PC12细胞在缺氧条件下的自噬现象

目的：考察PC12细胞内自噬发生与缺氧时间的关系,探讨自噬对缺氧细胞的影响作用。方法：以PC12细胞为模型,将对数生长期的细胞加入96孔培养板,37℃、5% CO₂培养24 h后,放入0.5% O₂、94.5% N₂和5% CO₂的培养箱缺氧1 h、3 h、6 h、9h、12 h、24 h、36 h和48 h,用MTT法检测细胞存活率,透射电镜观察细胞内自噬体,Westen blot法检测自噬相关蛋白（LC3B、Atg5和Beclin1）的表达,用试剂盒检测细胞内乳酸脱氢酶（LDH）活性、活性氧自由基（ROS）和线粒体膜电位（MNP）水平,探究缺氧不同时间自噬对PC12细胞的作用。结果：在缺氧3~12 h,PC12细胞自噬明显增加,自噬相关蛋白（LC3B、Atg5和Beclin1）表达增加,尤其是缺氧9 h,PC12细胞存活明显增加,表明短时间缺氧自噬对细胞起保护作用,而随着缺氧时间的延长细胞存活明显降低,自噬相关蛋白表达水平减少,细胞LHD和ROS水平明显增加。MMP水平显著下降,细胞凋亡明显增加。结论：在缺氧早期自噬对PC12细胞起保护作用,但缺氧时间较长,超过了细胞自身调节能力导致细胞死亡。     

Trx通过Sirt3-P53通路促进自噬并改善高糖诱发的CMECs损伤

目的:明确硫氧还蛋白(Thioredoxin,Trx)通过自噬调节对大鼠心脏微血管内皮细胞损伤的保护作用及相关机制。方法:分离成年大鼠心脏微血管内皮细胞并分为:(1)正常对照组;(2)高糖组;(3)高糖+Trx组;(4)高糖+Trx+Ad-sh Sirt3组;(5)高糖+Trx+Ad-sh P53组;(6)高糖+DMSO空载组。通过In Vitro Vascular Permeability Assay Kit检测单层心脏微血管内皮细胞通透性,TUNEL染色检测细胞凋亡,Western blot法检测Sirt3、P53、Atg5、LC3BI/II等相关自噬相关信号通路关键蛋白的表达水平。结果:与正常对照组相比,高糖引起单层心脏微血管内皮细胞通透功能损伤,增加细胞凋亡,抑制自噬,且Sirt3、Atg5、LC3BI/II表达下降而P53表达上升;给予Trx可以上调Sirt3、Atg5、LC3BI/II蛋白表达水平,抑制P53表达,并显著减轻上述高糖引起的细胞损伤;但是,分别干扰Sirt3和P53表达后,Trx的作用明显减弱。结论:Trx通过Sirt3-P53信号通路促进心脏微血管内皮细胞自噬,降低细胞凋亡,改善高糖诱发的大鼠心脏微血管内皮细胞损伤。     

昆虫细胞自噬的生物学意义和自噬体膜的来源

细胞自噬(autophagy)是生物体广泛存在的细胞内自主降解过程。该过程通过自我吞噬细胞质成分和细胞器形成具有双层膜结构的自噬体, 与溶酶体融合实现细胞内物质的循环利用。细胞自噬在饥饿、 缺氧、 内质网胁迫、 病原入侵、 蛋白聚集等不良环境条件下实现自我挽救, 而细胞自噬的大量发生也是程序性细胞死亡(PCD)的启动和执行者之一。目前人们对自噬体分子组装和自噬发生的分子通路已有较深入的了解, 但仍然在很多重要问题上难以达成共识。本文结合我们的研究进展, 对昆虫细胞自噬的生物学意义和自噬体膜的来源问题进行综述和探讨。昆虫在营养相对匮乏的情况下发生低水平自噬(常态自噬), 用于维持细胞内的新陈代谢和继续生存的需要。昆虫在摄食阶段受到过度饥饿的刺激, 在变态发育时期受到蜕皮激素(20E)的诱导, 幼虫组织细胞发生高水平自噬和凋亡(apoptosis), 细胞表现为不可逆死亡, 过度饥饿导致幼虫发育迟缓或者死亡, 而20E导致幼虫蜕皮和幼虫组织退化或消亡。不同于酵母和高等动物细胞中的深入研究, 病原入侵是否和如何诱导昆虫细胞发生自噬, 目前尚缺乏足够的文献依据, 值得深入探讨。几乎所有的细胞器(内质网、 高尔基体、 线粒体)膜都可能是自噬体膜的来源, 这一问题在昆虫中也有待进一步诠释。     

