Ecological impacts of non-native Pacific oysters (<Emphasis Type="Italic">Crassostrea gigas</Emphasis>) and management measures for protected areas in Europe

Pacific oysters are now one of the most ‘globalised’ marine invertebrates. They dominate bivalve aquaculture production in many regions and wild populations are increasingly becoming established, with potential to displace native species and modify habitats and ecosystems. While some fishing communities may benefit from wild populations, there is now a tension between the continued production of Pacific oysters and risk to biodiversity, which is of particular concern within protected sites. The issue of the Pacific oyster therefore locates at the intersection between two policy areas: one concerning the conservation of protected habitats, the other relating to livelihoods and the socio-economics of coastal aquaculture and fishing communities. To help provide an informed basis for management decisions, we first summarise evidence for ecological impacts of wild Pacific oysters in representative coastal habitats. At local scales, it is clear that establishment of Pacific oysters can significantly alter diversity, community structure and ecosystem processes, with effects varying among habitats and locations and with the density of oysters. Less evidence is available to evaluate regional-scale impacts. A range of management measures have been applied to mitigate negative impacts of wild Pacific oysters and we develop recommendations which are consistent with the scientific evidence and believe compatible with multiple interests. We conclude that all stakeholders must engage in regional decision making to help minimise negative environmental impacts, and promote sustainable industry development.     

Conservation status of habitats (Directive 92/43 EEC) of coastal and low hill belts in a Mediterranean biodiversity hot spot (Gargano – Italy)

The Gargano is one of the richest Mediterranean areas in biodiversity. The work reports an assessment of the presence and conservation status of the habitats according to the 92/43/EEC Directive of Gargano coastal and low hill belts, their relationships with plant communities, threatened species, phytoclimatology, threats, and suggestions for management purposes. The field surveys revealed 33 habitats of Directive, and 6 of them are priority (1150^* Coastal lagoons, 2250^* Coastal dunes with Juniperus ssp., 2270^* Wooded dunes with Pinus pinea and/or Pinus pinaster, 6220^* pseudo-steppe with grasses and annuals of the Thero-Brachypodietea, 7210^* Calcareous fens with Cladium mariscus and species of the Caricion davallianae, 91AA^* Eastern white oak woods). The updates of six Special Areas Conservation and three Special Protection Areas of Natura 2000 network are provided.     

Habitat conservation prioritization: A floristic approach applied to a Mediterranean wetland network

The importance of plant communities for conservation purposes is recognized in their inclusion in the “Habitat Directive” (92/43 EEC), that relates habitat types to plant community syntaxonomic units. However, habitat definitions in the Habitat Directive lead to several inaccuracies in local habitat characterization. Several wetland plant communities (and their corresponding habitats), rare in the Mediterranean basin, are not included in the Habitat Directive. This study proposes criteria for assessing the conservation importance of habitats. It deals with plant community types at the alliance level, as promising units for setting conservation priorities. The principle criteria considered as drivers for setting alliance conservation values are the distribution and abundance of plant species of conservation interest and their fidelity to a plant community. Multivariate methods were used, and a quantitative floristic index of alliance conservation priority was created. This procedure was applied to an important wetland in central Italy. Results emphasize: (i) high conservation values of some alliances not listed in the Habitat Directive, confirming various gaps in the current conservation law affecting Mediterranean wetlands; (ii) that habitats widely distributed in other biogeographical areas, may greatly underestimate their conservation importance in Mediterranean region; (iii) need to consider regional peculiarities when setting conservation priorities.     

Human activities and climate variability drive fast‐paced change across the world's estuarine–coastal ecosystems

