Biogeographic patterns of the East African coastal forest vertebrate fauna

The archipelago-like coastal forest of East Africa is one of the highest priority ecosystems for biodiversity conservation worldwide. Here we investigate patterns of species richness and biogeographic distribution among birds, mammals and reptiles of these forests, using distribution data obtained from recently published reviews and information collated by the WWF Eastern Africa Coastal Forest Ecoregion Programme. Birds and mammals species were divided into forest specialists and generalists, and forest specialist reptiles into ‘coastal’ and ‘forest’ endemics. The species richness of birds and generalist mammals increased with area, and is probably a result of area-dependent extinction. Only in birds, however, species richness increased with decreasing isolation, suggesting possible isolation-dependent colonization. Forest diversity, associated to altitudinal range, is important for specialist birds and mammals, whose species richness increased with wider altitudinal range. The number of relict coastal endemic and forest endemic reptiles was higher in forests with wider altitudinal ranges and on relatively higher altitude, respectively. Such forests have probably provided a suitable (and perhaps stable) environment for these species through time, thus increasing their persistence. Parsimony analysis of distributions (PAD) and cluster analyses showed geographical distance and general ecological similarity among forests as a determinant factor in bird distribution patterns, with compositional similarity decreasing with increasing inter-forest distance. Compositional similarity patterns of mammals among the forests did not show a strong geographical correspondence or a significant correlation with inter-forest distance, and those of reptiles were not resolved, with very low similarity levels among forest faunas. Our results suggest that the relative importance (and causal relationship) of forest attributes affecting the distribution of the East African coastal forest vertebrate fauna varies depending on life history traits such as dispersal ability and forest specialization. The groupings in PAD are partly congruent with some of the previous classifications of areas of endemism for this region, supporting the ‘naturalness’ of these regions.     

Global diversity of Isopod crustaceans (Crustacea; Isopoda) in freshwater

The isopod crustaceans are diverse both morphologically and in described species numbers. Nearly 950 described species (∼9% of all isopods) live in continental waters, and possibly 1,400 species remain undescribed. The high frequency of cryptic species suggests that these figures are underestimates. Several major freshwater taxa have ancient biogeographic patterns dating from the division of the continents into Laurasia (Asellidae, Stenasellidae) and Gondwana (Phreatoicidea, Protojaniridae and Heterias). The suborder Asellota has the most described freshwater species, mostly in the families Asellidae and Stenasellidae. The suborder Phreatoicidea has the largest number of endemic genera. Other primary freshwater taxa have small numbers of described species, although more species are being discovered, especially in the southern hemisphere. The Oniscidea, although primarily terrestrial, has a small number of freshwater species. A diverse group of more derived isopods, the ‘Flabellifera’ sensu lato has regionally important species richness, such as in the Amazon River. These taxa are transitional between marine and freshwater realms and represent multiple colonisations of continental habitats. Most species of freshwater isopods species and many genera are narrow range endemics. This endemism ensures that human demand for fresh water will place these isopods at an increasing risk of extinction, as has already happened in a few documented cases. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users. Guest editors: E. V. Balian, C. Lévêque, H. Segers & K. Martens Freshwater Animal Diversity Assessment     

Methodologies for measuring and modelling change in coastal saline lagoons under historic and accelerated sea-level rise,Suffolk coast,eastern England

Thorough assessment of vulnerable coastal habitats, impacted by sea-level rise and anthropogenic pressures, requires both the accurate establishment of the evidence base for current status and scientifically-informed forward planning of expected future status. Coastal saline lagoons are transitional, ephemeral habitats of considerable conservation interest; under European legislation their status requires on-going maintenance of ‘favourable status’. Over decadal timescales, the seaward barriers that enclose saline lagoons migrate progressively landwards. Geo-referenced and digitised historic maps and aerial photographs are used to create a detailed trajectory of barrier migration and loss of lagoon area for three saline ‘broads’ on the rapidly retreating coastline of Suffolk, eastern England. The SCAPE shoreline response model is then employed to extend this trajectory, under a range of sea-level rise scenarios, to 2050 and 2095 and to predict saline lagoon ‘time to extinction’. Loss rates are likely to accelerate considerably after 2015 and a fundamental revision of UK saline lagoon creation targets is urgently required. The approach is generic and could be used to assess the evolutionary trajectories for other vulnerable coastal habitats, under a range of near-future environmental change scenarios.     

