Assessing and conserving groundwater biodiversity: synthesis and perspectives

1. This paper is a synthesis of a special issue on groundwater biodiversity with a focus on obligate subterranean species, the stygobionts. The series of papers constitutes a great leap forward in assessing and understanding biodiversity patterns because of the use of large quantitative data sets obtained over a broad geographic scale. They also represent a conceptual shift, away from a purely taxonomic and phylogenetic focus to the analysis of whole groundwater assemblages.
2. The general patterns emerging for groundwater fauna are: very high levels of endemism, low local diversity relative to regional diversity, a limited number of lineages, occurrence of many relicts, and truncated food webs with very few predators.
3. β-Diversity is at least as important as α-diversity in determining total richness at different scales (aquifer, basin and region) and overall taxa richness increases across spatial scales.
4. Advances in understanding groundwater biodiversity patterns further include identification of several important factors related to geology and hydrology that determine the composition of European stygobiotic assemblages.
5. Important challenges for future research include improving sampling strategies, filling gaps in sampling coverage, intensifying research on theoretical and statistical models, and including functional and genetic diversity components in biodiversity assessments.
6. Strategies are proposed for protecting groundwater biodiversity and an argument is made to integrate biodiversity in groundwater management. Applying principles such as complementarity and flexibility for groundwater biodiversity conservation is a major step toward delineating a reserve network that maximise species representation at the European scale.     

Stygobiotic crustacean species richness: a question of numbers,a matter of scale

Species richness in ground water is still largely underestimated, and this situation stems from two different impediments: the Linnaean (i.e. the taxonomic) and the Wallacean (i.e. the biogeographical) shortfalls. Within this fragmented frame of knowledge of subterranean biodiversity, this review was aimed at (i) assessing species richness in ground water at different spatial scales, and its contribution to overall freshwater species richness at the continental scale; (ii) analysing the contribution of historical and ecological determinants in shaping spatial patterns of stygobiotic species richness across multiple spatial scales; (iii) analysing the role of β-diversity in shaping patterns of species richness at each scale analysed. From data of the present study, a nested hierarchy of environmental factors appeared to determine stygobiotic species richness. At the broad European scale, historical factors were the major determinants in explaining species richness patterns in ground water. In particular, Quaternary glaciations have strongly affected stygobiotic species richness, leading to a marked latitudinal gradient across Europe, whereas little effects were observed in surface fresh water. Most surface-dwelling fauna is of recent origin, and colonized this realm by means of post-glacial dispersal. Historical factors seemed to have also operated at the smaller stygoregional and regional scales, where different karstic and porous aquifers showed different values of species richness. Species richness at the small, local scale was more difficult to be explained, because the analyses revealed that point-diversity in ground water was rather low, and at increasing values of regional species richness, reached a plateau. This observation supports the coarse-grained role of truncated food webs and oligotrophy, potentially reflected in competition for food resources among co-occurring species, in shaping groundwater species diversity at the local scale. Alpha-diversity resulted decoupled from γ-diversity, suggesting that β-diversity accounted for the highest values of total species richness at the spatial scales analysed.     

Classification of Springs in the Lake Baikal Region by Macroinvertebrate Communities

The macrozoobenthos communities in 15 cold fresh, 12 mineral (sodium chloride), and 19 thermal springs of the Baikal Rift Zone and adjacent areas have been investigated. The classification of springs on the basis of quantitative indicators of abundance was proposed. According to the dominant group of fauna, three types of communities were identified for the cold springs; six types, for mineral springs; and four types, for thermal springs. It was established that communities with the dominance of Chironomidae, Turbellaria, and Oligochaeta are formed in cold springs and communities with the predominance of Gastropoda (one or two species) prevail in thermal springs. It was noted that mineral springs of medium mineralization are characterized by communities with a prevalence of Amphipoda (Gammarus lacustris); those with high salinity are dominated by Brachyceran flies (Diptera, Brachycera).     

Evolution of termite functional diversity: analysis and synthesis of local ecological and regional influences on local species richness