Time series of environmental measurements are essential for detecting, measuring and understanding changes in the Earth system and its biological communities. Observational series have accumulated over the past 2–5 decades from measurements across the world's estuaries, bays, lagoons, inland seas and shelf waters influenced by runoff. We synthesize information contained in these time series to develop a global view of changes occurring in marine systems influenced by connectivity to land. Our review is organized around four themes: (i) human activities as drivers of change; (ii) variability of the climate system as a driver of change; (iii) successes, disappointments and challenges of managing change at the sea‐land interface; and (iv) discoveries made from observations over time. Multidecadal time series reveal that many of the world's estuarine–coastal ecosystems are in a continuing state of change, and the pace of change is faster than we could have imagined a decade ago. Some have been transformed into novel ecosystems with habitats, biogeochemistry and biological communities outside the natural range of variability. Change takes many forms including linear and nonlinear trends, abrupt state changes and oscillations. The challenge of managing change is daunting in the coastal zone where diverse human pressures are concentrated and intersect with different responses to climate variability over land and over ocean basins. The pace of change in estuarine–coastal ecosystems will likely accelerate as the human population and economies continue to grow and as global climate change accelerates. Wise stewardship of the resources upon which we depend is critically dependent upon a continuing flow of information from observations to measure, understand and anticipate future changes along the world's coastlines.     

Human trampling effects on Mediterranean coastal dune plants

Coastal habitats are particularly vulnerable to recreational impacts because these environments are highly dynamic and continually change in response to biotic and abiotic factors. Sand dune communities are worldwide characterized by high levels of biodiversity, but are often affected by human-induced impacts as those caused by tourist trampling. To understand the effects of human frequentation, trampling, and other human-induced impacts, fencing experiments have been traditionally carried out on coastal dunes. Since in touristic areas dune systems are subjected to different intensities of human frequentations rather than to opening or fencing, in this study we explore the effects of accessibility on vascular plants cover. This study tests the hypothesis that human frequentation on beaches affects spatio-temporal variability of vascular plant abundance on dunes by comparing the plant assemblages of high and low accessible sites in North-East Sardinia (Italy). Our results show that accessibility plays a crucial role in conditioning the percentage of vegetation cover in Mediterranean dunes. In fact, not only we found a perennial vegetation cover that was significantly higher in the sites with low accessibility (and consequently low frequentation), but we also showed that at the sites with high accessibility there were significant differences in vegetation cover between times of sampling (cover was higher before than after summer): on the contrary, differences in perennial vegetation cover among times were not significant at the low frequentation sites. After summer, the difference among low and high frequentation sites in species composition and cover was >90%. Multivariate analysis identified those species that play a pivotal role in differentiating the low and the high frequentation sites. Among them, Crucianella maritima and Sporobolus virginicus can be considered as differential species. Overall, our data show vegetation and plant species responses to human-induced impacts, and are therefore important to support conservation actions in Mediterranean coastal areas interested by mass tourism.     

Marine biodiversity: patterns, threats and conservation needs

Marine biodiversity is higher in benthic rather than pelagic systems, and in coasts rather than the open ocean since there is a greater range of habitats near the coast. The highest species diversity occurs in the Indonesian archipelago and decreases radially from there. The terrestrial pattern of increasing diversity from poles to tropics occurs from the Arctic to the tropics but does not seem to occur in the southern hemisphere where diversity is high at high latitides. Losses of marine diversity are highest in coastal areas largely as a result of conflicting uses of coastal habitats. The best way to conserve marine diversity is to conserve habitat and landscape diversity in the coastal area. Marine protected areas are only a part of the conservation strategy needed. It is suggested that a framework for coastal conservation is integrated coastal area management where one of the primary goals is sustainable use of coastal biodiversity.     

Assessing the potential of a protected area for fish conservation in a neotropical wetland

Freshwater habitats are among the most impacted ecosystem on Earth. Consequently, reserves have been implemented in an attempt to reduce the threat to freshwater biodiversity. However, few studies have evaluated how effective these protected areas (PA) are for the conservation of freshwater organisms. In the present study, we compared species richness, community composition and density of small-bodied fishes between lagoons within an eight-year-old reserve (i.e. protected lagoons) with those outside the reserve (i.e. unprotected lagoons) in a river-floodplain system that is exposed to seasonal flooding. The unprotected lagoons have been submitted to a light fishing pressure mainly targeting small-sized fishes for sale as baits. Our results showed no differences between the lagoons inside the reserve with those outside in any of the community properties measured. However, we registered an overall tendency of abundance reduction among the species used as baits in unprotected lagoons. Considering the high degree of oversight in the PA and the low fishing pressure among unprotected lagoons, it is possible that the positive effects promoted by the reserve on fish assemblages are being exported towards unprotected lagoons and thus offsetting a portion of the anthropogenic impacts. We conclude that the protection provided by the reserve is very efficient in river-floodplain systems, because not only it protects the biota inside the reserve but also act as a source of propagules to unprotected areas during the rainy season when all the aquatic subsystems are connected by the flood.     

