTION OF MULTIPLE SPERM TYPES ADAPTIVE?

Males of many species concurrently produce more than one sperm type, now called sperm heteromorphism. In the Drosophila obscura group, all species examined to date produce multiple sperm types that differ in sperm length. Short sperm types in at least three obscura group species do not participate in fertilization, leading to questions regarding the adaptive value of sperm heteromorphism. The common and pervasive inheritance of this trait in the obscura group, however, may indicate that sperm heteromorphism is phylogenetically constrained and therefore does not reflect an adaptive response to selection pressures. I measured interspecific variation in sperm length and determined the number of sperm types produced in 10 obscura group species. I subsequently tested if interspecific variation in sperm length is significantly associated with phylogeny by using an autoregressive comparative method. All obscura group species examined produce two visually distinct sperm lengths, short and long. Phylogenetic autoregression analyses indicated that 22% of the interspecific variation in long sperm is related to phylogeny, whereas short sperm are not significantly correlated with phylogeny. These results suggest different selection pressures on the two sperm length types; long sperm have evolved in response to fertilization demands and short sperm have been decoupled from these requirements.     

REMARKABLE CONSERVATION OF INTERNALLY TRANSCRIBED SPACER SEQUENCES OF ARTHROSPIRA (“SPIRULINA” ) (CYANOPHYCEAE,CYANOBACTERIA) STRAINS FROM FOUR CONTINENTS AND OF RECENT AND 30‐YEAR‐OLD DRIED SAMPLES FROM AFRICA1

The internally transcribed spacer (ITS) sequences of 21 Arthrospira clonal strains from four continents and assigned to four different species (A. platensis, A. maxima, A. fusiformis, A. indica) in the culture collections were determined. Two main clusters, I and II, were differentiated by 49 positions out of 475 nt or 477 nt, respectively. Each cluster was further subdivided into two subclusters. Subclusters I.A and I.B were separated by two substitutions, whereas subclusters II.A and II.B were distinguished by four substitutions. After direct sequencing of the PCR products, three dried samples from Chad aged between 3 months and 35 years yielded a sequence belonging to subcluster I.A, as did a recent commercial product. The strains grown in production plants belonged to the same (sub)clusters as strains from culture collections, mainly I.A and II. PCR primers specific for each cluster and subcluster were designed and tested with crude cell lysates of Arthrospira strains. One dried sample (“dihé” 1) and a herbarium sample from Lake Sonachi (Kenya) only contained I.A sequences, whereas the commercial product was a mixture of the four genotypes and the other two dried samples contained minor polymorphisms characteristic of different clusters. Five clonal Arthrospira strains, thought to be duplicates, showed the simultaneous presence of the two forms of the four diagnostic positions that distinguish subclusters genotype II.A and genotype II.B. This is likely to be caused by multiple copies of the rDNA operon, in a intermediate stage of homogenization between subcluster II.A and subcluster II.B. The high conservation of ITS sequences is in contrast with the assignment to four different species, the great morphological variability of the strains, and their wide geographic distribution.     

LIFE HISTORIES OF BLIDINGIA MINIMA (CHLOROPHYCEAE), ESPECIALLY SEXUAL REPRODUCTION1

Blidingia minima (Näg. ex Kütz.) Kylin from Muroran, Hokkaido, Japan, has been shown to exhibit four patterns of life history in culture. Sexual reproduction, reported fully for the first time in the genus, occurs in two of them. I. An isomorphic-heteromorphic complex in which erect, tubular sporophytes alternate with dioecious gametophytes of the same forms, with the irregular production by both phases of discoid or pulvinate (pincushion-like) microthalli capable of both sexual and asexual reproduction. II. An alternation of heteromorphic phases in which an erect, tubular sporophyte alternated irregularly with a gametophytic microthallus. III. An asexual alternation of heteromorphic phases in which an erect, tubular frond alternates irregularly with a microthallus by means of quadriflagellate zoospores. IV. An asexual, monophasic life cycle in which erect, tubular fronds are perpetuated by quadriflagellate zoospores. The first pattern occurred in spring populations from one of three sites. The second occurred in populations from two sites. The third and fourth occurred in all populations tested. The life history of Blidingia minima from Muroran is similar to that of Kornmannia zostericola from Muroran.     

