Benthic macrophyte metrics as bioindicators of water quality: towards overcoming typological boundaries and methodological tradition in Mediterranean and Black Seas

Benthic macrophyte communities of different substratum types (soft, hard) were studied in eleven differently impacted sites belonging in two different water typologies (transitional waters: Lesina Lagoon, Varna Lake; coastal waters: Varna Bay) and two ecoregions (Mediterranean Sea, Black Sea). Species lists were compiled for each study site, 20 taxa were found at Lesina and Varna Lake and Bay, and the abundance of each taxon was determined at each site. The relationship between nine metrics related to community structure [species richness, % of total coverage, dry biomass (g/m^?2), and cluster and multi-dimensional scaling plot of Bray–Curtis similarity] and function [Ecological Status Group I % coverage, ESG II % coverage, Ecological Evaluation Index (EEI-c) and Ecological Index (EI_EEI)] and key abiotic factors and an anthropogenic stress index (EnII) were studied. A strong relationship (Spearman rank correlation coefficient ρ ≤ ?0.89; R ² ≥ 0.89) between anthropogenic stress and functional indices, EEI-c and EI_EEI, was found. The structural index ‘species richness’ correlated negatively with EnII and positively with salinity, demonstrating a freshwater and confinement influence on species diversity. EEI-c and EI_EEI indices classified the studied sites and locations in different Ecological Status Classes in accordance with the anthropogenic stress gradient.     

The results of an assessment of the ecological state of zoobenthos communities according to the difference of evenness index (D E′ )

The difference of the evenness index (D _E′ ) is offered for an assessment of the ecological state of zoobenthos communities. The index is deduced on the basis of the Shannon indexes calculated according to abundance and biomass data and differentiates between these informational estimations (Shannon diversity) of evenness of species in any given community. Conclusions made by Pianka about the predomination of organisms with r and K life strategy in communities impacted and unimpacted by ecological stress, as well as the ABC-curves method suggested by Warwick, were used as the basis of the functioning mechanism for the suggested index. The examples of index applicability are demonstrated by an assessment of materials collected in freshwater, estuarine, and marine waterbodies during one-time surveys and long-term monitoring observations. The results are compared with zoobenthos assessments made on the basis of some other indexes. Conclusions concerning the efficiency of the D _E′ have been made and some of its advantages over other indexes are shown.     

Algal Exudates and Stream Organic Matter Influence the Structure and Function of Denitrifying Bacterial Communities

Within aquatic ecosystems, periphytic biofilms can be hot spots of denitrification, and previous work has suggested that algal taxa within periphyton can influence the species composition and activity of resident denitrifying bacteria. This study tested the hypothesis that algal species composition within biofilms influences the structure and function of associated denitrifying bacterial communities through the composition of organic exudates. A mixed population of bacteria was incubated with organic carbon isolated from one of seven algal species or from one of two streams that differed in anthropogenic inputs. Pyrolysis-gas chromatography-mass spectrometry (Py-GC/MS) revealed differences in the organic composition of algal exudates and stream waters, which, in turn, selected for distinct bacterial communities. Organic carbon source had a significant effect on potential denitrification rates (DNP) of the communities, with organics isolated from a stream with high anthropogenic inputs resulting in a bacterial community with the highest DNP. There was no correlation between DNP and numbers of denitrifiers (based on nirS copy numbers), but there was a strong relationship between the species composition of denitrifier communities (as indicated by tag pyrosequencing of nosZ genes) and DNP. Specifically, the relative abundance of Pseudomonas stutzeri-like nosZ sequences across treatments correlated significantly with DNP, and bacterial communities incubated with organic carbon from the stream with high anthropogenic inputs had the highest relative abundance of P. stutzeri-like nosZ sequences. These results demonstrate a significant relationship between bacterial community composition and function and provide evidence of the potential impacts of anthropogenic inputs on the structure and function of stream microbial communities.     