Helminth communities in eels Anguilla anguilla from Adriatic coastal lagoons in Italy

The composition and diversity of the total and intestinal component and infra-communities were determined in eels Anguilla anguilla from three shallow lagoons on the Adriatic coast of Italy to determine whether the helminth communities would differ in composition and structure from those in eels from lagoons on the Tyrrhenian coast. The lagoons differed in respect of their management regimes and the extent of freshwater influx. Both freshwater and marine species of helminths were found in the eels in all three lagoons, but the freshwater component was richer in Valle Figheri. A suite of three digenean eel specialist species occurred in all three lagoons, of which any two members dominated each community. This conferred a high degree of similarity between the communities of the three lagoons. The same three species also dominated helminth communities in eels in lagoons along the Tyrrhenian coast of Italy, and compositional similarity levels were similar within and between western and eastern groups. Species richness was higher in the component communities of the eels of the Adriatic lagoons when compared to the Tyrrhenian ones, but diversity and dominance indices were of a similar order of magnitude and range. Intestinal helminth communities were richer and more diverse in two of the Adriatic lagoons because the proportion of eels with zero or one helminth species was, unusually, in the minority. It was nevertheless concluded that infracommunity structure was similar in eels from both western and eastern lagoons and that the hypothesis that it would differ in Adriatic lagoons could not be supported. The findings provide further evidence of the similarity in composition and structure of helminth communities in eels from coastal lagoons throughout Europe.     

Characterization of tropical near-shore fish communities by coastal habitat status on spatially complex island systems

Synopsis We present a protocol for characterizing near-shore fish habitat as well as fish communities for Andros Island, Bahamas, a complex coastal-reef island system. Benthic assessments and beach seine surveys were carried out at sites varying in coastal and benthic characteristics. Temporal variability affected fish community composition, indicating that attempts to characterize a fish community should include sampling evenly across tides, times of day, and seasons. Univariate and multivariate analyses revealed that each site harbored a unique fish community, with the greatest variability within each site attributed to seasonal changes. Measures of diversity (Shannon–Weiner Index and number of species) were markedly different at sites with varying coverage of seagrass and macro-algae and extents of disturbance. Total abundance of fishes was positively related to the percent of bare sand. We suggest that thorough sampling of coastal fish communities can be applied to comparative and long-term studies. This protocol for the characterization of complex island habitats can be applied to ecological studies aimed at understanding the responses of fishes to small-scale changes in coastal areas and habitat structure due to land use and shoreline alterations.     

Inter-Annual Variability of Soft Bottom Macrofaunal Communities in Two Ionian Sea Lagoons

Inter-annual variation in the composition of the soft bottom macrobenthic communities of two undisturbed lagoons, in Amvrakikos Gulf, Ionian Sea, Greece, was investigated over three consecutive summers. The environmental parameters that showed the greatest variability were organic carbon of the sediment and salinity. The species found were typical of lagoonal systems, the most common and abundant of which were Abra ovata, Mytilaster minimus and, in the most enclosed areas, larvae of chironomids. Multivariate analysis registered community changes, which were mostly caused by changes in species dominance. Structural community characteristics such as number of species, number of individuals and diversity did not show significant differences among years except in the stations with least water exchange with the sea.     

Spatial and temporal variations in the trematode component community of the mudsnail Hydrobia ventrosa in relation to the occurrence of waterfowl as definitive hosts