Taxonomy of Australian freshwater algae. I. The genus Micrasterias in South-Eastern Australia

A preliminary survey has been made of the desmid genus Micrasterias in Tasmania, as the first part of an intended series of detailed investigations of Tasmanian freshwater algae. For comparative purposes, samples from the south-eastern states of mainland Australia are included. Micrasterias hardyi West, apparently an Australian endemic, is discussed in detail and M. tropica var. indivisa (Nordst.) Eichl. et Racib., formerly known only from New Zealand, is figured from Tasmania. Some other Micrasterias forms are readily accommodated within the existing nomenclature. Others, however, have been uncertainly allied with existing taxa in keeping with a policy of not adding to the burden of nomenclature until a biological concept of species has been developed for the desmids. The taxonomy of Australian representatives of the genus Micrasterias is discussed against this background.     

Assessment of bioinvasion impacts on a regional scale: a comparative approach

This paper presents an overall bioinvasion impact assessment on the scale of a large marine region—the Baltic Sea, as defined by the Helsinki Commission. The methodology is based on a classification of the abundance and distribution range of alien species and the magnitude of their impacts on native communities, habitats and ecosystem functioning aggregated in a “Biopollution Level” index (BPL) which ranges from ‘no impact’ (BPL = 0) to ‘massive impact’ (BPL = 4). The assessment performed for nine Baltic sub-regions revealed that documented ecological impact is only known for 43 alien species out of 119 registered in the Sea. The highest biopollution (BPL = 3, strong impact) occurs in coastal lagoons, inlets and gulfs, and the moderate biopollution (BPL = 2)—in the open sea areas. The methodology was also used to classify species into alien (BPL = 0) versus ‘impacting’ species (BPL > 0), which can be divided into ‘potentially invasive’ (BPL = 1) and ‘invasive’ (BPL > 1) ones. No clear correlation between the number of established alien and impacting species was found in the sub-regions of the Baltic Sea. The methodology, although requiring a substantial research effort, proved to be useful for interregional comparisons and evaluating the bioinvasion effects of individual alien species.     

Estimates of species diversity of free-living marine isopod crustaceans on coral reefs

 A core group of isopod crustacean genera appears to be present at many coral reef sites. Within these genera, however, species show high local endemicity. Based on the estimated percentage of endemism for the Atlantic (19% for individual sites, 90% for the tropical western Atlantic as a unit), the Indian Ocean (50%), the eastern-central Pacific (80%), and the western Pacific (40%), it is estimated that there are some 5,000 to 13,000 isopod species in the world’s coral reefs, and that some 2,000 to 6,000 of these are endemics. (At present, approximately 4,400 species of marine and 560 species of freshwater isopods have been described.) Based on the crudely estimated relative abundances of other peracaridan crustaceans in coral reefs (compared to isopods), the total diversity of reef amphipods, tanaidaceans, cumaceans, and mysidaceans is approximately 54,500 species. Accepted: 29 August 1997     

