Diversity and spatial pattern of coral communities in the Red Sea upper twilight zone

Summary This is the first study based on numerical analysis of the abundance of 11 scleractinian corals of depths at between 100–210 m in the Red Sea twilight zone. Two distinct coral communities were found: a Leptoseris fragilis community at a depth of 100–130 m (zone 1) and a Dendrophillia horsti community below 130 m (zone 2, 3). Population densities and coral coverage are very low; distribution of individuals is highly clumped. Highest observed densities on 100 m² were 2720 individuals for L. fraglis, 2720 for D. horsti and 2260 for Javania insignis. Calculated coverage rates were maximally 3.6% (L. fragilis), 0.08% (D. horsti) and 0.11% (J. insignis). L. fragilis, the only symbiont bearing coral, was very abundant. It has an unusual depth range for a photosynthesising coral. Coral density is only weakly correlated with hard bottom coverage. Species diversity with an average of 8 species is highest at 120–170 m and decreases in shallower and deeper water. The study depth range is a transient zone for coral distribution. It contains the upper distribution limits of a few deep sea corals and the lower ones of several shallower water species. Ahermatypic corals, collected at 160–170 m depth, were transplanted from their original depth to 159, 118, 70 and 40 m; after one year most species survived transplantation far beyond their upper distributional limits. The symbiotic L. fragilis, collected at 120 m, survived transplantation to deep water (159 m) as well as shallow zones (90, 70 and 40 m). The study demonstrates the feasibility of line-transect methods for coral community studies with a submersible.     

Food uptake and the fine structure of the dinophytePaulsenella sp. an ectoparasite of marine diatoms

Summary Motile dinospores ofPaulsenella attach to a host diatom frustule, form a feeding tube, drive it between epi- and hypocingulum, pierce the host plasmalemma and suck up host cytoplasm gradually. This mode of endocytosis (myzocytosis) implies that the host plasmalemma is not ingested and that the host cytoplasm within the food vacuole is bounded only by the vacuolar membrane. The feeding tube is formed by the emergence of a preformed microtubular basket consisting of plates of microtubules. At its entrance into the cell body the feeding tube channel is surrounded by an electron-dense ring. Similar sphincters enclose the two exits through which the two flagella emerge. These sphincters are composed of microfibrils which reveal a cross striation when the fixative does not contain calcium ions. The flagellar bases as well as the internal part of the feeding tube are surrounded by a common cavity which is in open connection also with the ampullae of the pusule. The light and electron microscopical observations do not support the assumption that food uptake is driven by a flow of the membrane of the feeding tube channel caused by an interaction with the microtubular basket (as postulated for food uptake inSuctoria) but rather by an hydrostatic gradient which might be caused by rhythmical ion pumping and be based on the existence of the common cavity and the sphincters. Myzocytosis is inhibited by cytochalasin B.—The fine structure of dinospores and trophonts, especially with respect to the cell covering, the amphiesma, and the en- and excystment, is described.     

Precipitation of protein by ultracentrifuge with angle rotor

Precipitation of a protein by ultracentrifuge with an angle rotor was simulated by a model for sedimentation process. Assuming that the concentration of solute in an inclined ultracentrifugal tube is given by averaging the concentration in the imaginary horizontal tube, the governing equation describing the concentration in the rectangular-shaped tube with a uniform field of ultracentrifugal force for an inclined tube in an angle rotor was derived. The exact solution to this governing equation was obtained under the condition that the diffusion is absent or present. The dimensionless concentration which is reduced by the initial concentration can be expressed as the function of a dimensionless ultracentrifugal times ² t in case that the diffusion is absent, and as the function of dimensionless parameters andt ^*in case that the diffusion is present. From our first approximated model it is found that the precipitation of a protein by ultracentrifuge with an angle rotor proceeds more rapidly than that with a swing rotor whether diffusion is absent or present.List of Symbols c kg/m³ concentration of solute - c ⁰ kg/m³ initial concentration of solute - c ^A kg/m³ concentration of solute for angle rotor - c ^s kg/m³ concentration of solute for swing rotor - D cm²/s diffusion coefficient - d cm diameter of ultracentrifugal tube - k ₁ dimensionless constant - k ² dimensionless constant - r cm radial coordinate - r ₁ cm minimum radius of ultracentrifugal tube - r ₂ cm maximum radius of ultracentrifugal tube - r _m cm mean radius of ultracentrifugal tube - r _s cm radius from which sedimentation starts - s s sedimentation constant - t s time - z cm vertical coordinate - dimensionless parameter - ^m dimensionless parameter - deg inclination of ultracentrifugal tube - s^–1 angular velocity of rotation     