Long-term variation in trematode (Trematoda, Digenea) component communities associated with intertidal gastropods is linked to abundance of final hosts

Trematodes are abundant parasites essential for maintaining stability of marine intertidal ecosystems. Despite the great ecological significance of trematodes, long-term dynamics of their communities remains practically unstudied. This study, based on 12-year-long seasonal monitoring of infection of Littorina and Hydrobia snails with 16 trematode species in the White Sea, aimed to reveal factors determining long-term variation in infection of intertidal snails by trematode parthenitae and larvae. Using the state-of-the-art method of singular spectrum analysis, we revealed trends in this variation and assessed their significance. Interestingly, these trends were not associated with oceanic and climatic parameters but were mostly determined by changes in abundance of the trematode final hosts. Moreover, the prevalence trends turned out to be connected with both large-scale events and local factors at the scale of the intertidal site. The main factors determining the long-term dynamics of the trematode component communities in the study area were the decreasing abundance of birds due to growing anthropogenic disturbance and the increasing abundance of the three-spined stickleback. The analysis of long-term trends of trematode prevalence in intertidal snails may be a sensitive indicator of the abundance dynamics of final hosts in the coastal areas of temperate and northern seas.     

N90 index: A new approach to biodiversity based on similarity and sensitive to direct and indirect fishing impact

An important effort has been made to develop diversity indices suitable to monitor the loss of biodiversity due to anthropogenic impacts in an accurate and comprehensible way. Here, N₉₀, a diversity index based on the species’ contribution to the similarity between samples in a group, is presented. N₉₀ uses the results of the classic Similarity Percentage analysis and a jack-knife routine to calculate the average and a dispersion value of the number of species contributing up to the ninety percent of the similarity in a group of samples. N₉₀ is applied to two groups of samples subjected to contrasting levels of bottom trawl fishing pressure using time series of experimental bottom trawl surveys of the Balearic Islands. The results are compared to those obtained using more ‘traditional’ diversity indices such as species richness, Shannon–Wienner, Simpson, Pielou, and Margalef diversity indices. The N₉₀ diversity index displayed a clear response to fishing pressure with significantly lower values in impacted communities, while the ‘traditional’ diversity indices showed almost null sensitivity to fishing pressure. In addition, N₉₀ also detects indirect fishing impacts by fluctuating in response to environmental variation in impacted areas, making this index sensitive to the synergies between climate and fishing impact at community level. The application of the N₉₀ diversity index to the case study shows that it may be an alternative to ‘traditional’ diversity indices when trying to monitor fishing impacts and the effects of environmental changes. Its units, number of species, and the corresponding summary list of species facilitate the interpretability of the results, improving the communication to managers and stakeholders.     

Microbial Community Diversities and Taxa Abundances in Soils along a Seven-Year Gradient of Potato Monoculture Using High Throughput Pyrosequencing Approach

Background

Previous studies have focused on linking soil community structure, diversity, or specific taxa to disturbances. Relatively little attention has been directed to crop monoculture soils, particularly potato monoculture. Information about microbial community changes over time between monoculture and non-monoculture treatments is lacking. Furthermore, few studies have examined microbial communities in potato monoculture soils using a high throughput pyrosequencing approach.

Methodology/Principal Findings

Soils along a seven-year gradient of potato monoculture were collected and microbial communities were characterized using high throughput pyrosequencing approach. Principal findings are as follows. First, diversity (H _Shannon) and richness (S _Chao1) indices of bacterial community, but not of fungal community, were linearly decreased over time and corresponded to a decline of soil sustainability represented by yield decline and disease incidence increase. Second, Fusarium, the only soilborne pathogen-associated fungal genus substantially detected, was linearly increased over time in abundance and was closely associated with yield decline. Third, Fusarium abundance was negatively correlated with soil organic matter (OM) and total nitrogen (TN) but positively with electrical conductivity (EC). Fourth, Fusarium was correlated in abundances with 6 bacterial taxa over time.

Conclusions

Soil bacterial and fungal communities exhibited differential responses to the potato monoculture. The overall soil bacterial communities were shaped by potato monoculture. Fusarium was the only soilborne pathogen-associated genus associated with disease incidence increase and yield decline. The changes of soil OM, TN and EC were responsible for Fusarium enrichment, in addition to selections by the monoculture crop. Acidobacteria and Nitrospirae were linearly decreased over time in abundance, corresponding to the decrease of OM, suggesting their similar ecophysiologial trait. Correlations between abundance of Fusarium with several other bacterial taxa suggested their similar behaviors in responses to potato monoculture and/or soil variables, providing insights into the ecological behaviors of these taxa in the environment.     