肺上皮细胞自噬体在结核分枝杆菌感染中保护作用的分子机制

目的:构建Atg5-真核表达载体并瞬时转染肺上皮细胞细胞株,探讨自噬在结核分枝杆菌感染上皮细胞中保护作用的分子机制。方法:设计针对Atg5的RNAi序列,化学合成后经过变性,退火连接到pSilencerTM3.1-H1hygro真核表达载体,经测序验证其正确性。脂质体法瞬时转染真核细胞A549,免疫印迹法检测瞬时转染的效果。用结核分枝杆菌分别感染正常和自噬表达低下的A549细胞,通过检测LDH来观察细胞的坏死情况。结果:成功的构建了pSilencerTM 3.1-H1 hygro真核表达载体并建瞬时转染了A549细胞株,成功抑制了细胞的自噬功能。Atg5-细胞对结核杆菌的抵抗能力下降。结论:在自噬表达低下的细胞中,细胞对结核分枝杆菌的抵抗能力有明显下降。在结核分枝杆菌感染上皮细胞的过程中,自噬是一种保护机制。     

肺上皮细胞自噬体在结核分枝杆菌感染中保护作用的分子机制

目的：构建Atg5．真核表达载体并瞬时转染肺上皮细胞细胞株,探讨自噬在结核分枝杆菌感染上皮细胞中保护作用的分子机制。方法：设计针对Atg5的RNAi序列,化学合成后经过变性,退火连接到pSilencerTM3．1-H1hygro真核表达载体,经测序验证其正确性。脂质体法瞬时转染真核细胞A549,免疫印迹法检测瞬时转染的效果。用结核分枝杆菌分别感染正常和自噬表达低下的A549细胞．通过检测LDH来观察细胞的坏死情况。结果：成功的构建了pSilencerTM3．1-H1hygro真核表达载体并建瞬时转染了A549细胞株,成功抑制了细胞的自噬功能。Atg5-细胞对结核杆菌的抵抗能力下降。结论：在自噬表达低下的细胞中,细胞对结核分枝杆菌的抵抗能力有明显下降。在结核分枝杆菌感染上皮细胞的过程中,自噬是一种保护机制。     

Atg11的功能研究进展

Atg11利用自身众多螺旋结构域作为支架蛋白,主要介导选择性自噬过程中自噬体的形成.选择性自噬可特异性清除损坏的生物大分子和细胞器,在真核生物的胞内物质周转及细胞器质量控制中起重要作用.本文首先介绍了Atg11的结构特点,其次重点介绍了Atg11在3种选择性自噬(细胞质到液泡靶向(Cvt)途径、过氧化物酶体自噬和线粒体自噬)中的作用,最后概括了Atg11的其他功能.本文系统总结了近几年关于Atg11的研究进展,以期为自噬体形成机制研究及Atg11在自噬体形成过程中的功能研究提供参考.     

MiRNA对自噬的调控及在癌症中的作用CSCD

自噬(autophagy)通过溶酶体途径降解并循环利用胞质组分,在维持细胞内平衡、细胞生长、器官形成等方面扮演着重要作用。自噬异常通常与人类疾病相关。mi RNA是调控基因表达的重要分子,影响着众多信号通路。mi RNA通过调节自噬相关信号通路,对肿瘤细胞的生长起着重要的调节作用。本文讨论一些对自噬有重要调控作用的mi RNA,并阐述了在癌症形成的过程中,mi RNA通过对自噬各环节的调控,对癌症的促进或抑制发挥的重要作用。     