Purification and characterization of a Bacillus sp. SAM1606 thermostable α-glucosidase with transglucosylation activity

We purified a novel -glucosidase to homogeneity from an Escherichia coli recombinant transformed with the -glucosidase gene from thermophilic Bacillus sp. SAM1606. The enzyme existed as mono- and multimeric forms of a promoter protein with a relative molecular weight of 64,000 and isoelectric point of 4.6. We isolated a monomeric form of the enzyme and characterized it. The enzyme was unique among the known -glucosidases in both broad substrate specificity and high thermostability. The enzyme hydrolysed a variety of O--d-glucopyranosides such as nigerose, maltose, isomaltose, sucrose, and trehalose efficiently. The molecular activity (k _O) and the Michaelis constant (K _m) values at 55°C and pH 6.0 for sucrose were 54.6 s^–1 and 5.3 mm, respectively. The optimum pH and temperature for hydrolysis were pH 5.5 and 75°C, respectively. The enzyme exhibited a high transglucosylation activity: it reacted with 1.8 m sucrose at 60°C for 70 h to yield oligosaccharides containing theanderose in a maximum yield of 35% (w/w). High thermostability of the enzyme (stable up to 65°C at pH 7.2 for 10 min) permits the transglucosylation reaction at high temperatures, which would be beneficial for continuous production of oligosaccharides from sucrose.     

Properties of two conjugative plasmids mediating tetracycline resistance, raffinose catabolism and hydrogen sulfide production in Escherichia coli.

Summary The tetracycline resistance (Tc) and raffi nose-hydrogen sulfide (Raf-Hys) characters of Escherichia coli D1021 are located on two compatible, conjugative fi^– plasmids named pRSDI and pRSD2, respectively. These were transferred together or separately to the isogenic background of E. coli K12 and isolated as transconjugants. Plasmid molecules isolated as covalently closed circular DNA have been analysed by buoyant density centrifugation, sucrose gradient sedimentation and electron microscopy. pRSDI (Tc) showed a buoyant density of 1.716 g/cm³ (56% GC), the open circular (OC) form had a sedimentation coefficient of 37s. If grown without tetracycline prior to isolation the contour length of most pRSDI molecules was 14.6 (±0.1) m (30.3 × 106 daltons) with a minor species of 13.9 (± 0.1) m owing to a small deletion. Pronounced length variation of pRSDI by growth in the presence of tetracycline owing to gene amplification is subject of a subsequent paper. In contrast, pRSD2 (Raf-Hys) molecules are stable under all conditions tested. The buoyant density was 1.713 g/cm³ (53% GC), the sedimentation coefficient of OGDNA was 58s and the contour length was 40.2 ± 0.6 m (83 × 106 daltons). During exponential growth one copy of pRSD2 per chromosome was found indicating stringent control of plasmid replication. At the onset of stationary growth the copy number rose from one to four per host chromosome indicating relaxation of the replication control. The level of plasmid-coded -galactosidase increases with copy numbers and has been used to test the gene dosage.     