山东半岛南部海湾底栖动物群落生态特征及其与水环境的关系

2006-2007年对山东半岛南部4个海湾(荣成湾、桑沟湾、靖海湾和五垒岛湾)19个站位的底栖动物群落结构特征进行了研究,并对14个环境因素和底栖动物群落生态特征分别进行主成分分析和Spearman相关分析。结果显示,荣成湾、桑沟湾和靖海湾的底栖动物种类中,多毛类所占比例最高,而五垒岛湾仅秋、冬季多毛类所占比例最高。根据聚类分析和非度量多维标度方法分析,4季底栖动物群落均可分为2个群落,春、冬季的第一聚群为靖海湾和五垒岛湾,第二聚群为荣成湾和桑沟湾。秋季荣成湾、桑沟湾、靖海湾组成第一聚群,第二聚群由五垒岛湾构成。夏季,底栖动物Shannon-Wiener多样性指数(H')与采样深度和总碱度呈显著正相关,与水温呈极显著的负相关关系。秋季,与硝酸盐呈负相关关系,说明富营养化对山东半岛南部4个海湾大型底栖动物群落产生了一定负面影响。ABC曲线法分析显示,荣成湾和桑沟湾底栖动物的丰度优势度曲线与生物量优势度曲线相交,表明荣成湾和桑沟湾大型底栖动物群落处于中度干扰状态,密集的养殖活动可能对其生态系统带来了巨大影响,加强海水养殖管理,强化生态健康养殖理念,合理利用海洋生物资源,对大型底栖动物群落的稳定性具有重要意义。     

Interpreting Ecological Diversity Indices Applied to Terminal Restriction Fragment Length Polymorphism Data: Insights from Simulated Microbial Communities

Ecological diversity indices are frequently applied to molecular profiling methods, such as terminal restriction fragment length polymorphism (T-RFLP), in order to compare diversity among microbial communities. We performed simulations to determine whether diversity indices calculated from T-RFLP profiles could reflect the true diversity of the underlying communities despite potential analytical artifacts. These include multiple taxa generating the same terminal restriction fragment (TRF) and rare TRFs being excluded by a relative abundance (fluorescence) threshold. True community diversity was simulated using the lognormal species abundance distribution. Simulated T-RFLP profiles were generated by assigning each species a TRF size based on an empirical or modeled TRF size distribution. With a typical threshold (1%), the only consistently useful relationship was between Smith and Wilson evenness applied to T-RFLP data (TRF-E_var) and true Shannon diversity (H′), with correlations between 0.71 and 0.81. TRF-H′ and true H′ were well correlated in the simulations using the lowest number of species, but this correlation declined substantially in simulations using greater numbers of species, to the point where TRF-H′ cannot be considered a useful statistic. The relationships between TRF diversity indices and true indices were sensitive to the relative abundance threshold, with greatly improved correlations observed using a 0.1% threshold, which was investigated for comparative purposes but is not possible to consistently achieve with current technology. In general, the use of diversity indices on T-RFLP data provides inaccurate estimates of true diversity in microbial communities (with the possible exception of TRF-E_var). We suggest that, where significant differences in T-RFLP diversity indices were found in previous work, these should be reinterpreted as a reflection of differences in community composition rather than a true difference in community diversity.     

