Non-calcified warm-water marine macroalgae from the Ordovician strata of Spiti,Tethys Himalaya,India

The calcareous siltstones within the Ordovician section of the Takche Formation near Takche, Spiti region of Tethyan Himalaya, India, contain numerous specimens of non-calcified marine macroalgae in association with brachiopods, gastropods, tentaculitoids, and few trace fossils. The algal remains, representing five genera, are preserved as black or dark brown carbonaceous compression fossils, interpreted as warm-water marine macroalgae, namely, Inocladus sp., Callisphenus? sp., Algites sp. (siphonous algae), Fisherites sp., and Mastopora sp. (non-siphonous). Callisphenus is characterised by a radially symmetrical short pyriform thallus, with a central axis surrounded by short laterals whereas Inocladus sp. is characterised by an unsegmented simple thallus with internal parallel medullary siphons and cortical tubes. These algal remains, probably transported from a more near-shore living niche, co-occur with Cyclocrinitids, Tentaculitoids tube worms, trace fossils and brachiopods, suggesting that deposition of the studied units took place in low energy hydrodynamic conditions influenced by intermittent storm events. The study represents the first diversified macroalgal records from the Ordovician strata in the Tethyan realm of Indian subcontinent.     

Lower Permian bivalves from central Patagonia, Argentina

The earliest Permian faunal successions of central Patagonia show compositional changes that probably reflected the environmental warming at the end of the Gondwana glaciations. Bivalves of Asselian to probably Early Tastubian age are described. A new genus,Sueroa, is proposed to reunite a previously known species and a new species,Sueroa andreisi n. sp. Another five new species:Parallelodon? quichaurensis n. sp.,Heteropecten cortignasi n. sp.,Etheripecten saraviae n. sp.,Streblopteria montgomeryi n. sp. andPraeundulomya moreli n. sp. are described. Two previously known species:Malimania patagoniensis (González) andEuchondria sabattiniae González are revised and new occurrences are reported. A further eleven species are described, but they are left in open nomenclature being because they are insufficiently known; these are:Phestia? n. sp.,Modiolus sp.,Palaeoneilo sp.,Stutchburia sp.,Schizodus sp.,Vacunella? sp.,Edmondia sp.,Myonia? n. sp.,Myonia? sp. andPachymyonia? n. sp.     

Feasibility of Spectroscopic Characterization of Algal Lipids: Chemometric Correlation of NIR and FTIR Spectra with Exogenous Lipids in Algal Biomass

A large number of algal biofuels projects rely on a lipid screening technique for selecting a particular algal strain with which to work. We have developed a multivariate calibration model for predicting the levels of spiked neutral and polar lipids in microalgae, based on infrared (both near-infrared (NIR) and Fourier transform infrared (FTIR)) spectroscopy. The advantage of an infrared spectroscopic technique over traditional chemical methods is the direct, fast, and non-destructive nature of the screening method. This calibration model provides a fast and high-throughput method for determining lipid content, providing an alternative to laborious traditional wet chemical methods. We present data of a study based on nine levels of exogenous lipid spikes (between 1% and 3% (w/w)) of trilaurin as a triglyceride and phosphatidylcholine as a phospholipid model compound in lyophilized algal biomass. We used a chemometric approach to corrrelate the main spectral changes upon increasing phospholipid and triglyceride content in algal biomass collected from single species. A multivariate partial least squares (PLS) calibration model was built and improved upon with the addition of multiple species to the dataset. Our results show that NIR and FTIR spectra of biomass from four species can be used to accurately predict the levels of exogenously added lipids. It appears that the cross-species verification of the predictions is more accurate with the NIR models (R ²?=?0.969 and 0.951 and RMECV?=?0.182 and 0.227% for trilaurin and phosphatidylcholine spike respectively), compared with FTIR (R ²?=?0.907 and 0.464 and RMECV?=?0.302 and 0.767% for trilaurin and phosphatidylcholine spike, respectively). A fast high-throughput spectroscopic lipid fingerprinting method can be applied in a multitude of screening efforts that are ongoing in the microalgal research community.     