Modelling the effect of varying soil water on root growth dynamics of annual crops

We present a simple framework for modelling root growth and distribution with depth under varying soil water conditions. The framework considers the lateral growth of roots (proliferation) and the vertical extension of roots (root front velocity). The root front velocity is assumed to be constant when the roots descend into an initially wet soil profile. The lateral growth of roots is governed by two factors: (1) the current root mass or root length density at a given depth, and (2) soil water availability at that depth.Under non-limiting soil water conditions, the increase in root mass at any depth is governed by a logistic equation so that the root length density (R _v) cannot exceed the maximum value. The maximumR _v, is assumed to be the same for all depths. Additional dry matter partitioned to roots is initially distributed according to the current root mass at each depth. As the root mass approaches the maximum value, less dry matter is partitioned to that depth.When soil water is limiting, a water deficit factor is introduced to further modify the distribution of root dry matter. It is assumed that the plant is an energy minimiser so that more root mass is partitioned to the wetter regions of the soil where least energy will be expended for root growth. Hence, the model allows for enhanced root growth in areas where soil water is more easily available.Simulation results show that a variety of root distribution patterns can be reproduced due to varying soil water conditions. It has been demonstrated that broad patterns of root distribution reported in the literature can also be simulated by the model.     

Feeding and diel vertical migration cycles of Metridia gerlachei (Giesbrecht) in coastal waters of the Antarctic Peninsula

Diel vertical migration and feeding cycles of adult female Metridia gerlachei in the upper 290 m of a 335-m water column were measured during a total of 65 h in two periods of early summer (Dec 20–21 and Dec 25–26, 1991). Samples collected in eight depth strata by 35 MOCNESS tows (333-m mesh) were analyzed for abundance and mean individual gut pigment content. Most of the copepod population was concentrated in a 50-m depth interval at all times. Feeding began simultaneously with nocturnal ascent from a depth of 200–250 m at 18:00 h (local time), when the relative change in ambient light intensity was greatest. Ingestion rate increased exponentially (k_i = 0.988 h^–1) at double the gut evacuation rate (k_e = 0.488 h^–1) as the population moved upward at 22.3–26.5 m h^–1 through increasing concentrations of particulate chlorophyll-a. Although the bulk of the population did not move to depths shallower than 50 m, and began its downward migration at a rate of 20.8–31.7 mh^–1 in complete darkness, individual females continued to make brief excursions into chlorophyll-rich surface waters (4–8 g l^–1) during the first few hours of population descent. Ingestion rate diminished abruptly by one order of magnitude (k_i = 0.068 h^–1) at dawn ( 0330 h). Within four more hours, the population had reached its daytime depth and gut pigment content remained constant at a minimum value until the next migration cycle. No feeding appeared to take place at depth during the day. Ingestion by M. gerlachei females removed < 4% of daily primary production, with only 20% of this amount being removed from surface waters by active vertical transport.     