From stowaways to karst‐aways: unloading the Peninsular Malaysia endemic Polyalthia brunneifolia (Annonaceae)

Detailed examination of specimens collected from limestone outcrops in Peninsular Malaysia and previously included in Polyalthia brunneifolia shows that they do not belong in this species. Three new species are described to accommodate these collections: Polyalthia chinii I.M.Turner & Utteridge from Bukit Serdam, Raub, Pahang; P. guabatuensis I.M.Turner & Utteridge from Batu Caves, Selangor, and P. guamusangensis I.M.Turner & Utteridge from Gua Musang, Kelantan. Conservation assessments are included for the new species and the general threats faced by species confined to limestone hills are discussed. In addition, an updated key to all species of Polyalthia known from Peninsular Malaysia is provided.     

<Emphasis Type="Italic">In vitro</Emphasis> conservation of European bryophytes

The use of in vitro techniques for conservation has been rising steadily since their inclusion in The Convention on Biological Diversity and The Global Strategy for Plant Conservation. Unfortunately, bryophytes are often overlooked in conservation initiatives, but they are important in a number of large-scale ecosystem processes, i.e. nutrient, water and carbon cycling. There is a long history of the use of tissue culture in cultivating bryophytes, and many species respond well to in vitro techniques. For 6 yr (2000–2006), The Royal Botanic Gardens, Kew and the UK statutory conservation agencies supported a project for the ex situ conservation of bryophytes. Living and cryopreserved collections of UK threatened species were successfully established and the cryopreserved collection continues to be maintained. Other in vitro conservation collections are maintained over Europe, at botanic gardens, museums and by individual university researchers, but there is no coherent European collection of bryophytes for conservation, or standardisation of techniques. A major issue for many in vitro collections is the maintenance of within species genetic diversity. Such diversity is considered to be important, as it is the basis by which populations of species can adapt to new conditions and evolve. We are proposing to establish a European network for in vitro conservation of bryophytes. We envisage that this will include living collections, cryopreserved collections and spore collections. Conservation of genetic diversity would be a priority and the collections would provide a valuable resource for conservation initiatives and support research into rare and threatened species.     

Taxonomic studies of planktic species of Anabaena based on morphological characteristics in cultured strains

Fifty (50) strains of planktic species of Anabaena (cyanobacteria), including collections from Japan and China and from different culture collections, were induced to form akinetes at low temperature (15 °C). Their morphologies were then observed and described. Fourty seven strains successfully formed akinetes and these were classified into 20 species comprising seven with straight trichomes and 13 with coiled trichomes. Three strains, which did not form akinetes, were separated into two taxonomic groups, but could not be identified to any described species. In addition, a key to the planktic species of Anabaena described in the study is presented.     

A 3-hydroxy-3-methylglutaryl-CoA synthase-based probe for the discovery of the acyltransferase-less type I polyketide synthases

Acyltransferase (AT)-less type I polyketide synthases (PKSs) produce complex natural products due to the presence of many unique tailoring enzymes. The 3-hydroxy-3-methylglutaryl coenzyme A synthases (HCSs) are responsible for β-alkylation of the growing polyketide intermediates in AT-less type I PKSs. In this study, we discovered a large group of HCSs, closely associated with the characterized and orphan AT-less type I PKSs through in silico genome mining, sequence and genome neighbourhood network analyses. Using HCS-based probes, the survey of 1207 in-house strains and 18 soil samples from different geographic locations revealed the vast diversity of HCS-containing AT-less type I PKSs. The presence of HCSs in many AT-less type I PKSs suggests their co-evolutionary relationship. This study provides a new probe to study the abundance and diversity of AT-less type I PKSs in the environment and microbial strain collections. Our study should inspire future efforts to discover new polyketide natural products from AT-less type I PKSs.     