Global diversity of gastropods (Gastropoda; Mollusca) in freshwater

The world’s gastropod fauna from continental waters comprises ∼4,000 valid described species and a minimum of 33–38 independent lineages of Recent Neritimorpha, Caenogastropoda and Heterobranchia (including the Pulmonata). The caenogastropod component dominates in terms of species richness and diversity of morphology, physiology, life and reproductive modes and has produced several highly speciose endemic radiations. Ancient oligotrophic lakes (e.g., Baikal, Ohrid, Tanganyika) are key hotspots of gastropod diversity; also noteworthy are a number of lower river basins (e.g., Congo, Mekong, Mobile Bay). But unlike many other invertebrates, small streams, springs and groundwater systems have produced the most speciose associations of freshwater gastropods. Despite their ecological importance in many aquatic ecosystems, understanding of even their systematics is discouragingly incomplete. The world’s freshwater gastropod fauna faces unprecedented threats from habitat loss and degradation and introduced fishes and other pests. Unsustainable use of ground water, landscape modification and stock damage are destroying many streams and springs in rural/pastoral areas, and pose the most significant threats to the large diversity of narrow range endemics in springs and ground water. Despite comprising only ∼5% of the world’s gastropod fauna, freshwater gastropods account for ∼20% of recorded mollusc extinctions. However, the status of the great majority of taxa is unknown, a situation that is exacerbated by a lack of experts and critical baseline data relating to distribution, abundance, basic life history, physiology, morphology and diet. Thus, the already considerable magnitude of extinction and high levels of threat indicated by the IUCN Red List of Threatened Species is certainly a significant underestimate. Guest editors: E. V. Balian, C. Lévêque, H. Segers and K. Martens Freshwater Animal Diversity Assessment     

4. Geographic distribution of freshwater blue-green algae

The analysis of the currently available data for morphologically unambiguously defined freshwater blue-green algae indicates that besides (sub-)cosmopolitan species, taxa with a more restricted distribution also exist. Many of these have a holarctic or pantropic distribution. It is hypothesized that, besides the distribution of ecological niches, temperature is one of the main controlling factors restricting species to particular latitudinal zones. Furthermore, the presence of species with a regional distribution (endemics) can not be ruled out, indicating that other factors must be considered. The possible role of dispersal capacities and of dispersal rates in relation to the earth history and to the speciation of blue-green algae is discussed.     

Country-based patterns of total species richness,endemicity, and threatened species richness in African rodents and insectivores

Country-based patterns of total species richness, endemicity, and threatened species richness in African rodents and insectivores are studied in this paper. We found several patterns which were similar between insectivores and rodents. Indeed, in both groups we observed: (i) a significantly uneven distribution of species richness across countries and geographic regions with highest species richness peaks being in Middle Africa and lowest peaks in Northern Africa, (ii) species richness increasing with rainfall but being independent on a country’s surface area, (iii) in each country, the insectivore total species richness and endemic species richness increases were positively correlated with rodent total species richness and endemic species richness increases. However, number of endemics peaked in South Africa and D.R. Congo in both groups, but also in Tanzania for Insectivores and in Ethiopia for rodents. In addition, the highest numbers of threatened species occurred in D.R. Congo, Rwanda and Uganda for rodents and in South Africa, Tanzania and Cameroon for insectivores. The conservation implications of these results were discussed.     

An assessment of animal species diversity in continental waters

There is a need for monitoring the status and trends of freshwater biodiversity in order to quantify the impacts of human actions on freshwater systems and to improve freshwater biodiversity conservation. Current projects carrying assessment of freshwater biodiversity focus mainly on leading-better-known groups such as fish, or identify keystone species and/or endemic freshwater systems for conservation purposes. Our purpose is to complete these existing projects by providing quantitative estimates of species number for all freshwater groups on each continent and/or major eco-regions. This article present the results of the first implementation phase carried out from September 2002 to June 2003 and which addressed only freshwater animal species. The project consisted of: (1) compiling existing data from literature, web sites and museum collections; (2) contacting scientific experts of each group to provide a ‘to the best of their knowledge, estimates of species numbers. In this study, we consider as true freshwater species, those that complete part or all of their life cycle in freshwater, and water-dependant species those that need freshwater for food or that permanently use freshwater habitats. The current order of magnitude for known freshwater animal species world wide is 100 000, of which half are insects. Among other groups, there are some 20 000 vertebrate species; 10 000 crustacean species and 5000 mollusc species that are either true freshwater or water-dependant species. The study highlighted gaps in the basic knowledge of species richness at continental and global scales: (1) Some groups such as Protozoa, nematodes or annelids have been less studied and data on their diversity and distribution is scarce. Because current richness estimates for these groups are greatly biased by knowledge availability, we can expect that real species numbers might be much higher. (2) Continents are not equal in the face of scientific studies: South America and Asia are especially lacking global estimates of species richness for many groups, even for some usually well-known ones such as molluscs or insects. The second phase of the project will address freshwater plants and algae. The present status should be considered as a first sketch of the global picture of freshwater biodiversity. We hope that this project will initiate interactive exchange of data to complete and update this first assessment.     