Ion transport across leech integument

The dorsal skin of the leech Hirudo medicinalis was used for electrophysiological measurements performed in Ussing chambers. The leech skin is a tight epithelium (transepithelial resistance = 10.5±0.5 k· cm^-2) with an initial short-circuit current of 29.0±2.9 A·cm^-2. Removal of Na⁺ from the apical bath medium reduced short-circuit current about 55%. Ouabain (50mol·l^-1) added to the basolateral solution, depressed the short-circuit current completely. The Na⁺ current saturated at a concentration of 90 mmol Na⁺·l^-1 in the apical solution (K _M=11.2±1.8 mmol·l^-1). Amiloride (100 mol·l^-1) on the apical side inhibited ca. 40% of the Na⁺ current and indicated the presence of Na⁺ channels. The dependence of Na⁺ current on the amiloride concentration followed Michaclis-Menten kinetics (K _i=2.9±0.4 mol·l^-1). The amiloride analogue benzamil had a higher affinity to the Na⁺ channel (K _i=0.7±0.2 mol·l^-1). Thus, Na⁺ channels in leech integument are less sensitive to amiloride than channels known from vertebrate epithelia. With 20 mmol Na⁺·l^-1 in the mucosal solution the tissue showed an optimum amiloride-inhibitable current, and the amiloride-sensitive current under this condition was 86.8±2.3% of total short-circuit current. Higher Na⁺ concentrations lead to a decrease in amiloride-blockade short-circuit current. Sitmulation of the tissue with cyclic adenosine monophosphate (100 mol·l^-1) and isobutylmethylxanthine (1 mmol·l^-1) nearly doubled short-circuit current and increased amiloride-sensitive Na⁺ currents by 50%. By current fluctuation analysis we estimated single Na⁺ channel current (2.7±0.9 pA) and Na⁺ channel density (3.6±0.6 channels·m^-2) under control conditions. After cyclic adenosine monophosphate stimulation Na⁺ channel density increased to 5.4±1.1 channels·m^-2, whereas single Na⁺ channel current showed no significant change (1.9±0.2 pA). These data present a detailed investigation of an invertebrate epithelial Na⁺ channel, and show the similarities and differences to vertebrate Na⁺ channels. Whereas the channel properties are different from the classical vertebrate Na⁺ channel, the regulation by cyclic adenosine monophosphate seems similar. Stimulation of Na⁺ uptake by cyclic adenosine monophosphate is mediated by an increasing number of Na⁺ channels.Abbreviations slope of the background noise component - ADH antidiuretic hormone - cAMP cyclic adenosine monophosphate - f frequency - f _c coner frequency of the Lorentzian noise component - Hepes N-hydroxyethylpiperazine-N-ethanesulphonic acid - BMX isobutyl-methylxanthine - i _Na single Na⁺ channel current - I _Na max, maximal inhibitable Na⁺ current - I _SC short circuit current - K _i half maximal blocker concentration - K _M Michaelis constandard error of the mean - S _(f) power density of the Lorentzian noise component - S ₀ plateau value of the Lorentzian noise component - TMA tetramethylammonium - Trizma TRIS-hydroxymethyl-amino-methane - V _max maximal reaction velocity - V _T transepithelial potential - K half maximal blocker concentration     

Distribution,production, and age structure of slimy sculpin in an Arctic lake

Synopsis Slimy sculpins (Cottus cognatus) were caught in the littoral region of Toolik Lake, an arctic lake. These sculpins grew slower and lived longer (71 mm at 8⁺ years) than more southerly populations. Sculpin distribution along the slope of the rocky littoral zone was greatest at the 3.5 m depth and coincided with the rock-mud interface. The hypothesis that this preferred area provided both increased prey and reduced predation was advanced. Yearly production estimate of littoral sculpins was 0.40 g · m^–2 · yr^–1 with a P/B ratio of 0.36. This is considerably less than estimates for more southerly populations of the same species.     

Characteristics of cladoceran and copepod communities in floodplain habitats of the Atchafalaya River Basin

In the summer of 1994, floodplain habitats of the Atchafalaya River Basin were surveyed for cladocera and copepoda. Collection sites were grouped into three distinct habitat types (black-water, brown-water and green-water) based on a principal components analysis of five hydrographic variables (current velocity, Secchi disk depth, surface percent saturation of dissolved oxygen, dissolved oxygen differential and surface water temperature). An ANOVA of four community indices (total abundance, Shannon–Weiner diversity (H'), richness, and evenness) was performed on both cladoceran and copepod communities among the three floodplain habitats. Common species were compared among habitats (² goodness-of-fit) to determine where they were most abundant. Green-water habitats had the greatest overall abundance of cladocerans and copepods (dominated by Diaphanosoma birgei, Moina micrura and Mesocyclops edax), but ranked lower in diversity and evenness than black-water and brown-water habitats where Ilyocryptus spinifer, Simocephalus serrulatus, Macrocyclops albidus (black-water) and Bosmina longirostris and Acanthocyclops vernalis (brown-water) were most abundant, respectively. These results indicate that the mosaic of floodplain habitats within large temperate river systems support unique zooplankton communities, and that these habitats are largely a function of seasonal hydrographic features.     