Nitrogen Limitation and Slow Drying Induce Desiccation Tolerance in Conjugating Green Algae (Zygnematophyceae,Streptophyta) from Polar Habitats

Background

Filamentous Zygnematophyceae are typical components of algal mats in the polar hydro-terrestrial environment. Under field conditions, they form senescent vegetative cells, designated as pre-akinetes, which are tolerant to desiccation and osmotic stress.

Key Findings

Pre-akinete formation and desiccation tolerance was investigated experimentally under monitored laboratory conditions in four strains of Arctic and Antarctic isolates with vegetative Zygnema sp. morphology. Phylogenetic analyses of rbcL sequences revealed one Arctic strain as genus Zygnemopsis, phylogenetically distant from the closely related Zygnema strains. Algae were cultivated in liquid or on solidified medium (9 weeks), supplemented with or lacking nitrogen. Nitrogen-free cultures (liquid as well as solidified) consisted of well-developed pre-akinetes after this period. Desiccation experiments were performed at three different drying rates (rapid: 10% relative humidity, slow: 86% rh and very slow); viability, effective quantum yield of PS II, visual and ultrastructural changes were monitored. Recovery and viability of pre-akinetes were clearly dependent on the drying rate: slower desiccation led to higher levels of survival. Pre-akinetes survived rapid drying after acclimation by very slow desiccation.

Conclusions

The formation of pre-akinetes in polar Zygnema spp. and Zygnemopsis sp. is induced by nitrogen limitation. Pre-akinetes, modified vegetative cells, rather than specialized stages of the life cycle, can be hardened by mild desiccation stress to survive rapid drying. Naturally hardened pre-akinetes play a key role in stress tolerance and dispersal under the extreme conditions of polar regions, where sexual reproduction and production of dormant stages is largely suppressed.     

Algal biomass anaerobic biodegradability

We conducted a series of biodegradation studies using microalgae (Arthrospira maxima and Nannochloropsis sp.) and macroalgae (Gelidium corneum and Cladophora glomerata) to elucidate algal biodegradability in wastewater sludge under anaerobic conditions. Algal biodegradability was evaluated according to ASTM D5210-92. The results indicate that A. maxima biodegraded to a greater extent (70 %) than Nannochloropsis sp. (40 %). The low level of mineralization for Nannochloropsis sp. is due to the presence of high level of lipids (37 %). For macroalgal samples, red algae fiber pulped from G. corneum biodegraded comparably to cellulose controls. However, C. glomerata biodegradation is about 46 %. A sample compositional analysis revealed that it contained about 24.5 % ash, which is directly accountable for an observed low degree of biodegradation. Algal anaerobic biodegradability is important to facilitate sludge digester design and performance evaluation. It is particularly useful when waste residual materials from algal biofuel processing are used for energy production.     

Dynamic succession of chickpea rhizobia over years and sampling sites in Xinjiang,China

Aims

Cyanobacterial and algal communities have a large effect on biocrust formation and development. Biocrust species and abundance vary spatially and temporally due to different environmental factors. The relationships among cyanobacterial and algal communities, and biocrust function have been studied extensively. Lacking, however, are studies of temporal changes in a similar landscape where environmental conditions are similar, but where biocrust formation is different.

Methods

Biocrusts of different ages were located in the Loess Plateau in an area that had experienced a landslide. We examined changes in cyanobacterial and algal communities, carbon, nutrients, and the composition of dissolved organic matter in the topsoil, and the relationships among the community and soil characteristics using redundancy analysis.

Results

Phormidium tenue (Cyanophyta) dominated in all biocrusts, and co-dominated in a newly formed crust with Euglena sp. (Euglenophyta). Oscillatoria sp. (Cyanophyta) increased with biocrust age. Oscillatoria was positively correlated with carbon fixation and nutrient (nitrogen and phosphorus) accumulation in topsoils.