牦牛Atg5基因克隆及其在输卵管、卵巢和子宫中的表达定位

自噬是一种保守的细胞内降解过程,在多种生物体内证实自噬有重要的生物学意义。但是自噬在牦牛这一高原特色物种体内的研究未见报道。因此为探索正常生理条件下自噬相关基因在牦牛生殖过程中的表达,本研究分别采集牦牛不同繁殖周期（卵泡期、黄体期及妊娠期）的主要生殖器官（输卵管、卵巢、子宫）,克隆牦牛自噬相关基因5（Autophagy related 5,Atg5）基因并进行生物信息学分析;利用qRT-PCR检测Atg5 基因在组织中的相对表达量;并采用蛋白质免疫印迹（Western-blot, WB）检测Atg5和Atg5-Atg12（Autophagy related 12,自噬相关基因12）复合体在不同组织中的表达水平;免疫组织化学方法分析Atg5在各生殖器官中的分布特征。结果显示,成功克隆牦牛Atg5基因在进化过程中高度保守,编码的蛋白质为可溶性的非跨膜蛋白;qRT-PCR和WB检测结果显示Atg5和Atg5-Atg12复合体在牦牛输卵管、卵巢和子宫中均有表达。其中卵泡期卵巢Atg5-Atg12表达显著高于黄体期和妊娠期,卵泡期Atg5的表达却显著低于黄体期和妊娠期;黄体期输卵管Atg5-Atg12表达量显著高于卵泡期和妊娠期,妊娠期输卵管中Atg5的表达量显著高于卵泡期和黄体期;卵泡期和妊娠期子宫中Atg5-Atg12的表达量显著高于黄体期,而黄体期子宫中的Atg5的表达量又显著高于妊娠期和卵泡期,在蛋白水平上Atg5和Atg5-Atg12的表达呈负相关。免疫组织化学结果显示Atg5在输卵管黏膜上皮,卵巢卵泡膜、颗粒层、生殖上皮、黄体细胞,子宫内膜和子宫腺体均有表达。研究结果表明自噬在牦牛体内与其他物种相似具有保守性,通过检测Atg5-Atg12复合体在牦牛生殖器官中的表达,推测自噬可能参与牦牛生殖生理过程的调控。该研究结果对自噬在其他大型哺乳动物以及高寒低氧环境中动物的研究具有借鉴意义,有助于自噬参与其他动物生殖生理作用机制的研究。       

不同形态的烟曲霉对巨噬细胞自噬水平的影响

目的探究烟曲霉静息孢子、膨胀孢子以及菌丝对巨噬细胞自噬水平的影响。方法培养烟曲霉并收获静息孢子,在沙保弱液体培养基中振荡不同时间获得膨胀孢子及菌丝。以3种形态的烟曲霉分组处理RAW264.7细胞,免疫印迹法检测LC3BⅡ蛋白的表达量,逆转录PCR检测自噬相关蛋白Atg5、Atg7、Atg12 mRNA的转录水平。观察不同形态的烟曲霉刺激GFP-LC3B-RAW264.7细胞后GFP-LC3B的表达与定位。结果膨胀的烟曲霉孢子及菌丝刺激巨噬细胞后LC3BⅡ表达水平升高;Atg5与Atg12 mRNA的转录均明显增高,Atg7转录水平无显著变化;膨胀孢子诱导LC3B呈斑点样聚集并与之共定位,烟曲霉菌丝刺激后自噬体增多。结论烟曲霉膨胀孢子与菌丝能显著提高巨噬细胞自噬水平,静息的分生孢子不能引起巨噬细胞自噬功能的应答。     

线粒体自噬

细胞自噬(autophagy)是细胞依赖溶酶体对蛋白和细胞器进行降解的一条重要途径.目前,将通过细胞自噬降解线粒体的途径称为线粒体自噬(mitophagy).最近几年的证据表明,线粒体自噬是一个特异性的选择过程,并受到各种因子的精密调节,是细胞清除体内损伤线粒体和维持自身稳态的一种重要调节机制.自噬相关分子,如“核心”Atg 复合物,酵母线粒体外膜分子Atg32、Atg33、Uth1和Aup1,哺乳细胞线粒体外膜蛋白PINK1、NIX和胞质的Parkin等,在线粒体自噬中起关键的作用. 线粒体自噬异常与神经退行性疾病如帕金森氏病（Parkinson’s disease,PD）的发生密切相关. 本文就线粒体自噬的研究进展做简要的介绍.     