The component community of larval trematodes infecting the mudsnail Hydrobia ventrosa (Montagu) was examined in coastal lagoons of the southern Baltic Sea among different host subpopulations in relation to the structure of the waterfowl community. The 10 trematode species observed represent the families Notocotylidae (1), Echinostomatidae (1 or 2), Heterophyidae (2). Monorchidae (1). Microphallidae (3 or 4), Psilostomatidae (1), and Hemiuridae (1). Eight of these species infect waterfowl as adults. The structure of the trematode communities was similar between sampling sites. Seven trematode taxa were commonly found at all sampling sites. Prevalence values of the 6 most abundant taxa, which infect birds as final hosts, were significantly different between neither sampling sites nor across year. Overall trematode prevalence in H. ventrosa fluctuated seasonally. Prevalence usually peaked in summer between July and September or October. Low prevalences were observed in late winter and early spring. In contrast, the seasonal maximum in waterfowl numbers differed between areas because of significant spatial differences in the bird community structure. The species composition of the component trematode community of H. ventrosa in the coastal lagoons of the southern Baltic Sea is more or less independent of the species composition of the waterfowl community. This independence presumably results from the lack of host specificity in most of the observed trematode species. Otherwise, the low host specificity in combination with the enormous waterfowl diversity in the coastal lagoons might explain the stability of the prevalence pattern of the component trematode community.     

Optimizing coastal and marine spatial planning through the use of high-resolution benthic sensitivity models

Effective management of coastal and marine resources requires knowledge of how community sensitivity varies spatially. With this in mind, we developed a benthic sensitivity index (SI), based on the distribution and abundance of five ecological groups that can be used to assess community tolerance to organic enrichment and other disturbances. The index, projected as a high-resolution map, ranks communities from those dominated by sensitive and ecologically important species (i.e. low SI values) to those composed mainly of tolerant and/or opportunistic species (i.e., high SI values). Applying our model to a multiple-use case study in southeast Brazil, we were able to show considerable variability in the sensitivity of communities across the study area that was relatively stable over time. This allowed us to evaluate the possible direct (i.e., spatially overlapping) and indirect effects (i.e., cumulative changes to the physical environment) of a range of activities on sensitive and ecologically diverse benthic communities. Our approach and the resulting high-resolution maps hold promise for a range of spatial planning applications, including the development of coastal infrastructure, assessments of the representativeness of marine protected areas and other activities such as the selection of appropriate locations for dredge spoil dumping. Overall, we present a novel and transparent way of extrapolating limited survey data to provide spatial and temporal information on the sensitivity of benthic communities in multiple-use coastal and marine areas.     

The intersection of ecological risk assessment and plant communities: an analysis of <Emphasis Type="Italic">Agrostis</Emphasis> and <Emphasis Type="Italic">Panicum</Emphasis> species in the northeastern U.S.

Ecological risk assessments for grass species with novel traits are advisable, or required, in order to identify potential environmental harms prior to large-scale cultivation. Credible risk assessments are built upon knowledge of the communities that could be negatively affected by crop-to-wild gene flow, new weeds, or invasive plants. This study focused on two cultivated grasses with different life histories: the exotic, weedy Agrostis stolonifera (creeping bentgrass) and the native Panicum virgatum (switchgrass). Vascular plant communities were analyzed in 190 transects (50 m) in ten habitat types across two ecoregions (inland and coastal) in the northeastern U.S. Ordination plots and dendrogram analysis showed clustering of inland plant community assemblages within habitat types, while coastal plant communities were similar across the habitats studied. Agrostis and Panicum species had unequal distribution across the habitat types and ecoregions. Agrostis species were more common in the inland ecoregion and habitats receiving moderate management or disturbance events. In both ecoregions, A. stolonifera had high co-occurrence values with other exotic Agrostis species, suggesting potential for interspecific gene flow. P. virgatum was most common in inland roadside and wasteland habitats, but was distributed equally in the three coastal habitats. Co-occurrence between P. virgatum and congenerics was infrequent, although one transect had both P. virgatum and the state-listed coastal species Panicum amarum. This is the first study to characterize Agrostis and Panicum plant communities and distribution providing the basis for ecological risk assessments, coexistence-strategies, and geographic exclusion zones.     