Sexuality and Genetic Identity in the Agaricus Section Arvenses

Twelve wild collections and one commercial strain were used to characterize breeding systems and to develop molecular identities in the Arvenses section of the genus Agaricus, which includes the “horse mushroom” A. arvensis. Two morphotypes were identified based on macro- and micromorphological features. However, not all collections could be delimited by conventional taxonomic characters. Sequencing of the small subunit intergenic spacer (ITS) region (368 to 370 bp) of the rRNA genes clearly resolved the 13 collections into two clusters consistent with the identified morphotypes. Single-spore progenies and mating type testers were established and used to test intra- and interstock compatibility. The two compatibility groups identified were consistent with ITS clusters. Compatibility group I stocks readily interbred within the constraints of a unifactorial heterothallic system with a multiallelic mating type factor. Compatibility group II had a more restricted breeding pattern, and interactions were difficult to predict on the basis of mating type. Morphological data, ITS sequences, and the ability to interbreed suggest that these collections are part of a complex of interrelated species. Single-spore, homokaryotic isolates from both compatibility groups were able to fruit in compost culture, and two of the collections may represent natural homokaryotic fruiting. We conclude that species from the section Arvenses have versatile unifactorial heterothallic life cycles that permit both interbreeding and homokaryotic fruiting.     

HIGH LEVELS OF COLICIN RESISTANCE IN ESCHERICHIA COLI

Colicins are plasmid-encoded antibiotics that are produced by and kill Escherichia coli and other related species. The frequency of colicinogeny is high, on average 30% of E. coli isolates produce colicins. Initial observations from one collection of 72 strains of E. coli (the ECOR collection) suggest that resistance to colicin killing is also ubiquitous, with over 70% of strains resistant to one or more colicins. To determine whether resistance is a common trait in E. coli, three additional strain collections were surveyed. In each of these collections levels of colicin production were high (from 15 to 50% of the strains produce colicins). Levels of colicin resistance were even higher, with most strains resistant to over 10 colicins. A survey of 137 non-E. coli isolates revealed even higher levels of resistance. We discuss a mechanism (pleiotropy) that could result in the co-occurrence of such high levels of colicin production and colicin resistance.     

ASSESSING PHYLOGENETIC AFFINITIES AND SPECIES DELIMITATIONS IN KLEBSORMIDIALES (STREPTOPHYTA): NUCLEAR‐ENCODED rDNA PHYLOGENIES AND ITS SECONDARY STRUCTURE MODELS IN KLEBSORMIDIUM,HORMIDIELLA, AND ENTRANSIA1

Nuclear‐encoded SSU, group I intron, and internal transcribed spacer (ITS) rDNA sequences were obtained for 16 strains of green algae representing species of Klebsormidium, Hormidiella attenuata, and Entransia fimbriata (for taxonomic authorities, see Table S1 in the supplementary material). The SSU phylogeny resolved a well‐supported clade Klebsormidiales in the Streptophyta that comprised authentic Klebsormidium isolates described recently in a monograph by G. M. Lokhorst and various strains from culture collections. The H. attenuata and En. fimbriata pair was the sister group of Klebsormidium. Certain isolates from culture collections previously identified as “Klebsormidium” emerged as Trebouxiophyceae. Strains assigned to Koliella, Gloeotila, and Stichococcus previously allied with Klebsormidium because of shared morphological and ultrastructural characteristics also belonged to Trebouxiophyceae. Group I introns inserted at Escherichia coli position 516 were found in K. nitens and SAG strain 384‐1, and at position 1506 in H. attenuata and En. fimbriata. Introns were not observed in other Klebsormidiales. Unambiguous alignment of ITS regions of Klebsormidiales was only possible after thermodynamic folding had predicted eight conserved helical domains. The ITS phylogeny provided support for five of the morphospecies recognized by Lokhorst (K. flaccidum, K. elegans, K. bilatum, K. crenulatum, K. mucosum), but the sequences of K. dissectum, K. fluitans, and K. nitens formed an unresolved clade. The species with the earliest origin in the Klebsormidium phylogeny was K. flaccidum. The incongruence between Lokhorst’s morphology‐based cladograms and the ITS phylogenies demonstrated the need for a critical reappraisal of the taxonomy and the morphological and molecular species concept in Klebsormidium on the basis of a more extensive taxonomic and geographic sampling strategy.