Dual roles of Atg8-PE deconjugation by Atg4 in autophagy

Modification of target molecules by ubiquitin or ubiquitin-like (Ubl) proteins is generally reversible. Little is known, however, about the physiological function of the reverse reaction, deconjugation. Atg8 is a unique Ubl protein whose conjugation target is the lipid phosphatidylethanolamine (PE). Atg8 functions in the formation of double-membrane autophagosomes, a central step in the well-conserved intracellular degradation pathway of macroautophagy (hereafter autophagy). Here we show that the deconjugation of Atg8-PE by the cysteine protease Atg4 plays dual roles in the formation of autophagosomes. During the early stage of autophagosome formation, deconjugation releases Atg8 from non-autophagosomal membranes to maintain a proper supply of Atg8. At a later stage, the release of Atg8 from intermediate autophagosomal membranes facilitates the maturation of these structures into fusion-capable autophagosomes. These results provide new insights into the functions of Atg8-PE and its deconjugation.     

Atg4 recycles inappropriately lipidated Atg8 to promote autophagosome biogenesis

Atg8 is a ubiquitin-like protein required for autophagy in the budding yeast Saccharomyces cerevisiae. A ubiquitin-like system mediates the conjugation of the C terminus of Atg8 to the lipid phosphatidylethanolamine (PE), and this conjugate (Atg8-PE) plays a crucial role in autophagosome formation at the phagophore assembly site/pre-autophagosomal structure (PAS). The cysteine protease Atg4 processes the C terminus of newly synthesized Atg8 and also delipidates Atg8 to release the protein from membranes. While the former is a prerequisite for lipidation of Atg8, the significance of the latter in autophagy has remained unclear. Here, we show that autophagosome formation is significantly retarded in cells deficient for Atg4-mediated delipidation of Atg8. We find that Atg8-PE accumulates on various organelle membranes including the vacuole, the endosome and the ER in these cells, which depletes unlipidated Atg8 and thereby attenuates its localization to the PAS. Our results suggest that the Atg8-PE that accumulates on organelle membranes is erroneously produced by lipidation system components independently of the normal autophagic process. It is also suggested that delipidation of Atg8 by Atg4 on different organelle membranes promotes autophagosome formation. Considered together with other results, we propose that Atg4 acts to compensate for the intrinsic defect in the lipidation system; it recycles Atg8-PE generated on inappropriate membranes to maintain a reservoir of unlipidated Atg8 that is required for autophagosome formation at the PAS.     

Visualization of Atg3 during Autophagosome Formation in Saccharomyces cerevisiae

Macroautophagy (autophagy) is a highly conserved cellular recycling process involved in degradation of eukaryotic cellular components. During autophagy, macromolecules and organelles are sequestered into the double-membrane autophagosome and degraded in the vacuole/lysosome. Autophagy-related 8 (Atg8), a core Atg protein essential for autophagosome formation, is a marker of several autophagic structures: the pre-autophagosomal structure (PAS), isolation membrane (IM), and autophagosome. Atg8 is conjugated to phosphatidylethanolamine (PE) through a ubiquitin-like conjugation system to yield Atg8-PE; this reaction is called Atg8 lipidation. Although the mechanisms of Atg8 lipidation have been well studied in vitro, the cellular locale of Atg8 lipidation remains enigmatic. Atg3 is an E2-like enzyme that catalyzes the conjugation reaction between Atg8 and PE. Therefore, we hypothesized that the localization of Atg3 would provide insights about the site of the lipidation reaction. To explore this idea, we constructed functional GFP-tagged Atg3 (Atg3-GFP) by inserting the GFP portion immediately after the handle region of Atg3. During autophagy, Atg3-GFP transiently formed a single dot per cell on the vacuolar membrane. This Atg3-GFP dot colocalized with 2× mCherry-tagged Atg8, demonstrating that Atg3 is localized to autophagic structures. Furthermore, we found that Atg3-GFP is localized to the IM by fine-localization analysis. The localization of Atg3 suggests that Atg3 plays an important role in autophagosome formation at the IM.     