Conclusions

While incubation of Phormidium tenue and Euglena sp. is suggested for rapid biocrust formation at an early stage, increasing the abundance of Phormidium tenue and Oscillatoria sp. can promote carbon fixation and nutrient (nitrogen and phosphorus) accumulation, thereby accelerating biocrusts into a later stage.

     

Behavior,activities, and effects of bacteria on synthetic quartz monocrystal surfaces

Two strains ofBacillus sp. and a strain ofBrevibacterium sp., originally isolated from a natural quartzite surface, were characterized and employed as test strains with several methods: acridine orange fluorochromation and epifluorescence microscopy were used for detection of individual cells; scanning and transmission microscopy for studying attachment behavior; replica techniques in combination with electron microscopy for following surface interaction effects; and chemical analysis of SiO₂ for detecting possible silica leaching activities. The experimental results clearly showed that the three test strains were able to attach to and grow on the precleaned quartz surfaces. Attachment modes were either by direct sorption mechanisms (Brevibacterium sp. S) or the production of adhesive polymers (Bacillus sp. U andBacillus sp. W). In short-term contact incubation experiments with rich media, neither quartz crystal surface structures nor bacterial cell surfaces appeared to be changed. Likewise, significant biochemical dissolution and mechanical dislocation of SiO₂ (which would have indicated rapid bacterial weathering activities) could not be detected. The importance of quartz purity and crystalline structure for the initiation of weathering processes is discussed.     

Aerobic biodegradation and detoxification of wastewaters from the olive oil industry

Growth and polyphenol biodegradation by three microorganisms namely Geotrichum sp., Aspergillus sp. and Candida tropicalis were studied on olive mill wastewater (OMW). These three microorganisms were selected for their tolerance to the polyphenols. The biodegradation process of OMW was investigated in batch regime by conducting experiments where the initial concentration of chemical oxygen demand (COD) was varied. Furthermore, some tests were performed to determine the most important nutrients necessary for aerobic degradation of OMW. Average COD removals were 55.0%, 52.5% and 62.8% in wastewaters fermented with Geotrichum sp., Aspergillus sp. and C. tropicalis, respectively. The maximum removal of polyphenols was 46.6% (Geotrichum sp.), 44.3% (Aspergillus sp.) and 51.7% (C. tropicalis). In addition, significant decolorization was evident.     

DNA BARCODING IS A POWERFUL TOOL TO UNCOVER ALGAL DIVERSITY: A CASE STUDY OF THE PHYLLOPHORACEAE (GIGARTINALES,RHODOPHYTA) IN THE CANADIAN FLORA1

Previous studies have established that the 5′ end of the mitochondrial gene COI (cytochrome oxidase subunit I) is useful for rapid and reliable identification of red algal species and have demonstrated that our understanding of red algal biodiversity and biogeography is fragmentary. In this context, we are completing a thorough sampling along the Canadian coast and using the DNA barcode for the assignment of collections to genetic species to explore algal diversity in the Canadian flora. In the present study, we provide results regarding diversity of members of the red algal family Phyllophoraceae. We have analyzed 354 individuals from the Arctic, Atlantic, and Pacific coasts of Canada, as well as 26 specimens from the USA, Europe, and Australia, resolving 29 species based on the analyses of the DNA barcode. Twenty‐three of these genetic species were present in Canada where only 18 species are currently recognized, including Ceratocolax hartzii Rosenv., which was in the same genetic species group as its host Coccotylus truncatus (Pall.) M. J. Wynne et N. J. Heine and is thus transferred to Coccotylus, C. hartzii (Rosenv.) comb. nov., but retained as a distinct species owing to its unique habit and phenology. Our results revealed the presence of cryptic diversity within the genera Coccotylus, Mastocarpus, Ozophora, and Stenogramme, for which we resurrect Coccotylus brodiei (Turner) Kütz. and describe Mastocarpus pachenicus sp. nov., Ozophora lanceolata sp. nov., and Stenogramme bamfieldiensis sp. nov., leaving a multitude of unnamed Mastocarpus spp. in need of further taxonomic study. In addition, we report range extensions into British Columbia of Besa papillaeformis Setch., previously known only from its type and nearby localities in California; Gymnogongrus crenulatus (Turner) J. Agardh, recorded only from the Atlantic; and Stenogramme cf. rhodymenioides Joly et Alveal, previously only known from South America. Finally, the phylogenetic affinities of the Canadian species of Phyllophoraceae characterized in this study were investigated using LSU rDNA, RUBISCO LSU (rbcL), and combined analyses.     