Endophytic yeasts in <Emphasis Type="Italic">Malus domestica</Emphasis> and <Emphasis Type="Italic">Pyrus communis</Emphasis> fruits under anthropogenic impact

Yeast abundance and species diversity on the surface and in inner tissues of Malus domestica and Pyrus communis fruits under high anthropogenic impact in the city of Moscow (Russia) were studied. Results demonstrated that abundance of epiphytic yeasts on the fruits increased gradually, reaching the maximum of 3.2 × 10⁴ CFU/g on mature fruits. During summer, abundance of endophytes did not change significantly (variation near 2.5 × 10³ CFU/g) until complete maturation, while in September their numbers increased to 10⁴ CFU/g. Basidiomycetous yeasts (Filobasidium wieringae, F. magnum, Rhodotorula glutinis, and Rhodosporidiobolus colostri) predominated on the fruit surface. Ascomycetous species were the most diverse group inside the fruits, which quantitatively increased through maturation. It was found that the share of opportunistic species Candida parapsilosis in internal tissues was significant during the entire period of fruit formation and development under anthropogenic impact in the city. Specific properties of epiphytic and endophytic yeast communities developing in natural ecological niches under synanthropic conditions and anthropogenic impact are discussed.     

Response of soil nematode community structure and diversity to long-term land use in the black soil region in China

Soil nematodes are sensitive to environmental changes and are used widely as indicators of soil conditions. The community structure and diversity of soil nematodes were studied in different long-term land use regimes in the black soil area in Northeast China. The land use regimes were maintained for 22?years, and included crop land (CL), grass land (GL) and bare land (BL). Soil samples were taken throughout the growing season, and nematodes were extracted and identified. A total of 39 nematode genera with relative abundance over 0.1?% were identified. Heterodera was the dominant genus in CL; Boleodorus was the dominant genus in GL, and Boleodorus, Eucephalobus and Filenchus were the dominant genera in BL. Land use had a significant effect on abundance of all soil nematode tropic groups and ecological indices. Sampling time had an effect on soil nematode abundance, but only on three of the eight nematode ecological indices MI (maturity index of free-living nematode), CI (channel index) and EI (enrichment index). SR (species richness index) was highest in GL where plant species diversity was also high. The CI was the highest in BL among three land uses, which means the soil food web dominated, with fungal decomposition channels in BL. Soil nematode community structure and diversity was shown to be an effective and informative tool for analyzing ecological aspects of land use in black soil regions. The data are inconclusive as to whether the effect of land use on soil nematode parameters is direct, or indirect via inducing changes in soil physicochemical properties.     

Earthworm communities a bioindicator of arable land management practices: A case study in semiarid region of India

The abundances and activities of earthworms in arable lands depend strongly on management practices and; therefore earthworm can act as a potential bioindicator of land use practices. In this study earthworm diversity and abundances was measured in three differently managed agro-ecosystems i.e. conventional, integrated and organic, in some sites of northern semiarid region of India. The maximal numbers of earthworm occurrence were in integrated farming system (100%, all studied sites showed the presence) followed by organically managed (70%) and conventional (18.9%) agro-ecosystems. A total of six species belonging to four different families were identified during this survey and all recorded earthworm species were present in organically managed agro-ecosystems, while integrated and conventional arable lands exhibited only three earthworm species. The abundance of earthworms in arable system was also directly related to the management practices. The values of ecological indices e.g. Shannon diversity (H′), species dominance (C), the species richness (S) and evenness (E) indicated the anthropogenic pressure on earthworm communities in arable lands of northern India.     

Colonization of Pneumatopteris afra (Christ) Holttum and its impact on some resident wetland communities in Nigeria

The widespread of invasive plants across the world has increased the risk of extinction of native plants. It is then necessary for understanding the ecological impacts of invasive plants on neighbouring plant communities where they are found. This study aimed to assess the impacts of the abundance of Pneumatopteris afra on plant diversity of some invaded wetlands in Lafia, Nigeria. Three wetlands with size 500 × 500 m² each were chosen. Forty 1.5 m × 1.5 m quadrats were laid at 10 m intervals across four 200 m transects at each wetland. The abundance of each plant species within the quadrats was counted and was used to estimate the diversity indices. The impact of the abundance of P. afra on the wetland communities was determined using Pearson correlation coefficients and linear regression models. A total of nine neighbouring plant species including P. afra were identified in all the sites. P. afra has the highest relative frequency and abundance in all the sites. Shannon and Simpson's diversity indices of all the sites are less than 2 showing that they are less diverse. The abundance of P. afra exhibited negative relationships with the diversity indices. Regression models also showed inverse relationships between P. afra and the diversity indices. The colonization of these wetlands by P. afra might be due to its ability to maximize disturbances and limit the growth and expansion of surrounding plants.     