China Subregional Avian Endemism and Biodiversity Conservation

Richness of endemic species is considered important for biodiversity conservation and avifaunal regionalization, but no detailed studies concerning the subregional endemism have yet been done in China. Here we investigate the assemblage of China avian endemics of each avifaunal subregion, and analyze the faunal subregional species diversity, subspecific differentiation, and their relationships. The endemic species richness is found to be the highest in the Southwest Mountainous subregion where 60 species account for 57.1% of China’s 105 endemics. Seventy seven species accounting for 73.3% are monotypic. Twenty eight species (26.7%) occurred in only one subregion; the mean was 3.14±1.929 subregions, while 3 species were found widespread over 8 subregions. The number of species distributed only at one specific subregion (EOSR) is the highest in Taiwan subregion. The Southwest Mountainous subregion has the second highest EOSR and the highest richness of monotypic species, but the ratio of numbers of monotypic species or EOSR to the numbers of its subregional overall endemic species is not high in this subregion (68.3%; 10.0%). On the contrary, Taiwan subregion does not have higher richness of overall endemic species and monotypic species, but the EOSR is the highest, while the ratio of numbers of monotypic species or EOSR to the numbers of its subregional overall endemic species is also the highest among all subregions (76.2%; 71.4%). From the evidence of comparing subregional distribution of overall endemic species, EOSR, monotypic species and subspecific diversification, we may conclude that geographical isolation might be the main effect factor contributing to both subspecific diversification and avian subregional endemism in China. The higher endemic and monotypic richness in the Southwest Mountainous subregion may also indicate that the subregion’s avifaunal evolutionary and ecological isolation results from the highly diversified habitats and geographical environments as well as the historical effects from the primitive avifauna.     

The fate of organic matter sources in coastal environments: a comparison of three Mediterranean lagoons

Trophic processes in coastal lagoons are strongly influenced by freshwater inputs and water exchanges with the sea. In recent years, stable isotope analysis has become a widespread and reliable method for the examination of trophic structure over time and space, also in complex ecosystems such as coastal lagoons. Stable isotopes of carbon and nitrogen were studied in primary producers and consumers to identify organic matter source pools from terrestrial, benthic and pelagic environments and to characterise the trophic structure in three Mediterranean coastal lagoons (Lake Fusaro, the Lake of Sabaudia and Stagnone di Marsala). The results highlighted the negligible importance of terrestrial production to higher trophic levels in all the ecosystems investigated. Consumer dependence on benthic and pelagic organic matter showed high variability: overall macroalgae were at the base of the food web in Lake Fusaro and the Lake of Sabaudia, while mixed sources (seagrass detritus, epiphytes, macroalgae and sedimentary organic matter) appeared to be the major baseline food resource in the Stagnone di Marsala. We have found evidence for significant changes in the trophic structure in these Mediterranean coastal lagoons and such differences may be triggered by differential environmental features (e.g. freshwater inputs and hydrodynamic regime). Guest editors: A. Razinkovas, Z. R. Gasiūnaitė, J. M. Zaldivar & P. Viaroli European Lagoons and their Watersheds: Function and Biodiversity     

Effects of NaCl stress on proline and cation accumulation in salt sensitive and tolerant turfgrasses

Summary Concentrations of proline, sodium and potassium in shoot tissues of five turfgrass species were measured following exposure to 170 mM NaCl salinity stress. Salt tolerant ‘Fults’ alkaligrass and ‘Dawson’ red fescue restricted the accumulation of Na-ions to significatnly low levels compared to the salt sensitive Kentucky bluegrasses (‘Adelphi’ and ‘Ram I’) and ‘Jamestown’ red fescue. Accumulation of proline began in all species within 24 h of initiation of salt stress but at a more rapid rate and higher overall concentration for ‘Fults’ alkaligrass. Proline levels were variable and too low in relation to sodium accumulations to have any significant osmoregulatory role in salt tolerance among all cultivars tested with the possible exception of alkaligrass.     