Lower Carboniferous (middle Visean) foraminifers and algae from an interior sea,Southern Carnarvon Basin,Australia

A moderate diversity biota of foraminifers, algae and calcareous microproblematica is recorded from the Lower Carboniferous Yindagindy Formation within the intracratonic Southern Carnarvon Basin in Western Australia. Very shallow metahaline to hypersaline conditions are suggested. The palaeobotanical components are sporadic calcitarcha, tuberitinaceans, codiaceans Orthriosiphon? sp. 1, dasycladaleans? Koninckopora tenuiramosa, and algosponges Issinella devonica, Serrisinella cf. serrensis, Issinella? sp. 1, Kamaena cf. awirsi, Proninella? sp. and Stacheoides spp. The foraminiferal assemblage is dominated by a new koktjubinid taxon: Praekoktjubina yindagindyensis nov. gen., nov. sp. Subordinate associated foraminifers are more sporadic Salpingothurammina? sp. 1, Plectinopsis michelseni nov. gen., nov. sp., Rectopravina multifida nov. gen., nov. sp. (with 4 morphotypes), and scarce Endothyra spp. Despite many of these taxa being endemic, a middle Visean age is probable, based on: (1) the maximum global geographic extent of K. tenuiramosa reached during the middle Visean, (2) the disappearance of Plectinopsis nov. gen. in Palaeotethys and the Urals, and (3) the first occurrence of Praekoktjubina nov. gen. in Palaeotethys. An age no older than the middle Visean is supported by sparse conodonts from the Formation and comparison to episodes of carbonate deposition in the Bonaparte Basin, further north in the East Gondwana rift system. Absence of middle Visean archaediscoids may be due to high salinity. The following algal and foraminiferal families and superfamilies are emended: Scribroporellaceae (a lectotype is selected for Orthriosiphon saskatchewanense); Palaeospiroplectamminidae (due to the creation of Plectinopsis nov. gen.); Haplophragminoidea (due to the creation of Rectopravina nov. gen.); and Globivalvulinoidea and Koktjubinidae (due to the creation of Praekoktjubina nov. gen.).     

Complex female genitalia indicate sperm dumping in armored goblin spiders (Arachnida,Araneae, Oonopidae)

In promiscuous females, sperm ejection from the sperm storage site can be a strong mechanism to influence sperm priority patterns. Sperm dumping is reported from different animals including birds, insects, and humans. In spiders, it has been documented for four species including the oonopid Silhouettella loricatula. Oonopidae are a diverse spider family comprising many species with peculiar female genitalia. Especially in species where studies of mating behavior are difficult, morphological investigations of the genitalia help to understand their function and evolution. In the present study, the genitalia of the oonopids Myrmopopaea sp., Grymeus sp., and Lionneta sp. are investigated by means of histological serial sections and scanning electron microscopy (SEM). The results are compared with previous findings on S. loricatula. In Myrmopopaea sp. and Grymeus sp., the same morphological components are present that are involved in sperm dumping in S. loricatula. Inside the receptaculum, sperm are enclosed in a secretory sac which can be moved to the genital opening and dumped during copulation by muscle contractions. The female genitalia of Lionneta sp. are asymmetric. They show the same characteristics as S. loricatula but all the investigated females were unmated. The results strongly suggest that sperm dumping occurs in Myrmopopaea sp., Grymeus sp., and Lionneta sp. and happens by the same mechanism as in S. loricatula. Sperm dumping might even be common within a clade of oonopids. As in S. loricatula, the sperm transfer forms in the investigated species consist of several spermatozoa. Papillae with unknown function occur on the receptacula of all females.     