Structure-function relationship of Atg12, a ubiquitin-like modifier essential for autophagy

Atg12, a post-translational modifier, is activated and conjugated to Atg5 by a ubiquitin-like conjugation system, though it has no obvious sequence homology to ubiquitin. The Atg12-Atg5 conjugate is essential for autophagy, an intracellular bulk degradation process. Here, we show that the carboxyl-terminal region of Atg12 that is predicted to fold into a ubiquitin-like structure is necessary and sufficient for both conjugation and autophagy, which indicates that the domain essential for autophagy resides in the ubiquitin-fold region. We further show that two hydrophobic residues within the ubiquitin-fold region are important for autophagy: mutation at Y149 affects conjugate formation catalyzed by Atg10, an E2-like enzyme, while mutation at F154 has no effect on Atg12-Atg5 conjugate formation but its hydrophobic nature is essential for autophagy. In response to the F154 mutation, Atg8-PE conjugation, the other ubiquitin-like conjugation in autophagy, is severely reduced and autophagosome formation fails. Gel filtration analysis suggests that F154 plays a critical role in the assembly of a functional Atg12-Atg5.Atg16 complex that is requisite for autophagosome formation.     

梨小食心虫幼虫中肠中高表达消化酶和解毒酶基因的筛选

【目的】挖掘梨小食心虫Grapholita molesta幼虫中肠中高表达消化酶和解毒酶基因,为今后研究以肠道为靶标的新型农药和转基因作物提供理论依据。【方法】基于梨小食心虫4龄幼虫中肠转录组高通量测序数据的FPKM值,筛选高表达基因,进行GO功能注释和KEGG通路富集分析,并使用BLAST软件进行比对筛选高表达的消化酶和解毒酶基因,利用MEGA对这些高表达的消化酶和解毒酶及其他鳞翅目昆虫的同源蛋白进行系统发育分析。利用qRT-PCR技术对梨小食心虫幼虫不同龄期中肠中的高表达代表性消化酶和解毒酶基因表达量进行定量分析和验证。【结果】在GO数据库中注释了103 677个在梨小食心虫4龄幼虫中肠中高表达基因,包括细胞组分、分子功能和生物学进程三大类功能共41个分支。KEGG通路分析表明,10 846个高表达基因参与了5类生化代谢通路。筛选到具有完整开放阅读框的消化酶基因17个［5个胰蛋白酶(trypsin, TRY)基因、3个氨肽酶(aminopeptidase, APN)基因和9个羧肽酶(carboxypeptidase, CP)基因］和解毒酶基因32个［11个谷胱甘肽S-转移酶(glutathione S-transferase, GST)基因、13个细胞色素P450(cytochrome P450, CYP450)基因和8个羧酸脂酶(carboxylesterase, CarE)基因］。系统发育分析结果表明,梨小食心虫的消化酶同源聚类分支较为分散,GSTs和CYP450s分支聚类较为集中,但都至少与1个鳞翅目昆虫同源蛋白聚在一支。qRT-PCR验证结果表明,消化酶和解毒酶基因在不同龄期梨小食心虫幼虫中肠中的表达量差异显著,表达量均在4龄幼虫期最高。【结论】本研究成功筛选和验证部分梨小食心虫幼虫中肠中高表达的消化酶和解毒酶基因,明确其与鳞翅目其他昆虫同源蛋白的进化关系。研究结果为鳞翅目其他近缘昆虫的转录组分析和以肠道为靶标的害虫防治提供了参考。     

Structure-Function Relationship of Atg12, a Ubiquitin-Like Modifier Essential for Autophagy

Atg12, a post-translational modifier, is activated and conjugated to Atg5 by a ubiquitin-like conjugation system, though it has no obvious sequence homology to ubiquitin. The Atg12-Atg5 conjugate is essential for autophagy, an intracellular bulk degradation process. Here, we show that the carboxyl-terminal region of Atg12 that is predicted to fold into a ubiquitin-like structure is necessary and sufficient for both conjugation and autophagy, which indicates that the domain essential for autophagy resides in the ubiquitin-fold region. We further show that two hydrophobic residues within the ubiquitin-fold region are important for autophagy: mutation at Y149 affects conjugate formation catalyzed by Atg10, an E2-like enzyme, while mutation at F154 has no effect on Atg12-Atg5 conjugate formation but its hydrophobic nature is essential for autophagy. In response to the F154 mutation, Atg8-PE conjugation, the other ubiquitin-like conjugation in autophagy, is severely reduced and autophagosome formation fails. Gel filtration analysis suggests that F154 plays a critical role in the assembly of a functional Atg12-Atg5?Atg16 complex that is requisite for autophagosome formation.     