Aim To (1) describe termite functional diversity patterns across five tropical regions using local species richness sampling of standardized areas of habitat; (2) assess the relative importance of environmental factors operating at different spatial and temporal scales in influencing variation in species representation within feeding groups and functional taxonomic groups across the tropics; (3) achieve a synthesis to explain the observed patterns of convergence and divergence in termite functional diversity that draws on termite ecological and biogeographical evidence to‐date, as well as the latest evidence for the evolutionary and distributional history of tropical rain forests. Location Pantropical. Methods A pantropical termite species richness data set was obtained through sampling of eighty‐seven standardized local termite diversity transects from twenty‐nine locations across five tropical regions. Local‐scale, intermediate‐scale and large‐scale environmental data were collected for each transect. Standardized termite assemblage and environmental data were analysed at the levels of whole assemblages and feeding groups (using components of variance analysis) and at the level of functional taxonomic groups (using correspondence analysis and canonical correspondence analysis). Results Overall species richness of local assemblages showed a greater component of variation attributable to local habitat disturbance level than to region. However, an analysis accounting for species richness across termite feeding groups indicated a much larger component of variation attributable to region. Mean local assemblage body size also showed the greater overall significance of region compared with habitat type in influencing variation. Ordination of functional taxonomic group data revealed a primary gradient of variation corresponding to rank order of species richness within sites and to mean local species richness within regions. The latter was in the order: Africa > south America > south‐east Asia > Madagascar > Australia. This primary gradient of species richness decrease can be explained by a decrease in species richness of less dispersive functional taxonomic groups feeding on more humified food substrates such as soil. Hence, the transects from more depauperate sites/regions were dominated by more dispersive functional taxonomic groups feeding on less humified food substrates such as dead wood. Direct gradient analysis indicated that ‘region’ and other large‐scale factors were the most important in explaining patterns of local termite functional diversity followed by intermediate‐scale geographical and site variables and, finally, local‐scale ecological variables. Synthesis and main conclusions Within regions, centres of termite functional diversity lie in lowland equatorial closed canopy tropical forests. Soil feeding termite evolution further down food substrate humification gradients is therefore more likely to have depended on the long‐term presence of this habitat. Known ecological and energetic constraints upon contemporary soil feeders lend support for this hypothesis. We propose further that the anomalous distribution of termite soil feeder species richness is partly explained by their generally very poor dispersal abilities across oceans. Evolution, radiation and dispersal of soil feeder diversity appears to have been largely restricted to what are now the African and south American regions. The inter‐regional differences in contemporary local patterns of termite species richness revealed by the global data set point to the possibility of large differences in consequent ecosystem processes in apparently similar habitats on different continents.     

Vicariance, dispersal and scale in the aquatic subterranean fauna of karst regions

1. The causes of distribution patterns of stygobionts (obligate subterranean-dwelling aquatic species) were examined with special emphasis on vicariance and dispersal.
2. Dispersal was investigated on the premise that if migration is important, then migration at small scales should predict patterns at larger scales. Data on the copepod fauna of epikarst in Slovenia were especially useful for the study of migration, because data on habitat occupancy could be collected at scales of individual drips located metres apart to the scale of individual caves to entire karst regions. Occupancy of drips in one cave was a remarkably good predictor of occupancy of caves in a region, although not of the overall range of a given species. These results were also supported by occupancy patterns of the general stygobiotic fauna of West Virginia caves, compared at different scales.
3. Vicariance was investigated by noting that proximity to marine embayments increases the likelihood of vicariant speciation. In the U.S.A., only the fauna of the Edwards Aquifer of Texas has a significant component of marine-derived species. Differences in shape of the relationship between species number and number of caves in a county indicated that the marine-derived component represented an addition to rather than a replacement of the other stygobiotic species.
4. Thus, we found evidence for the importance of both vicariance and dispersal. The techniques employed could be used to study these patterns more generally, as more data become available.     

Obligate groundwater fauna of France: diversity patterns and conservation implications

We examined taxonomic and geographic patterns of the obligate groundwater fauna (i.e. stygobiotic fauna) by assembling in a distributional data base all species occurrences reported from France since 1805. A simulated annealing algorithm was used to identify conservation targets. Until the 60s, biological surveys were restricted to caves but the proportion of sampling sites in unconsolidated sediments increased from 1 to 16% over the last 40 years. A total of 380 species and subspecies in 40 families were collected, 70% of which being restricted to France. As observed in other temperate regions, the stygobiotic fauna was dominated by crustaceans (65% of species) and molluscs (22%). The cumulative number of species did not level off over time, clearly showing that biodiversity was underestimated. Temporal trends in the cumulative number of obligate groundwater and surface water species suggested that groundwater comprised more crustaceans than surface freshwater. Endemism was high although the geographic range size of species increased as distributional data accumulated. Of 380 species, 156 were known from a single 400-km² cell, among which 73% were located in the southern third of France. The distribution map of species richness changed dramatically over time, indicating that the location of richness hotspots was sensitive to sampling effort. Less than 2% of the French landscape was needed to capture 60% of known species. Thus, a large proportion of species could be protected by focusing habitat conservation efforts on a few complementary species-rich aquifers located in distinct regions.     

