芯片杂交中荧光标记样品定量与非定量的比较研究

比较在芯片杂交中,荧光标记样品定量与非定量对杂交结果的影响。其方法是,提取经As2O3作用K562细胞前后的总RNA,逆转录成cDNA第一链,并分别用Cy3／Cy5标记。标记后的样品再次定量或不定量,但均取相同体积上样与K562芯片杂交,用扫描仪扫描并分析。其结果,标记后样品定量与不定量杂交的结果都与理论推测一致,但以样品定量进行杂交的效果更好,标记样品杂交前再次定量的,分析发现2个基因表达下调;杂交前不定量仅取相同体积进行杂交的,发现6个基因片段表达下调,其中只有2个基因与细胞凋亡通路密切相关。认为在芯片的杂交检测中,对荧光标记样品杂交前再次定量可大大提高杂交结果的可靠性。     

鼻咽癌上皮细胞株HNE1差异表达基因的分离与鉴定

为了分离鼻咽癌差异表达基因 ,应用抑制性扣除杂交技术 ,在正向抑制性扣除杂交中 ,以鼻咽癌上皮细胞株HNE1cDNA作为检测子 ,以人胚鼻咽上皮细胞cDNA作为驱赶子 ;在反向抑制性扣除杂交中 ,以人胚鼻咽上皮细胞cDNA作为检测子 ,以鼻咽癌上皮细胞株HNE1cDNA作为驱赶子 ,分别通过抑制性扣除杂交 ,构建了鼻咽癌上皮细胞株HNE1表达下调和表达上调的两个扣除cDNA文库 .从鼻咽癌相关的扣除cDNA文库中随机挑取 1 2 0 0个克隆 ,采用菌落PCR扩增其插入cDNA片段 ,自动点膜制备成cDNA微阵列膜 ,分别用鼻咽癌上皮细胞株HNE1、人胚鼻咽上皮mRNA经逆转录标记cDNA探针 ,分别与cDNA微阵列膜杂交 ,通过杂交信号的自动扫描分析 ,对杂交信号存在 5倍差异的克隆进行测序 ,获得了 1 0个鼻咽癌差异表达基因的cDNA片段 ,其中 3个为新基因序列 ,其GenBank登录号为 :AF5 1 0 1 88、AF5 1 0 1 89和AF5 1 0 1 90 ,7个代表已知基因序列 .采用RT PCR证实S1 0 0A8,CK1 9和RBP1基因在人胚鼻咽上皮中高表达而在鼻咽癌细胞株HNE1中低表达 .这些结果显示上述基因可能是鼻咽癌发生的重要因素     

基因表达谱芯片杂交影响因素的初步研究

通过对K562细胞基因表达谱芯片杂交影响因素的研究表明,用限制性显示技术制备的cDNA探针长度较均一,适合基因芯片杂交;在42℃条件下含甲酰胺的杂交液中杂交16．20h,可保证样品的有效杂交。并表现出很好的杂交特异性;用RD-PCR或线性PCR对少量样品进行扩增,并用荧光(Cy3或Cy5)标记的通用引物对样品进行标记,可提高芯片检测的灵敏度;一次杂交反应总RNA的用量仅需0．5～10μg,在每cm^2约含1000～1500个点的阵列中杂交时,标记样品用量1～2μg为宜;用PCR产物纯化柱对荧光标记产物进行纯化,可大大减小背景荧光,提高信噪比;同一批芯片经同一样品杂交结果的重复性很好,相关系数高达97．8％     

cDNA微阵列技术研究干旱胁迫下星星草基因的表达

运用cDNA微阵列技术研究干旱胁迫下星星草基因的表达。制备了载有660条星星草单一基因的cDNA微阵列。分别对干旱胁迫和对照星星草的mRNA进行荧光标记,并与载有星星草基因的cDNA微阵列进行杂交,通过芯片的杂交信号强度分析,共获得22个下调表达和17个上调表达的基因。BLASTX分析表明这些基因按功能可以分为脱水保护、信号转导与调控、活性氧清除、代谢、核糖体蛋白等几大类。发现了一些与干旱胁迫相关的功能未知基因和新基因。     