The coiled-coil domain protein EPG-8 plays an essential role in the autophagy pathway in C. elegans

Macroautophagy (hereafter referred to as autophagy) involves the formation of a closed, double membrane structure, called the autophagosome. Most of the Atg proteins that are essential for autophagosome formation are evolutionarily conserved between yeast and higher eukaryotes. The functions of some Atg proteins, however, are mediated by highly divergent proteins in mammalian cells. In this study, we identified a novel coiled-coil domain protein, EPG-8, that plays an essential role in the autophagy pathway in C. elegans. Mutations in epg-8 cause defects in degradation of various autophagy substrates and also compromise survival of animals under nutrient-depletion conditions. In epg-8 mutants, lipidated LGG-1 (the C. elegans Atg8 homolog) accumulates but does not form distinct punctate structures. EPG-8 directly interacts with the C. elegans Beclin 1 homolog, BEC-1. Our study demonstrates that epg-8 may function as a highly divergent homolog of the yeast autophagy gene Atg14.     

Baculovirus infection triggers a shift from amino acid starvation-induced autophagy to apoptosis

Autophagy plays a central role in regulating important cellular functions such as cell survival during starvation and control of infectious pathogens. On the other hand, many pathogens have evolved mechanisms of inhibition of autophagy such as blockage of the formation of autophagosomes or the fusion of autophagosomes with lysosomes. Baculoviruses are important insect pathogens for pest control, and autophagy activity increases significantly during insect metamorphosis. However, it is not clear whether baculovirus infection has effects on the increased autophagy. In the present study, we investigated the effects of the Autographa californica nucleopolyhedrovirus (AcMNPV) infection on autophagy in SL-HP cell line from Spodoptera litura induced under amino acid deprivation. The results revealed that AcMNPV infection did not inhibit autophagy but triggered apoptosis under starvation pressure. In the early stage of infection under starvation, mitochondrial dysfunction was detected, suggesting the organelles might be involved in cell apoptosis. The semi-quantitative PCR assay revealed that the expression of both p35 and ie-1 genes of AcMNPV had no significant difference between the starved and unstarved SL-HP cells. The western blot analysis showed that no cleavage of endogenous Atg6 occurred during the process of apoptosis in SL-HP cells. These data demonstrated that some permissive insect cells may defend baculovirus infection via apoptosis under starvation and apoptosis is independent of the cleavage of Atg6 in SL-HP cells.     

Functional identification of Bombyx mori Atg13 in autophagy

The autophagy process involves a series of autophagy-related (Atg) proteins, which are conserved in eukaryotes. ULK1/Atg1-ATG13/Atg13 is the core protein complex for autophagy initiation in response to nutrient and hormone signaling. However, how Atg13 is regulated to participate in autophagy is unclear in insects. Here in Bombyx mori, the variation of BmAtg13 was correlated with autophagy induced by steroid hormone 20-hydroxyecdysone (20E) or starvation. Developmental profiles from feeding to prepupal stage revealed that there were two bands of BmAtg13 protein detected by western blot analysis, therein the upper band was intensively decreased, while the lower band was significantly increased which was in accordance with its mRNA variation; and immunofluorescent staining indicated that BmAtg13 was nucleocytoplasmic translocated during larval-pupal metamorphosis when autophagy was dramatically induced. BmAtg13 knockdown and overexpression both inhibits autophagy. Besides, 20E treatment-induced BmAtg13 gene expression, while blocking 20E signaling transduction by knockdown of BmUsp reduced both gene expression and protein level of BmAtg13. These results reveal that BmAtg13 is required for 20E- and starvation-induced autophagy in B. mori, which provides the foundation for further related studies.