A review of the influence of biogeography,riverine linkages,and marine connectivity on fish assemblages in evolving lagoons and lakes of coastal southern Africa

The Holocene evolution of eight South African coastal lakes and lagoons is examined and related to changes in fish composition over that period. Historical and current connectivity with riverine and marine environments are the primary determinants of present‐day fish assemblages in these systems. A small and remarkably consistent group of relict estuarine species have persisted in these coastal lakes and lagoons. The loss or reduction of connectivity with the sea has impacted on the diversity of marine fishes in all eight study systems, with no marine fishes occurring in those water bodies where connectivity has been completely broken (e.g. Sibaya, Groenvlei). In systems that have retained tenuous linkages with the sea (e.g., Verlorenvlei, Wilderness lakes), elements of the marine fish assemblage have persisted, especially the presence of facultative catadromous species. Freshwater fish diversity in coastal lakes and lagoons is a function of historical and present biogeography and salinity. From a freshwater biogeography perspective, the inflowing rivers of the four temperate systems reviewed here contain three or fewer native freshwater fishes, while the subtropical lakes that are fed by river systems contain up to 40 freshwater fish species. Thus, the significantly higher fish species diversity in subtropical versus temperate coastal lakes and lagoons comes as no surprise. Fish species diversity has been increased further in some systems (e.g., Groenvlei) by alien fish introductions. However, the impacts of fish introductions and translocations have not been studied in the coastal lakes and lagoons of South Africa. In these closed systems, it is probable that predation impacts on small estuarine fishes are significant. The recent alien fish introductions is an example of the growing threats to these systems during the Anthropocene, a period when human activities have had significant negative impacts and show potential to match the changes recorded during the entire Holocene.     

Biogeographical determinants for total and endemic species richness in a continental archipelago

We examined the relationship between plant species richness and biogeographical variables (island area, island maximum elevation, distance from nearest inhabited island, distance from nearest mainland) using a data set comprising 201 islands of the Aegean archipelago. We found that endemic species richness was strongly correlated to total species richness. Single-island endemic species richness was most strongly correlated to island maximum elevation, and then to island area, with an apparent small island effect for islands smaller than 47 km². Total species richness was most strongly correlated to island area (with no apparent small island effect), and less strongly correlated to island maximum elevation. Distance from the mainland or other inhabited islands displayed limited predictive value in our data set. The slope of the relationship between species richness and geographical factors (island area, elevation, distance from island/mainland) was steeper for endemic species richness than for total richness. Finally, the different scales of endemicity (single-island endemics, island group endemics and Aegean regional endemics) displayed similar qualitative trends and only differed quantitatively. Thus, we conclude that different biogeographical factors act as drivers for total species richness than for endemic species richness.     

Patterns of endemism in the limestone flora of South African lowland fynbos

Taxonomie and biological aspects of endemism and Red Data Book status were studied amongst the limestone endemics of the lowland fynbos in the Cape Floristic Region, South Africa. Of the 110 limestone endemics, 1.8% are widely distributed in the Cape Floristic Region and 56.4% are regional endemics. Relative to flora of non-limestone lowland fynbos (n=538 species), the families which were overrepresented in terms of limestone endemics included the Ericaceae, Fabaceae, Polygalaceae, Rutaceae and Sterculiaceae. The Restionaceae was the only underrepresented family. The local limestone endemics were not significantly different from regional endemics in terms of their biological attributes. An analysis of the frequency of the biological traits associated with the limestone-endemic flora established a biological profile for a limestone endemic: a dwarf-to-low shrub with soil-stored seeds which are ant or wind dispersed. In terms of the species richness of limestone endemics, the De Hoop Nature Reserve was the hotspot within the region. Relative to the total species richness, the Hagelkraal and Stilbaai areas contained higher-than-predicted numbers of rare species. These areas require urgent attention if the unique floral diversity associated with limestone substrata within the Bredasdorp-Riversdale centre of endemism is to be conserved.     