Current velocity influences the facilitation and removal of algae by stream grazers

The modification of flows in lotic ecosystems can have dramatic effects on abiotic and biotic processes and change the structure of basal trophic levels. In high-gradient streams, most of the biota are benthic, and decreased flow may homogenize and reduce benthic current velocity, potentially changing stream ecosystem function. Grazing by macroinvertebrates is an important component of stream function because grazers regulate energy flow from primary producers to higher trophic levels. We conducted an experiment to examine how macroinvertebrate grazers facilitated or removed algal biomass across a gradient of benthic current velocity (0–40 cm s^?1). We chose three grazers (Drunella coloradensis, Cinygmula spp., and Epeorus deceptivus) from a montane stream and conducted our experiment using 24 artificial stream channels that had three treatments: no grazers (control), single-grazer, and combined-grazer treatments. In the absence of grazers, algal biomass increased with benthic current velocity. Grazer treatments differed from the control in that more algal biomass was removed at higher velocities, whereas algal accrual was largely facilitated at low velocities. The transition from facilitation to removal ranged from 4.5 to 5.9 cm s^?1 for individual grazer treatments and occurred at 11.7 cm s^?1 for the combined-grazer treatment. Our data suggest that velocity plays a significant role in the facilitation and removal of algae by macroinvertebrate grazers. Additionally, the patterns revealed here could have general implications for algal accrual in systems where flow is reduced.     

Factors Influencing Algae–Clay Aggregation

The dumping of bauxite tailings on a clear-water Amazonian lake caused a significant decrease in phytoplankton densities. The influence of these suspended clay particles on algal sinking, through algae–clay aggregation, was investigated under laboratory conditions, by measuring fluctuations in algal population densities over time, with different suspended clay concentrations. The population densities of the four algal species tested, Phormidium amoenum, Mougeotia sp., Staurodesmus convergens and Chlorella sp., were decreased by the algae–clay aggregation. The extent of this process was dependent on algal morphological characteristics such as size and shape, as well as on the concentration of suspended clay particles.     

Cyanobacteria inhabiting biological soil crusts of a polar desert: Sør Rondane Mountains,Antarctica

Molecular and morphological methods were applied to study cyanobacterial community composition in biological soil crusts (BSCs) from four areas (two nunataks and two ridges) in the Sør Rondane Mountains, Antarctica. The sampling sites serve as control areas for open top chambers (OTCs) that were put in place in 2010 at the time of sample collection and will be compared with BSC samples taken from the OTCs in the future. Cyanobacterial cell biovolume was estimated using epifluorescence microscopy, which revealed the dominance of filamentous cyanobacteria in all studied sites except the Utsteinen ridge, where unicellular cyanobacteria were the most abundant. Cyanobacterial diversity was studied by a combination of molecular fingerprinting methods based on the 16S rRNA gene (denaturing gradient gel electrophoresis (DGGE) and 454 pyrosequencing) using cyanobacteria-specific primers. The number of DGGE sequences obtained per site was variable and, therefore, a high-throughput method was subsequently employed to improve the diversity coverage. Consistent with previous surveys in Antarctica, both methods showed that filamentous cyanobacteria, such as Leptolyngbya sp., Phormidium sp. and Microcoleus sp., were dominant in the studied sites.In addition, the studied localities differed in substrate type, climatic conditions and soil parameters, which probably resulted in differences in cyanobacterial community composition. Furthermore, the BSC growing on gneiss pebbles had lower cyanobacterial abundances than BSCs associated with granitic substrates.     