Oxygen transfer in a stirred loop fermentor with dilute polymer solutions

Oxygen transfer in a 0.35 m diameter stirred loop fermentor (a stirred tank with a concentric draft tube) has been studied with water containing a small amount of polymer(polyethylene oxide) as a drag-reducing additive.Power consumption was measured. It was found that the addition of polyethylene oxide causes an increase of power consumption. This is contrary to the results reported in the literature.Volumetric mass transfer coefficients (K _La) were measured. In water the introduction of the draft tube increased the K _La coefficient. The increase in K _La became larger with impeller speed. On the other hand, mass transfer in dilute polymer solutions decreased due to the presence of the draft tube. An empirical correlation has been proposed for the volumetric mass transfer coefficient in stirred loop fermentors. It has a general applicability.List of Symbols a 1/m specific surface area - C constant in Eq. (6) - g m/s² gravitational acceleration - K _L m/s overall liquid-phase mass transfer coefficient - n 1/s impeller speed - P W aerated power input by mechanical agitation - P _g W power input by sparged air - Q m³/min volumetric gas flow rate - U _sg m/s superficial gas velocity - V m³ liquid volume Greek Symbols exponents in Eq. (3) - exponent in Eq. (6) - kg/m³ density     

Hydraulic conductivities of competing root systems of Grevillea robustaand maize in agroforestry

Models of water uptake in mixed stands of vegetation commonly assume that water is partitioned among competing root systems in proportion to relative root length densities. Such an approach assumes implicitly that roots of different species have equivalent hydraulic properties. This was tested for root systems of Grevillea robustaA. Cunn. and maize (Zea maysL.) at a semi-arid site in Kenya. The hydraulic conductances for roots of both species were measured in situat the scale of the whole root or root system using a high pressure flow meter (HPFM). Hydraulic conductivities (_r) were expressed per unit root length. Root lengths were estimated for maize plants by soil coring and for G. robustausing a fractal branching model calibrated against soil coring. Mean _r was 1.88×10^–7 ±0.28×10^–7kg s^–1 MPa^–1 m^–1 for G. robustaand 1.25×10^–7 ±0.13×10^–7kg s^–1 MPa^–1 m^–1 for maize. Values of _r were not significantly different (P<0.05), suggesting that the assumption of hydraulic equivalence for root systems of the two species may be valid, at least when hydrostatic gradients are the major driving force for water uptake. Differences in conductivities between these species could arise, however, because of variation in the hydraulic properties of roots not accounted for here, for example because of root age, phenology or responses to the soil environment.     

The role of phytoplankton in determining the underwater light climate in Lake Constance

At all seasons, the underwater light field of meso-eutrophic large (480 km²) deep (mean: 100 m) Lake Constance was studied in conjunction with the assessments of vertical distributions of phytoplankton chlorophyll concentrations. Vertical profiles of scalar, downwelling and upwelling fluxes of photosynthetically available radiation, as well as fluxes of spectral irradiance between 400 and 700 nm wavelength were measured.The overall transparency of the water for PAR is highly dependent on chlorophyll concentration. However, the spectral composition of underwater light is narrowing with water depth regardless of phytoplankton biomass.Green light is transmitted best, even at extremely low chlorophyll concentrations. This is explained by the selective absorption of blue light by dissolved organic substances and red light by the water molecules. Nevertheless, significant correlations were found between vertical attenuation coefficients of downwelling spectral irradiance and chlorophyll concentrations at all wavelengths. The slopes of the regression lines were used as estimates of chlorophyll-specific spectral vertical light attenuation coefficients (K _c()).The proportions of total upwelling relative to total downwelling irradiance (reflectance) increased with water depth, even when phytoplankton were homogeneously distributed over the water column. Under such conditions, reflectance of monochromatic light remained constant. Lower reflectance of PAR in shallow water is explained by smaller bandwidths of upwelling relative to downwelling light near the water surface. In deeper water, by contrast, the spectra of both upwelling and downwelling irradiance are narrowed to the most penetrating components in the green spectral range. Reflectance of PAR was significantly correlated with chlorophyll concentration and varied from 1% and 1-% at low and high phytoplankton biomass, respectively. Over the spectrum, reflectance exhibited a maximum in the green range. Moreover, in deeper layers, a red maximum was observed which is attributed to natural fluorescence by phytoplankton chlorophyll.     