Bax基因诱导鼻咽癌细胞中相关基因的mRNA差异显示分析

目的：应用差异显示技术,筛选鼻咽癌相关基因的异常表达。方法：选用连接有bax基因的真核表达质粒pSFFV-bax-neo, 采用脂质体转染法, 将其转染到CNE2细胞中, 以转染有空载的pSFFV-neo 质粒的CNE2细胞为对照, 采用Trizol试剂快速抽取法, 提取mRNA经逆转录成cDNA,用锚式引物和随机引物进行PCR扩增, 加入同位素, 用6%的测序变性聚丙烯酰胺凝胶上电泳PCR产物进行分离。切下聚丙烯酰胺凝胶上明显的6条差异带, 回收差异cDNA, 进行第二次PCR扩增, 经低溶点琼脂凝胶回收, 获取大量PCR扩增的差异cDNA片段,同位素标记作为探针, 抽取RNA, 进行点样, 杂交, 洗膜放射自显影等步骤, 进行细胞RNA的Northern印迹斑点杂交。结果：表明4条cDNA片段均为CNE2细胞表达片段。结论：发现bax可诱导CNE2细胞中有某些相关基因表达,并抑制了CNE2细胞某些相关基因表达。     

用抑制差减杂交法分离和克隆梭梭幼苗受渗透胁迫诱导相关基因的cDNA片段

以Hoagland溶液培养的梭梭幼苗（H）为对照群体,甘露醇处理的梭梭幼苗（M）为目标群体,进行抑制差减杂交。用经过H cDNA差减的M cDNA构建了一个含有大约400个独立克隆的差减文库;采用差减前的H cDNA和M cDNA以及正向／反向差减杂交后的cDNA为模板标记探针,对随机挑取的100个重组质粒进行差示筛选,获得了21个阳性侯克隆,从这些阳性候选克隆中随机挑取了8个进行Northern blot分析。证实其中3个候选克隆代表了在M中特异表达或表达增强的基因,序列分析和同源性比较表明它们与逆境胁迫有关;而另外5个候选克隆无Northern杂交信号,推测它们为低丰度转录本。     

PCR法制备地高辛标记探针改良PCR-Select Differential Screening试剂盒

目的:探讨采用地高辛(digoxin,DIG)标记探针替代PCR-Select differential screening试剂盒中同位素标记探针的方法.方法:抑制性消减杂交(suppression subtractive hybridization,SSH)所分离的差异表达序列转移至硝酸纤维素膜,以PCR法掺入DIG-11-dUTP制备探针,按DIG标记探针常规操作进行杂交显色,杂交阳性结果采用reverseNorthern blot再度杂交验证.结果:应用DIG标记探针改良PCR-Select Differential Screening试剂盒所得到的阳性结果经reverse Northern blot验证符合率达到90%.结论:DIG标记探针改良PCR-Select differential screening试剂盒在避免了放射污染同时具备很高的特异性,完全可以替代同位素标记探针.     

用少量样本进行抑制性消减杂交

利用根据cap-finder方法建立的全长cDNA合成技术,扩增获得了恒河猴着床点子宫内膜组织表达mRNA的双链cDNA,通过抑制性消减杂交,成功地构建了恒河猴着床点消减文库.随机挑选文库中的阳性克隆,经点杂交证明27％为着床点差异表达的克隆.由此表明抑制性消减杂交结合cap-finder扩增全长cDNA的方法,可以有效地从少量而珍贵的样本中获得高质量的消减文库.     

用抑制差减杂交法分离和克隆梭梭幼苗受渗透胁迫诱导相关基因的cDNA片段

以Hoagland溶液培养的梭梭幼苗(H)为对照群体,甘露醇处理的梭梭幼苗(M)为目标群体,进行抑制差减杂交.用经过H cDNA差减的M cDNA构建了一个含有大约400个独立克隆的差减文库;采用差减前的H cDNA和M cDNA以及正向/反向差减杂交后的cDNA为模板标记探针,对随机挑取的100个重组质粒进行差示筛选,获得了21个阳性候选克隆.从这些阳性候选克隆中随机挑取了8个进行Northern blot分析,证实其中3个候选克隆代表了在M中特异表达或表达增强的基因,序列分析和同源性比较表明它们与逆境胁迫有关;而另外5个候选克隆无Northem杂交信号,推测它们为低丰度转录本.     