The effect of high pH on structural lipids in diatoms

We tested the hypothesis that increased pH reduces the amount of structural lipids. To do this, we used three different diatoms (Phaeodactylum tricornutum CCAP strain, P. tricornutum TV strain and Amphiprora sp). We tested the effect of rapid increase from pH?7.5 to 10 by adding NaOH. The total lipid content was reduced by 13, 36 and 47 % in the P. tricornutum CCAP strain, TV strain and Amphiprora sp., respectively, 1 h after increasing the pH. The P. tricornutum CCAP strain was used for further testing the effect of pH on the lipid content during active growth. This strain was cultivated at pH?7.5 and 10, and the pH was regulated by the CO₂ inflow. The growth rate was similar (0.3 day^?1) in both pH treatments, but the lipid content in the pH?10 treatment was on average 28 % lower than in the pH?7.5 treatment. Our data support the hypothesis that structural lipids are reduced when pH increases to high levels. The results suggest that regulating the pH during algae cultivation could be used to refine the lipid composition in the harvested algal biomass.     

Non-calcified macroalgae from the lower Famennian (Upper Devonian) of the Holy Cross Mountains,Poland

Non-calcified algal remains were collected from the lower Famennian deposits at the Kowala quarry in the Holy Cross Mountains, central Poland. Each specimen is represented solely by vegetative organs. On the basis of the material collected, a new algal genus and species has been formally erected. Vittella dixii nov. gen., nov. sp. (Order ?Bryopsidales) includes thalli consisting of long bundles of hair-like filament structures arranged in parallel fashion to the thallus length. Some other algal remains are regarded as Inocaulis-like forms. They possess long, flat blades with entire margins, and are ornamented with very dense, hair-like projections. The rest of the specimens found so far has been illustrated and tentatively classified as probably belonging to either Bryopsidales or Dasycladales algae. The exceptional preservation of the non-calcified algal thalli investigated suggests that special taphonomic conditions have prevailed during sedimentation of the lower part of the Famennian Kowala section. These may have involved rather rapid burial in oxygen-restricted (dysoxic and anoxic) sea-bottom environment, inhibiting the activities of scavengers and bioturbators, as well as oxidative degradation. The preservation of the algae, together with sedimentological and geochemical characteristics of the host rocks indicate that they rather represent parautochthonous assemblage, buried close to their natural habitat.     

Environmental Factors Affect Acidobacterial Communities below the Subgroup Level in Grassland and Forest Soils

In soil, Acidobacteria constitute on average 20% of all bacteria, are highly diverse, and are physiologically active in situ. However, their individual functions and interactions with higher taxa in soil are still unknown. Here, potential effects of land use, soil properties, plant diversity, and soil nanofauna on acidobacterial community composition were studied by cultivation-independent methods in grassland and forest soils from three different regions in Germany. The analysis of 16S rRNA gene clone libraries representing all studied soils revealed that grassland soils were dominated by subgroup Gp6 and forest soils by subgroup Gp1 Acidobacteria. The analysis of a large number of sites (n = 57) by 16S rRNA gene fingerprinting methods (terminal restriction fragment length polymorphism [T-RFLP] and denaturing gradient gel electrophoresis [DGGE]) showed that Acidobacteria diversities differed between grassland and forest soils but also among the three different regions. Edaphic properties, such as pH, organic carbon, total nitrogen, C/N ratio, phosphorus, nitrate, ammonium, soil moisture, soil temperature, and soil respiration, had an impact on community composition as assessed by fingerprinting. However, interrelations with environmental parameters among subgroup terminal restriction fragments (T-RFs) differed significantly, e.g., different Gp1 T-RFs correlated positively or negatively with nitrogen content. Novel significant correlations of Acidobacteria subpopulations (i.e., individual populations within subgroups) with soil nanofauna and vascular plant diversity were revealed only by analysis of clone sequences. Thus, for detecting novel interrelations of environmental parameters with Acidobacteria, individual populations within subgroups have to be considered.     