Intensity of microcarrier collisions in turbulent flow

A model is developed, allowing estimation of the share of inelastic interparticle collisions in total energy dissipation for stirred suspensions. The model is restricted to equal-sized, rigid, spherical particles of the same density as the surrounding Newtonian fluid. A number of simplifying assumptions had to be made in developing the model. According to the developed model, the share of collisions in energy dissipation is small.List of Symbols b parameter in velocity distribution function (Eq. (28)) - c _K factor in Kolmogoroff spectrum law (Eq. (20)) - D _t(r _p ) m²/s characteristic dispersivity at particle radius scale (Eq. (13)) - E(k, t) m³/s² energy spectrum as function of k and t (Eq. (16)) - E _K (k) m³/s² energy spectrum as function of k in Kolmogoroff-region (Eq. (20)) - E _p dimensionless mean kinetic energy of a colliding particle (Eq. (36)) - E _cp dimensionless kinetic energy exchange in a collision (Eq. (37)) - G(x, s) dimensionless energy spectrum as function of x and s (Eq. (16)) - G _B(x) dimensionless energy spectrum as function of x for boundary region (Eq. (29)) - G _K(x) dimensionless energy spectrum as function of x for Kolmogoroff-region (Eq. (21)) - g m/s² gravitational acceleration - I _cp dimensionless collision intensity per particle (Eq. (38)) - I _cv dimensionless volumetric collision intensity (Eq. (39)) - k l/m reciprocal of length scale of velocity fluctuations (Eq. (17)) - K dimensionless viscosity (Eq. (13)) - n(2) dimensionless particle collision rate (Eq. (12)) - n(r) l/s particle exchange rate as function of distance from observatory particle center (Eq. (7)) - r m vector describing position relative to observatory particle center (Eq. (2)) - r m scalar distance to observatory particle center (Eq. (3)) - r _pm particle radius (Eq. (1)) - s dimensionless time (Eq. (10)) - SC kg/ms³ Severity of collision (Eq. (1)) - t s time (Eq. (2)) - u(r, t) m/s velocity vector as function of position vector and time (Eq. (2)) - u(r, t) m/s magnitude of velocity vector as function of position vector and time (Eq. (3)) - u _r(r, t) m/s radial component of velocity vector as function of position vector and time (Eq. (3)) - u _r (r, t) m/s magnitude of radial component of velocity vector as function of position vector and time (Eq. (3)) - u (r, t) m/s latitudinal component of velocity vector as function of position vector and time (Eq. (3)) - u (r, t) m/s magnitude of latitudinal component of velocity vector as function of position vector and time (Eq. (3)) - u (r, t) m/s longitudinal component of velocity vector as function of position vector and time (Eq. (3)) - u (r, t) m/s magnitude of longitudinal component of velocity vector as function of position vector and time (Eq. (3)) - u _gsm/s superficial gas velocity - u(r) m/s root mean square velocity as function of distance from observatory particle center (Eq. (3)) - u_r(r) m/s root mean square radial velocity component as function of distance from observatory particle center (Eq. (4)) - u (r) m/s root mean square latitudinal velocity component as function of distance from observatory particle center (Eq. (4)) - u (r) m/s Root mean square longitudinal velocity component as function of distance from observatory particle center (Eq. (4)) - w(x) dimensionless root mean square velocity as function of dimensionless distance from observatory particle center (Eq. (11)) - V _pm³ particle volume (Eq. (36)) - w(2) dimensionless root mean square collision velocity (Eq. (34)) - w ^* parameter in boundary layer velocity equation (Eq. (24)) - x dimensionless distance to particle center (Eq. (9)) - x ^* value of x where G _Band G _K-curves touch (Eq. (32)) - x _K dimensionless micro-scale (Kolmogoroff-scale) of turbulence (Eq. (15)) - volumetric particle hold-up - m²/s³ energy dissipation per unit of mass - m²/s kinematic viscosity - kg/m³ density - (r) m³/s fluid-exchange rate as function of distance to observatory particle center - Latitudinal co-ordinate (Eq. (5)) - Longitudinal co-ordinate (Eq. (5))     