云南花椒园中昆虫群落特征的海拔间差异分析

分析了金沙江畔7个不同海拔区域花椒园中昆虫群落特征的动态变化及其与温、湿度变化的关系。结果表明:花椒园中昆虫群落的多样性、均匀度、丰富度、Ss/Si、Sn/Sp指标随海拔升高先增加后减少,而个体数、优势集中性指数则随海拔升高先减少后增加;低海拔(450—750 m)区域花椒园中由于总体温度高、湿度低,较高海拔(1300—1550 m)区域总体温度低、湿度高,均不利昆虫群落多样性、均匀度、丰富度、Ss/Si、Sn/Sp指标的提高和群落的稳定,而中等海拔(750—1300 m)区域的温度、湿度较为适中,昆虫群落的物种数及个体数量均相对较高,昆虫群落多样性、均匀度、丰富度、Ss/Si、Sn/Sp指标也较高,群落较稳定;相反,低海拔、较高海拔区域花椒园中昆虫群落优势集中性指数较高,而中等海拔区域却相对较低。综合分析表明,海拔高度及温湿度对花椒园昆虫群落特征影响较大,而海拔高度及温湿度的测量和分析较为方便。     

Influence of short periods of increased water temperature on species composition and photosynthetic activity in the Baltic periphyton communities

Periphyton plays a vital ecological role in shallow, well-lit ecosystems which are vulnerable to rapidly changing environmental conditions, including raising temperature due to global warming. Nevertheless, little is known on the effect of increased temperatures on the taxonomic structure and functioning of periphytic communities. In this study, the influence of short-term temperature increase on the species composition and photosynthetic activity of the Baltic periphytic communities was investigated. The collected communities were exposed to increased temperature of 23 °C (ca. 4 °C above the summer average) for 72 h. After this time, species composition of the communities was studied under light microscope and their photosynthetic performance was evaluated using PAM fluorometry. Results showed that the biomass of cyanobacteria slightly increased. There were significant changes in the abundance of diatom species, among which Fragilaria fasciculata and Navicula ramosissima, were negatively affected by the elevated temperature and their cell number significantly decreased, whereas, Diatoma moniliformis and N. perminuta were stimulated by the increased temperature. Additionally, a shift towards higher abundance of smaller taxa was also observed. The higher quantum yield of photosystem II (PSII) (higher ΦPSII) accompanied by the lower value of non-photochemical quenching (NPQ) observed in communities kept at 23 °C showed more efficient photosynthesis. This was further confirmed by the changes in rapid light curves (higher photosynthetic capacity, rETR_max, and photoacclimation index, E_k). The obtained data constitute evidence that short periods of increased temperature significantly affect the structure and functioning of the Baltic periphyton.     

May Rare Metallophytes Benefit from Disturbed Soils Following Mining Activity? The Case of the Crepidorhopalon tenuis in Katanga (D. R. Congo)

Cuprophytes are plants that mostly occur on Cu‐rich soil. In South Central Africa, these species are threatened by intensive mining exploitation destroying their habitats. Crepidorhopalon tenuis (Scrophulariaceae) is a tiny annual cuprophyte endemic to the Zambesian center of endemism and is particularly abundant in the Lubumbashi area. We investigate here the ecological niche of C. tenuis through the analyses of its abundance and distribution in relation to soil factors, plant community composition, and anthropogenic perturbations. Soil and vegetation data were collected in seven sites (five metalliferous and two nonmetalliferous). The current study shows that C. tenuis has its ecological optimum on copper‐rich soil and can be referred to as an elective pseudometallophyte. This species is rare in primary steppic savanna on natural metalliferous soil. Its frequency and abundance peak in pioneer communities on bare soil. In particular, the species showed a surprising ecological plasticity as it was able to benefit from anthropogenic disturbance and to colonize the large areas of bare, contaminated soil left over by mining activities. Our results strongly suggest that C. tenuis was a very rare species in natural metalliferous communities, restricted to patchy areas of open soil in steppic savanna. Recent anthropogenic habitats may have conservation value for some rare metallophytes with colonizing traits and low competitive ability.     