Patterns of species richness for vascular plants in China's nature reserves

Explaining the heterogeneous distribution of biodiversity across the Earth has long been a challenge to ecologists and biogeographers. Here, we document the patterns of plant species richness for different taxonomic groups in China's nature reserves, and discuss their possible explanations at national and regional scales, using vascular plant richness data coupled with information on climate and topographical variables. We found that water deficit, energy and elevation range (a surrogate of habitat heterogeneity) represent the primary explanations for variation in plant species richness of the nature reserves across China. There are consistent relationships between species richness and climate and habitat heterogeneity for different taxonomic vascular plant groups at the national scale. Habitat heterogeneity is strongly associated with plant richness in all regions, whereas climatic constraints to plant diversity vary regionally. In the regions where energy is abundant or water is scarce, plant richness patterns were determined by water and habitat heterogeneity, whereas in the region with low energy inputs, water interacting with energy, and habitat heterogeneity determined its species richness pattern. Our results also suggest that energy variables alone do not represent the primary predictor of plant richness.     

Detecting flying insects using car nets and DNA metabarcoding

Monitoring insects across space and time is challenging, due to their vast taxonomic and functional diversity. This study demonstrates how nets mounted on rooftops of cars (car nets) and DNA metabarcoding can be applied to sample flying insect richness and diversity across large spatial scales within a limited time period. During June 2018, 365 car net samples were collected by 151 volunteers during two daily time intervals on 218 routes in Denmark. Insect bulk samples were processed with a DNA metabarcoding protocol to estimate taxonomic composition, and the results were compared to known flying insect richness and occurrence data. Insect and hoverfly richness and diversity were assessed across biogeographic regions and dominant land cover types. We detected 15 out of 19 flying insect orders present in Denmark, with high proportions of especially Diptera compared to Danish estimates, and lower insect richness and diversity in urbanized areas. We detected 319 species not known for Denmark and 174 species assessed in the Danish Red List. Our results indicate that the methodology can assess the flying insect fauna at large spatial scales to a wide extent, but may be, like other methods, biased towards certain insect orders.     

Effects of historical and contemporary factors on global patterns in avian species richness

Aim  The aim of this study was to determine how regional and historical factors influence global patterns in avian species richness.
Location  Global.
Methods  Using a comprehensive data set including 710 World Wildlife Fund terrestrial ecoregions covering nearly all the land surface of the Earth, avian species richness was compared among six biogeographical regions after accounting for sample area, elevational range and climate. Analysis of variance and multiple regressions were used. Spatial autocorrelation in model residuals was accounted for.
Results  Significant effects of region on avian species richness were found in nearly all comparisons between biogeographical regions.
Main conclusions  Regional and historical processes have played a role in regulating large-scale avian species richness patterns across the globe. Avian species richness in different regions of the world cannot be accurately predicted by a single global model. Avian species richness in areas of similar environments may differ substantially between regions, and thus avian species richness in one biogeographical region cannot be predicted using the richness–environment relationship derived from the data of another biogeographical region, even one with similar environments.     

Quantifying spatial and temporal variability of macroinvertebrate metrics

Since the introductions of the Habitat Directive and the European Water Framework Directive, water authorities are now obliged to monitor changes in conservation value/ecological quality on larger spatial scales (opposed to site scale), as well as to indicate the level of confidence and precision of the results provided by the monitoring programs in their river basin management plans (European Commission, 2000). To meet these requirements, analyses of the statistical power of the monitoring programs should be implemented. Currently, the statistical properties associated with aquatic monitoring programs are often unknown. We collected macroinvertebrate samples from 25 meso-eutrophic drainage ditches in the Netherlands and selected 7 taxonomic richness metrics for the evaluation of spatial and temporal variability. Simulations were performed to investigate the effects of changes in (1) the total number of species included in a taxonomic richness metric and (2) the relative number of rare species included in a taxonomic richness metric. Of the 7 metrics evaluated, the number of common species required the smallest number of monitoring sites, followed by the number of Gastropoda species, and the number of species. Also, results showed that metric variability will decrease when the proportion of rare species included in a taxonomic richness metric is reduced or the total number of species included is increased. Irrespective of the metric applied a large effort will be required to detect change within drainage ditches in the Wieden, due to high spatial variability. Therefore, we need to explore the possibilities of applying alternative more cost-effective methods for sampling and sample processing in biomonitoring programs.     