Seasonal changes in the abundance and distribution of submerged aquatic vegetation in a highly managed coastal lagoon

The inflow of fresh water into coastal lagoons is a key factor influencing the structure and function of these ecosystems. Biscayne Bay, a coastal lagoon adjacent to the city of Miami, is located downstream of the Everglades ecosystem where the extensive water management system now in place has modified the historical hydrology, replacing groundwater and overland flows with pulsed releases from canals. In areas where canals discharge directly into littoral habitats, an environment with low-mean salinity and high-salinity variability is created. In this study, we characterize the salinity patterns of nearshore habitats (<500 m from shore) and document patterns of seasonal abundance and distribution of submerged aquatic vegetation (SAV) to evaluate the impacts of water management practices. Seagrasses were the principal component of the SAV community during the 2005 dry season (mean cover = 25.5%), while macroalgae dominated during the wet season (mean cover = 33.4%). The distribution and abundance of SAV were directly related to the tolerance of each taxon to salinity patterns. Seagrass species with high tolerance to low and variable salinity such as Halodule wrightii and Ruppia maritima were found only in canal-influenced areas and increased in abundance and spatial distribution in the wet season when freshwater inflow is highest. The dominance of rhizophytic macroalgae during the wet season was determined by the appearance and high abundance of Chara, a taxon commonly associated with freshwater environments. Thalassia testudinum, the most abundant seagrass species, was found throughout the study region, but decreased in abundance in the canal-influenced areas during the wet season when lower, more variable salinity resulted in lowered productivity. The data presented here showed a significant relationship between salinity patterns and the seasonal abundance and distribution of SAV. These findings support the use of SAV as appropriate indicators of changes in water quality resulting from future restoration projects associated with the Everglades Restoration Plan, which will once again modify the delivery of fresh water into littoral habitats with unknown ecological consequences. Handling editor: S. M. Thomaz     

Stream characteristics and their implications for the protection of riparian fens and meadows

1. Running waters, including associated riparian areas, are embraced by international legal frameworks outlining targets for the preservation, protection and improvement of the quality of the environment. Interactions between stream and river processes and riparian habitats have not received much attention in the management of stream ecosystems, and integrated measures that consider both the ecological status of streams and rivers (sensu EU Water Framework Directive, WFD) and the conservation status of riparian habitats and species (sensu EU Habitats Directive, HD) are rare. 2. Here, we analysed the influence of stream size, morphology and chemical water characteristics for the distribution of water‐dependent terrestrial habitat types, i.e. alkaline fens, periodically inundated meadows and meadows in riparian areas in Denmark using an extensive data set covering a total of 254 stream reaches. A species‐based classification model was used to translate species lists into a standardised interpretation of habitat types protected by the HD in Denmark. 3. No size dependency was found regarding the distribution of fen and meadow vegetation. Instead, the distribution of fen and meadow vegetation was strongly affected by the morphology of the streams. Alkaline fens, periodically inundated meadows and meadows occurred six, five and four times, respectively, less frequently along channelised compared with natural stream reaches. Our results indicate that stream channelisation strongly interfered with the natural hydrology of riparian areas, affecting conditions needed to sustain protected fen and meadow communities. 4. We also found that water chemistry strongly influenced the occurrence of fen and meadow vegetation in riparian areas. The probability of finding fen and meadow vegetation was reduced when total phosphorus (TP) concentration exceeded 40–50 μg P L^?1, whereas meadow vegetation responded less strongly to TP. 5. Our findings highlight the importance of restoring hydrology of riparian areas to improve conditions for fen and meadow vegetation, but also that the water chemistry should be considered when measures that increase hydrological connectivity result in an increase in the probability of flooding.     

Diet of otters (Lutra lutra) in closely associated freshwater, brackish and marine habitats in south-west Portugal

The diet of otters was studied in closely associated freshwater, brackish and marine habitats, from spraints collected on the Portuguese south-west coast over an 18-month period. In areas where marine prey was the only available resource, diet was dominated by blennies, wrasses and gobies, but other prey was taken in areas near coastal lagoons, marshes and estuaries. Eels and amphibians were considered the typical prey of freshwater habitats, and grey mullet the typical prey of brackish water habitats. If the inland habitats near the coast were large enough, otters preferred to forage there rather than in the sea. In one area where otters alternatively used marine and inland habitats, the former were used most extensively in autumn and winter, and the latter in spring and summer. It is suggested that otters prefer to forage inland rather than in the sea.     