Vertical distribution of organic constituents in an Antarctic lake: Lake Fryxell

Vertical distribution of organic constituents, i.e. total organic carbon (TOC), hydrocarbons, fatty acids and hydroxy acids in water and sediment samples from Lake Fryxell (77° 35 S, 163° 15 E) of southern Victoria Land, Antarctica were studied to elucidate their features in relation to stratification of the lake waters and likely distribution of microorganisms. The TOC content of the surface water (5.0 m; just below the ice cover of 4.50 m thickness) was 1.4 mg l^–1. It increased markedly with depth and attained a maximum value of 21.7 mg C l^–1 at a depth of 17.5 m, but decreased to the bottom (13.3 mg C l^–1). The high TOC content of the anoxic bottom layers (> 15 m) is attributable to the concentration of refractory organic substances over long periods following the degradation of labile organic constituents. Hydrocarbons were not found in the water column, but the major constituent of the bottom sediment was n-C_{29 : 2} alkene. Total concentrations of fatty acids in the oxic layers ( 10 m) were highest at 10.0 m and much higher than those in the anoxic layers (> 10 m), probably reflecting the phytoplankton population. The content of branched (iso and anteiso) fatty acids and 3-hydroxy acids in the anoxic layers were much greater than those in the oxic layers which would seem to reflect the distribution of bacterial abundance. The differences of organic composition between the water column and sediments imply that sinking dead organisms were quickly degraded in the lake bottom. Also, the composition of microorganisms in the water column must be very different from that in the sediments.     

A global analysis of root distributions for terrestrial biomes

Understanding and predicting ecosystem functioning (e.g., carbon and water fluxes) and the role of soils in carbon storage requires an accurate assessment of plant rooting distributions. Here, in a comprehensive literature synthesis, we analyze rooting patterns for terrestrial biomes and compare distributions for various plant functional groups. We compiled a database of 250 root studies, subdividing suitable results into 11 biomes, and fitted the depth coefficient to the data for each biome (Gale and Grigal 1987). is a simple numerical index of rooting distribution based on the asymptotic equation Y=1-^d, where d = depth and Y = the proportion of roots from the surface to depth d. High values of correspond to a greater proportion of roots with depth. Tundra, boreal forest, and temperate grasslands showed the shallowest rooting profiles (=0.913, 0.943, and 0.943, respectively), with 80–90% of roots in the top 30 cm of soil; deserts and temperate coniferous forests showed the deepest profiles (=0.975 and 0.976, respectively) and had only 50% of their roots in the upper 30 cm. Standing root biomass varied by over an order of magnitude across biomes, from approximately 0.2 to 5 kg m^-2. Tropical evergreen forests had the highest root biomass (5 kg m^-2), but other forest biomes and sclerophyllous shrublands were of similar magnitude. Root biomass for croplands, deserts, tundra and grasslands was below 1.5 kg m^-2. Root/shoot (R/S) ratios were highest for tundra, grasslands, and cold deserts (ranging from 4 to 7); forest ecosystems and croplands had the lowest R/S ratios (approximately 0.1 to 0.5). Comparing data across biomes for plant functional groups, grasses had 44% of their roots in the top 10 cm of soil. (=0.952), while shrubs had only 21% in the same depth increment (=0.978). The rooting distribution of all temperate and tropical trees was =0.970 with 26% of roots in the top 10 cm and 60% in the top 30 cm. Overall, the globally averaged root distribution for all ecosystems was =0.966 (r ²=0.89) with approximately 30%, 50%, and 75% of roots in the top 10 cm, 20 cm, and 40 cm, respectively. We discuss the merits and possible shortcomings of our analysis in the context of root biomass and root functioning.     