Invasive bivalves increase benthic communities complexity in neotropical reservoirs

Invasive bivalves often act as ecosystem engineers, generally causing physical alterations in the ecosystems in which they establish themselves. However, the effects of these physical alterations over benthic macroinvertebrate communities’ structure are less clear. The objective of this study was to characterize the ecological effects of the invasive bivalves Corbicula fluminea and Limnoperna fortunei on the structure of benthic macroinvertebrate communities in neo-tropical reservoirs. Three hypotheses were tested: (1) invasive bivalves act as facilitator species to other benthic macroinvertebrates, resulting in communities with higher number of species, abundance and diversity; (2) invasive bivalves change the taxonomic composition of benthic macroinvertebrate communities; (3) invasive bivalves increase the complexity of benthic macroinvertebrate communities. For that it was used data from 160 sampling sites from four reservoirs. We sampled sites once in each area, during the dry season from 2009 to 2012. The first hypothesis was rejected, as the presence of invasive bivalves significantly decreased the host benthic communities’ number of species and abundance. The second hypothesis was corroborated, as the composition of other benthic macroinvertebrates was shown to be significantly different between sites with and without invasive bivalves. We observed a shift from communities dominated by common soft substrate taxa, such as Chironomidae and Oligochaeta, to communities dominated by the invasive Gastropoda Melanoides tuberculata. The biomass data corroborated that, showing significantly higher biomass of M. tuberculata in sites with invasive bivalves, but significantly lower biomass of native species. Benthic macroinvertebrate communities presenting invasive bivalves showed significantly higher eco-exergy and specific eco-exergy, which corroborate the third hypothesis. These results suggest that while the presence of invasive bivalves limits the abundance of soft bottom taxa such as Chironomidae and Oligochaeta, it enhances benthic communities’ complexity and provide new energetic pathways to benthic communities in reservoirs. This study also suggests a scenario of invasion meltdown, as M. tuberculata was facilitated by the invasive bivalves.     

Ecological and Evolutionary Effects of Stickleback on Community Structure

Species’ ecology and evolution can have strong effects on communities. Both may change concurrently when species colonize a new ecosystem. We know little, however, about the combined effects of ecological and evolutionary change on community structure. We simultaneously examined the effects of top-predator ecology and evolution on freshwater community parameters using recently evolved generalist and specialist ecotypes of three-spine stickleback (Gasterosteus aculeatus). We used a mesocosm experiment to directly examine the effects of ecological (fish presence and density) and evolutionary (phenotypic diversity and specialization) factors on community structure at lower trophic levels. We evaluated zooplankton biomass and composition, periphyton and phytoplankton chlorophyll-a concentration, and net primary production among treatments containing different densities and diversities of stickleback. Our results showed that both ecological and evolutionary differences in the top-predator affect different aspects of community structure and composition. Community structure, specifically the abundance of organisms at each trophic level, was affected by stickleback presence and density, whereas composition of zooplankton was influenced by stickleback diversity and specialization. Primary productivity, in terms of chlorophyll-a concentration and net primary production was affected by ecological but not evolutionary factors. Our results stress the importance of concurrently evaluating both changes in density and phenotypic diversity on the structure and composition of communities.     

Versuch einer Klassifizierung der ruderalenAgropyron repens- undCalamagrostis epigejos-Gesellschaften unter Anwendung der deduktiven Methode

Agropyron repens (L.) P. B. andCalamagrostis epigejos (L.)Roth belong to species with a very wide ecological and phytocoenological amplitude which have spread secondarily to anthropogenic habitats of various origin and different ecological properties. With regard to the definition of association adopted by the International Botanical Congress in Amsterdam (1935), the plant communities dominated by these species cannot be typified at the level of association. Using the deductive method of syntaxonomic classification, however, these communities may be referred, as derivate communities, to various higher units of the present system. This method reflects synecological and syngenetic differences among the individual types of communities.