Global diversity of fish (Pisces) in freshwater

The precise number of extant fish species remains to be determined. About 28,900 species were listed in FishBase in 2005, but some experts feel that the final total may be considerably higher. Freshwater fishes comprise until now almost 13,000 species (and 2,513 genera) (including only freshwater and strictly peripheral species), or about 15,000 if all species occurring from fresh to brackishwaters are included. Noteworthy is the fact that the estimated 13,000 strictly freshwater fish species live in lakes and rivers that cover only 1% of the earth’s surface, while the remaining 16,000 species live in salt water covering a full 70%. While freshwater species belong to some 170 families (or 207 if peripheral species are also considered), the bulk of species occur in a relatively few groups: the Characiformes, Cypriniformes, Siluriformes, and Gymnotiformes, the Perciformes (noteably the family Cichlidae), and the Cyprinodontiformes. Biogeographically the distribution of strictly freshwater species and genera are, respectively 4,035 species (705 genera) in the Neotropical region, 2,938 (390 genera) in the Afrotropical, 2,345 (440 genera) in the Oriental, 1,844 (380 genera) in the Palaearctic, 1,411 (298 genera) in the Nearctic, and 261 (94 genera) in the Australian. For each continent, the main characteristics of the ichthyofauna are briefly outlined. At this continental scale, ichthyologists have also attempted to identify ichthyological ‘‘provinces’’ that are regions with a distinctive evolutionary history and hence more or less characteristic biota at the species level. Ichthyoregions are currently identified in each continent, except for Asia. An exceptionally high faunal diversity occurs in ancient lakes, where one of the most noteworthy features is the existence of radiations of species that apparently result from intra-lacustrine speciation. Numerous fish-species flocks have been identified in various ancient lakes that are exceptional natural sites for the study of speciation. The major threats to fish biodiversity are intense and have been relatively well documented: overexploitation, flow modification, destruction of habitats, invasion by exotic species, pollution including the worldwide phenomena of eutrophication and sedimentation, all of which are interacting. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users. Guest editors: E. V. Balian, C. Lévêque, H. Segers & K. Martens Freshwater Animal Diversity Assessment     

Identifying priority sites for the conservation of freshwater fish biodiversity in a Mediterranean basin with a high degree of threatened endemics

The Guadiana River basin’s freshwater fish species richness, endemicity and threatened status (92% of native species are threatened) highlight the need for a large-scale study to identify priority areas for their conservation. One of the most common problems in conservation planning is the assessment of a site’s relative value for the conservation of regional biodiversity. Here we used a two-tiered approach, which integrates an assessment of biodiversity loss and the evaluation of conservation value through site-specific measures. These measures based on the reference condition approach introduce the ability to make objective comparisons throughout the Guadiana River basin, thus avoiding a priori target areas. We identified a set of biodiversity priority areas of special conservation significance—which contain rare taxa as well as intact fish communities—because of their outstanding contribution to the basin’s biodiversity. The inclusion of complete sub-basins in these priority areas might guarantee an optimal solution in terms of spatial aggregation and connectivity. However, the high spatial fragmentation to which the Guadiana River basin is submitted due to river regulation highlights the necessity of a systematic approach to evaluate the capability of the identified priority areas to maintain the Guadiana’s freshwater fish biodiversity. Handling editor: R. H. Norris     

Environmental mediation of intraguild predation between the freshwater invader Gammarus pulex and the native G. duebeni celticus

Invasive species and environmental change often occur simultaneously across a habitat and therefore our understanding of their relative roles in the decline of native species is often poor. Here, the environmental mediation of a critical interspecific interaction, intraguild predation (IGP), was examined between invasive (Gammarus pulex) and native (G. d. celticus) freshwater amphipods. In the laboratory, IGP asymmetries (males preying on congeneric females) were examined in river water sourced from zones where: (1) the invader has completely displaced the native; (2) the two species currently co-exist, and (3) the native currently persists uninvaded. The invader was always a more effective IG predator, but this asymmetry was significantly weaker moving from ‘invader-only water’ through ‘co-existence water’ to ‘native-only water’. The constituent of the water that drives this mediation of IGP was not identified. However, balancing the rigour of laboratory experiments with field derived ‘environment’ has advanced understanding of known patterns in a native species decline, and its co-existence and persistence in the face of an invader.