Evidence that the C-terminus of OprM is involved in the assembly of the VceAB-OprM efflux pump

Although the architecture of tripartite multiple drug resistance (MDR) efflux pumps of Gram-negative bacteria has been well characterized, the means by which the components recognize each other and assemble into a functional pump remains obscure. In this study we present evidence that the C-terminal domain of the Pseudomonas aeruginosa OprM and the α-helical hairpin domain of Vibrio cholerae VceA play an important role in the recognition/specificity/recruitment step in the assembly of a functional, VceAB-OprM chimeric efflux pump. To our knowledge, this is the first evidence directly linking the C-terminal domain of an outer membrane efflux protein to its recruitment during the assembly of a tripartite efflux pump.     

心脑血管疾病大额住院消费统计分析

通过对医院2004-2006年心脑血管疾病大额住院消费(消费大于50000元,以下简称大额消费)病例发病率高的前五种疾病的构成情况、药费、材料费消耗情况进行分析,认为加强大额病例中发病率高的病种的重点管理,是降低医疗费用的有效途径。建议制定常见病大额病种预定额付费方案和审查报销制度;采用适宜技术;控制药费,防止过度医疗,有效地遏制医疗费用的过快增长。     

Studies on the energy coupling sites of photophosphorylation IV. The relation of proton fluxes to the electron transport and ATP formation associated with Photosystem II

1. By using dibromothymoquinone as the electron acceptor, it is possible to isolate functionally that segment of the chloroplast electron transport chain which includes only Photosystem II and only one of the two energy conservation sites coupled to the complete chain (Coupling Site II, observed P/e₂ = 0.3–0.4). A light-dependent, reversible proton translocation reaction is associated with the electron transport pathway: H₂O → Photosystem II → dibromothymoquinone. We have studied the characteristics of this proton uptake reaction and its relationship to the electron transport and ATP formation associated with Coupling Site II.

2. The initial phase of H⁺ uptake, analyzed by a flash-yield technique, exhibits linear kinetics (0–3 s) with no sign of transient phenomena such as the very rapid initial uptake (“pH gush”) encountered in the overall Hill reaction with methylviologen. Thus the initial rate of H⁺ uptake obtained by the flash-yield method is in good agreement with the initial rate estimated from a pH change tracing obtained under continuous illumination.

3. Dibromothymoquinone reduction, observed as O₂ evolution by a similar flash-yield technique, is also linear for at least the first 5 s, the rate of O₂ evolution agreeing well with the steady-state rate observed under continuous illumination.

4. Such measurements of the initial rates of O₂ evolution and H⁺ uptake yield an H⁺/e⁻ ratio close to 0.5 for the Photosystem II partial reaction regardless of pH from 6 to 8. (Parallel experiments for the methylviologen Hill reaction yield an H⁺/e⁻ ratio of 1.7 at pH 7.6.)

5. When dibromothymoquinone is being reduced, concurrent phosphorylation (or arsenylation) markedly lowers the extent of H⁺ uptake (by 40–60%). These data, unlike earlier data obtained using the overall Hill reaction, lend themselves to an unequivocal interpretation since phosphorylation does not alter the rate of electron transport in the Photosystem II partial reaction. ADP, P_i and hexokinase, when added individually, have no effect on proton uptake in this system.

6. The involvement of a proton uptake reaction with an H⁺/e⁻ ratio of 0.5 in the Photosystem II partial reaction H₂O → Photosystem II → dibromothymoquinone strongly suggests that at least 50% of the protons produced by the oxidation of water are released to the inside of the thylakoid, thereby leading to an internal acidification. It is pointed out that the observed efficiencies for ATP formation (P/e₂) and proton uptake (H⁺/e⁻) associated with Coupling Site II can be most easily explained by the chemiosmotic hypothesis of energy coupling.     

THE DEATH OF BIOETHICS (AS WE ONCE KNEW IT)

Fast forward 50 years into the future. A look back at what occurred in the field of bioethics since 2010 reveals that a conference in 2050 commemorated the death of bioethics. In a steady progression over the years, the field became increasingly fragmented and bureaucratized. Disagreement and dissension were rife, and this once flourishing, multidisciplinary field began to splinter in multiple ways. Prominent journals folded, one by one, and were replaced with specialized publications dealing with genethics, reproethics, nanoethics, and necroethics. Mainstream bioethics organizations also collapsed, giving way to new associations along disciplinary and sub‐disciplinary lines. Physicians established their own journals, and specialty groups broke away from more general associations of medical ethics. Lawyers also split into three separate factions, and philosophers rejected all but the most rigorous, analytic articles into their newly established journal. Matters finally came to a head with global warming, the world‐wide spread of malaria and dengue, and the cost of medical treatments out of reach for almost everyone. The result was the need to develop plans for strict rationing of medical care. At the same time, recognition emerged of the importance of the right to health and the need for global justice in health. By 2060, a spark of hope was ignited, opening the door to the resuscitation of bioethics and involvement of the global community.     