Reproductive Strategies of the Insidious Fish Ectoparasite,Neobenedenia sp. (Capsalidae: Monogenea)

Fish monogeneans are lethal parasites in aquaculture. We provide the first experimental evidence that a notorious fish monogenean, Neobenedenia sp., can produce viable eggs in isolation for three consecutive generations. We infected individual, isolated, farmed barramundi, Lates calcarifer (Bloch) with a single oncomiracidium (larva) of the hermaphroditic monogenean Neobenedenia sp. Isolated parasites reached sexual maturity at day 10 post-hatch (24°C, 35‰) and laid ∼3,300 embryonated eggs over 17 days. Egg production rapidly increased following sexually maturity on day 10 (58±15 eggs) and peaked on day 15 (496±68 eggs) before gradually decreasing. Neobenedenia sp. exhibited egg laying and egg hatching rhythms. Parasites laid eggs continuously, but egg production increased in periods of darkness (64.3%), while the majority of oncomiracidia (81%) emerged from eggs in the first three hours of light. Eggs laid by isolated ‘parent’ parasites hatched and individual emerging oncomiracidia were used to infect more individual, isolated fish, with three consecutive, isolated, parasite generations (F1, F2 and F3) raised in the laboratory. Infection success and egg hatching success did not differ between generations. Our data show that one parasite, in the absence of a mate, presents a severe threat to captive fish populations.     

Studies on epiphytic flora of a tropical rain forest in Southwestern Nigeria

Bark microflora of 12 rainforest trees were examined. Crustose, foliose, and fruticose forms of lichens were observed. Bacillus sp., Erwinia sp., Micrococcus sp., Proteus sp., and Pseudomonas sp. were the five genera of bacteria recorded while three genera of Cyanobacteria; Entophysalis, Gleocapsa and Stigonema were observed. In the algal division, three genera of Chlorophyta found are Chlorococcum, Pleurococcus and Physolinum. Only one diatom, Cocconeis sp. was present on just one tree. Most of the epiphytic microflora found are mainly terrestrial and their spores might have been deposited on the barks by air, or dust-currents. While moisture is regarded as the most critical factor in growth of bark microflora, other factors like texture of the bark, insolation and especially chemical characteristics of the barks may play a key role in occurrence and distribution of micro-organisms on them.     

Eukaryote Culturomics of the Gut Reveals New Species

The repertoire of microeukaryotes in the human gut has been poorly explored, mainly in individuals living in northern hemisphere countries. We further explored this repertoire using PCR-sequencing and culture in seven individuals living in four tropical countries. A total of 41 microeukaryotes including 38 different fungal species and three protists were detected. Four fungal species, Davidiella tassiana, Davidiella sp., Corticiaceae sp., and Penicillium sp., were uniquely detected by culture; 27 fungal species were uniquely detected using PCR-sequencing and Candida albicans, Candida glabrata, Trichosporon asahii, Clavispora lusitaniae, Debaryomyces hansenii, Malassezia restricta, and Malassezia sp. were detected using both molecular and culture methods. Fourteen microeukaryotes were shared by the seven individuals, whereas 27 species were found in only one individual, including 11 species in Amazonia, nine species in Polynesia, five species in India, and two species in Senegal. These data support a worldwide distribution of Malassezia sp., Trichosporon sp., and Candida sp. in the gut mycobiome. Here, 13 fungal species and two protists, Stentor roeseli and Vorticella campanula, were observed for first time in the human gut. This study revealed a previously unsuspected diversity in the repertoire of human gut microeukaryotes, suggesting spots for further exploring this repertoire.