Inversion of gravitropism by symmetric blue light on the clinostat

Gravitropic stimulation of maize (Zea mays L.) seedlings resulted in a continuous curvature of the coleoptiles in a direction opposing the vector of gravity when the seedlings were rotated on a horizontal clinostat. The orientation of this response, however, was reversed when the gravitropic stimulation was preceeded by symmetric preirradiation with blue light (12.7 mol photons·m^–2). The fluence-response curve of this blue light exhibited a lower threshold at 0.5 mol·m^–2, and could be separated into two parts: fluences exceeding 5 mol·m^–2 reversed the direction of the gravitropic response, whereas for a range between the threshold and 4 mol·m^–2 a split population was obtained. In all cases a very strong curvature resulted either in the direction of gravity or in the opposite orientation. A minor fraction of seedlings, however, curved towards the caryopsis. Furthermore, the capacity of blue light to reverse the direction of the gravitropic response disappeared with the duration of gravitropic stimulation and it depended on the delay time between both stimulations. Thistonic blue-light influence appears to be transient, which is in contrast to the stability observed fortropistic blue-light effects.This work was supported by the Deutsche Forschungsgemeinschaft.     

Feeding of Burbot, Lota lota, at Different Temperatures

Daily food intake of adult burbot, Lota lota, fed on vendace, Coregonus albula, were estimated experimentally at four different water temperatures (2.4, 5.1, 10.8 and 23.4°C). Mean daily food intake (MDI; g d^–1) and relative daily food intake (RDI; g g^–1 d^–1) increased with temperature from 2.4 to 10.8°C and decreased at 23.4°C. Temperatures of maximum daily food intake values were 13.6°C for MDI and 14.4°C for RDI. No correlation between food intake values and burbot weight was observed. RDI values were used to estimate annual food consumption of burbot population. Annual food consumption estimates were 9.7kg ha^–1 and 24.3kg ha^–1 when burbot biomass was 2.0 or 5.0kg ha^–1, respectively.     

Competition between sulfate-reducing and methanogenic bacteria for H2 under resting and growing conditions

The basis for the outcome of competition between sulfidogens and methanogens for H₂ was examined by comparing the kinetic parameters of representatives of each group separately and in co-culture. Michaelis-Menten parameters (V _max and K _m) for four methanogens and five sulfate-reducing bacteria were determined from H₂-depletion data. Further, Monod growth parameters (_max, K _s, Y _H2) for Desulfovibrio sp. G11 and Methanospirillum hungatei JF-1 were similarly estimated. H₂ K _m values for the methanogenic bacteria ranged from 2.5 M (Methanospirillum PM1) to 13 M for Methanosarcina barkeri MS; Methanospirillum hungatei JF-1 and Methanobacterium PM2 had intermediate H₂ K _m estimates of 5 M. Average H₂ K _m estimates for the five sulfidogens was 1.2 M. No consistent difference among the V _max estimates for the above sulfidogens (mean=100 nmol H₂ min^-1 mg^-1 protein) and methanogens (mean=110 nmol H₂ min^-1 mg^-1 protein) was found. A two-term Michaelis-Menten equation accurately predicted the apparent H₂ K _m values and the fate of H₂ by resting co-cultures of sulfate-reducers and methanogens. Half-saturation coefficients (K _s) for H₂-limited growth of Desulfovibrio sp. G11 (2–4 M) and Methanospirillum JF-1 (6–7 M) were comparable to H₂ K _m estimates obtained for these organisms. Maximum specific growth rates for Desulfovibrio sp. G11 (0.05 h^-1) were similar to those of Methanospirillum JF-1 (0.05–0.06 h^-1); whereas G11 had an average yield coefficient 4 x that of JF-1. Calculated _max and V _max/K _m values for the methanogens and sulfidogens studied predict that the latter bacterial group will process more H₂ whether these organisms are in a growing or resting state, when the H₂ concentration is in the first-order region.