Strategy for Stabilizing Enzymes Part Two: Increasing Enzyme Stability by Selective Chemical Modification

The molecular mechanisms of change in the thermal stability of proteins modified with low molecular weight reagents are discussed. The choice of stabilization mechanisms to be used as a general strategy for increasing enzyme stability by chemical modification is addressed. Hydrophilization of nonpolar surface areas is the most simple and reliable approach to artificial stabilization of enzymes for use in applied biochemistry and biotechnology.     

Partial purification and properties of Galleria mellonella larvae proteolytic inhibitors acting on Metarhizium anisopliae toxic protease

Gel permeation, preparative isoelectric focusing, and affinity chromatography were used to purify three inhibitors of proteolytic activity from perchloric acid extracts of last instar Galleria mellonella larvae. Electrofocusing experiments revealed three isoinhibitors with different isoelectric points: inhibitor I-1 with p1 of pH 5.6, inhibitor I-2, pH 7.7, and inhibitor I-3 (of small inhibitory activity), pH 8.6. By affinity chromatography on trypsin-Sepharose 4B the I-1 was purified 9.7 ×, but 71.1% of inhibitory activity was lost. Molecular mass of the inhibitory complex was 12,600 Da. I-1 and I-2 are relatively stable to heat at several pHs with minor stability at pH 10. I-1 and I-2 inhibit serine proteases about 2.5 times as much as sulfhydryl proteases. In the same ratio protease P-1 and protease P-2 from Metarhizium anisopliae are inhibited.     

Survival and metabolism of the harpacticoid copepod Thompsonula hyaenae (Thompson) fed on different diatoms

Survival times and oxygen consumption rates have been determined for a benthic harpacticoid copepod, Thompsonula hyaenae (Thompson), when fed different algal diets. Nauplii and adults lived slightly longer on a diet of Navicula sp. than did those fed N. pelliculosa or a mixture of both naviculoid species. Mean numbers of harpacticoids hatched were significantly higher in cultures of N. pelliculosa. Metabolic rates of non-gravid females fed for one week on N. sp. were significantly lower than those fed N. pelliculosa or the mixture. There was no significant difference in oxygen uptake between animals fed N. pelliculosa and those fed the mixed culture. The smaller size and lower food energy content of N. pelliculosa are reflected in the higher respiratory rates of animals led this diatom species.Based on a thesis submitted in partial fulfillment of the M.S. degree in Marine Science at the University of South Carolina. Belle W. Baruch Institute for Marine Biology and Coastal Research Contribution No. 114. Research supported by the Oceanography Section, National Science Foundation, NSF Grant DES72-01573 A01.     

贵州疣螈繁殖生态的研究

贵州疣螈（Tylototritonkweichowensis）是一年繁殖一次的有尾两栖动物。繁殖期肥满度、肝脏系数、脂肪系数、性腺成熟系数、性腺体积均具一定的生物学意义。繁殖期一般为5月上旬至7月上旬,窝卵数平均121．5±7．81枚,孵化期21．6天,孵化率44．33％。每窝印数与雌体头体长成正相关。幼体不同日龄的形态特征变化明显。其全长的Logistic生长方程为：     

温度对棉蚜繁殖速度的影响

作者于1981—1983年在棉花苗龄一致、棉蚜试验基数一致、隔离天敌动物及有翅蚜条件下,利用4—7月份的棉田不同温、湿度条件,研究了棉田温度对棉蚜繁殖速度的影响。结果证明:棉田五日平均温度(以下简称温度)17.6—24.0℃,棉蚜繁殖速度最快,五日内繁殖21.9—46.0倍;温度低于和高于此范围,达12.7℃和25.0—31.2℃时,棉蚜繁殖速度减慢,同期分别繁殖4.2倍和6.3—19.2倍。同时证明:在伏期7月份当温度在上述适温范围内时,棉蚜繁殖速度快,而当温度高至26.7—30.9℃处于适温范围以外时,其繁殖速度同样减慢,同期繁殖4.5—19.2倍。由此说明,确利于棉蚜繁殖的适温范围大体为17—24℃;棉蚜繁殖在5月份苗期和7月份伏期的适温范围基本一致。