Nitrogen cycling in coastal marine ecosystems

It is generally considered that nitrogen availability is one of the major factors regulating primary production in temperate coastal marine environments. Coastal regions often receive large anthropogenic inputs of nitrogen that cause eutrophication. The impact of these nitrogen additions has a profound effect in estuaries and coastal lagoons where water exchange is limited. Such increased nutrient loading promotes the growth of phytoplankton and fast growing pelagic macroalgae while rooted plants (sea-grasses) and benthic are suppressed due to reduced light availability. This shift from benthic to pelagic primary production introduces large diurnal variations in oxygen concentrations in the water column. In addition oxygen consumption in the surface sediments increases due to the deposition of readily degradable biomass. In this review the physico-chemical and biological factors regulating nitrogen cycling in coastal marine ecosystems are considered in relation to developing effective management programmes to rehabilitate seagrass communities in lagoons currently dominated by pelagic macroalgae and/or cyanobacteria.     

Community structure and association of waterbirds with spatial heterogeneity in the Bahia Magdalena-Almejas wetland complex, Baja California Sur, Mexico

Community structure and association of waterbirds with spatial heterogeneity in the Bahia Magdalena-Almejas wetland complex, Baja California Sur, Mexico. To test the hypothesis that spatial heterogeneity determines waterbird diversity in a coastal wetland, we compared waterbird density, diversity, and species composition among various habitats and landscapes units in Bahia Magdalena-Almejas, Baja California Sur, Mexico. Based on diversity patterns and bird distribution, we assessed the effect of coastal development on the waterbird community structure. To gather information on habitat features and waterbird populations we conducted waterbird censuses in 329 habitat segments along the internal coastline of the study area, from February 2002 to February 2003. We performed non-parametric analyses to test the null hypothesis of no diference on waterbird density, and diversity among landscape units and seasons. The species composition was evaluated using ordination techniques. Waterbird density was higher in winter and autumn in the three lagoons of the study area, particularly in the insular coast, sandy beach and dunes; it was higher in the few segments of antropic sustrate. Diversity was significantly higher in mangrove habitat along the peninsular coast, and in mangrove-dunes association on the insular coast. Although modification of coastal natural habitat and boat transit disturbance had no influence on waterbird density or diversity, the highest richness of waterbirds occurred in well preserved areas. Species composition analysis showed differences between Santo Domingo Channel and Magdalena Bay. Pelagic and mangrove habitat had a species composition difference higher than those associations in other habitats. Such differences in species assemblages by habitat and landscape units suggest that communities are structured according to the range of available natural resources in structurally complex habitats, and that dominant piscivorous waterbird species were favored in this community.     

Application of biotic and taxonomic distinctness indices in assessing the Ecological Quality Status of two coastal lakes: Caprolace and Fogliano lakes (Central Italy)

Marine biotic indices (AMBI, BENTIX) and the statistical tool M-AMBI (Multivariate AMBI) were applied as a comparative approach in assessing the Ecological Quality Status (EcoQS) of two Mediterranean coastal lakes (Caprolace and Fogliano lakes) situated in the Circeo National Park (Central Italy). The macrobenthic community was analysed using univariate indices (community structure), correspondence analysis (CA) and taxonomic distinctness indices (Δ⁺ and Λ⁺). The community composition showed a dominance of lagoonal species in both coastal lakes, while in Caprolace lake marine taxa were also found. Diversity index (H′) complies to ranges found in Mediterranean lagoons and taxonomic distinctness indices demonstrated that taxonomy structure is in accordance with natural variability ranges. Principal component analysis (PCA) on chemical parameters of water and sediment showed that both coastal lakes differ mainly in their organic matter composition. In fact, the protein fraction of bio-polymeric carbon prevails in Fogliano lake, while the ‘refractory’ component represented by carbohydrate fraction is predominant in Caprolace lake. The difference between the two coastal lakes was also demonstrated by co-inertia analysis (COIA) performed using abundance of species and concentrations of chemical parameters. The results from the application of the three biotic indices do not highlight a clear distinction between the two lagoons. However, the AMBI index provided a more suitable evaluation of EcoQS corresponding to ‘slightly polluted’ lagoons while M-AMBI and moreover BENTIX indices indicated a worsening situation. The biotic indices are widely used in assessing the EcoQS in marine environments, but their proper application in transitional waters would depend on a resettlement; thresholds established in the biotic index scale values need to be modified according to natural variability of transitional waters referring to abiotic conditions and abundance of tolerant species.