How wide to cast the net? Cross‐taxon congruence of species richness,community similarity and indicator taxa in ponds

1. Broad‐scale assessments of biodiversity often rely on the use of surrogate taxa, whose reliability has rarely been tested, particularly in freshwater systems. Here we use data from 46 ponds in two regions of the U.K. to explore the performance of macroinvertebrate taxa as surrogates for the rapid assessment of pond biodiversity. For the four dominant taxonomic groups in these ponds (Chironomidae, Coleoptera, Gastropoda and Trichoptera) we explore cross‐taxon species richness relationships in each of the two regions, and also determine the degree of concordance between the different taxa in accurately representing the similarity relationships between pond assemblages. 2. Patterns of cross‐taxon congruence in species richness were highly variable among taxa and study sites, making the use of a single taxon as a predictor of overall macroinvertebrate species richness problematic. In contrast, all four taxa show >70% congruence with the pattern of community similarity between sites resulting from the entire macroinvertebrate dataset, this result being consistent within and between regions. Canonical correspondence analysis demonstrated that all taxa were related in a similar manner to measured environmental parameters, meaning that limited additional ecological information is gained by including a wider range of pond taxa in rapid site assessment. 3. Single taxonomic groups can, therefore, perform consistently as indicators of community similarity between ponds, and no one taxon dramatically outperforms any other in this respect. The relative merits of the four focal taxa as surrogates for pond invertebrate assemblage composition are discussed with reference to ease of survey, ease of identification and ecological range occupied. 4. It is suggested that Coleoptera have a number of advantages as a surrogate taxon, being diverse, easily sampled, readily identified, taxonomically stable, ecologically well understood and occurring across a wide spectrum of pond types. They are therefore recommended for use as a focal group in rapid pond biodiversity assessments, employing an approach such as ours, which examines patterns of assemblage similarity, rather than species richness alone.     

Patterns of species richness for blackflies (Diptera: Simuliidae) in the Nearctic and Neotropical regions

Abstract.  1. Patterns of simuliid species richness were examined over a variety of scales at 532 stream sites in the Nearctic (394) and Neotropical (138) regions. In Nearctic streams, species richness of immature blackflies both within and across ecoregions and over two seasons was examined. Stream variables at each site included seston, width, depth, velocity, discharge, conductivity, pH, dissolved oxygen, water temperature, dominant streambed-particle size, canopy cover, and riparian vegetation. These variables were subjected to a principal component analysis and derived principal components were related back to richness, using regression analysis. At the level of the stream reach, richness was not highly correlated with single-point measurements of stream conditions.
2. Using data from both Nearctic and Neotropical sites, the effect of regional richness on local richness was examined. As regional richness increased, local diversity reached an asymptote in which further increases in regional richness were not matched by increases in local richness. Hence, simuliid communities are best described as saturated (type II) communities, consistent with the current view of lotic communities as non-equilibrium systems.
3. The well-established pattern of greater species richness in tropical regions was not observed in this study. To the contrary, blackfly richness is higher in temperate streams than in tropical streams at both local and regional scales.     

Local and regional determinants of stream fish assemblage structure: inferences based on taxonomic vs. functional groups

Aim  To examine the roles of local and regional environmental variables and biotic interactions in determining the structure of local stream fish assemblages, and to compare results derived from analyses based on taxonomic and functional groups.
Location  Texas, USA.
Methods  Species abundance data were compiled for 157 stream fish assemblages in several river basins across Texas. Species were condensed into functional groups based on trophic and life-history characteristics. Local and regional environmental variables were either measured at each location or determined from scale maps and public-access data bases. The original taxonomic and functional group data sets were analysed using similarity indices, null models of co-occurrence, and direct and indirect ordination techniques. Results derived from taxonomic and functional group data sets are compared.
Results  Inferences regarding the relative roles of local and larger-scale factors in determining stream fish assemblage structure differ dramatically between analyses of taxonomic and functional groups. Taxonomic analyses suggest a prominent role of regional-scale environmental factors, and local assemblages sorted according to a biogeographic pattern. Functional group analyses suggest almost equal roles of factors representative of local and larger scales, and assemblages were distinguished by a habitat template irrespective of geographic region.
Main conclusions  The structure of local stream fish assemblages is determined ultimately by factors representing multiple scales, with the relative importance of each depending on the biological unit employed (species or functional groups). We suggest that analyses using functional groups can more directly infer ecological responses to environmental variation, and therefore may provide a more fruitful avenue for developing and testing ecological theory of community organization across biogeographic scales.     

Monitoring marine macroalgae: the influence of spatial scale on the usefulness of biodiversity surrogates

Aim To examine the influence of spatial scale on the usefulness of commonly employed biodiversity surrogates in subtidal macroalgae assemblages. Location South‐west Australia. Methods The relationship between biodiversity surrogates and univariate and multivariate species‐level patterns was tested at multiple spatial scales, ranging from metres (between quadrats) to hundreds of kilometres (between regions), using samples collected from almost 2000 km of temperate coastline that represented almost 300 species. Biodiversity surrogates included commonly used cost‐effective alternatives to species‐level sampling, such as those derived from functional groups and from taxonomic aggregation. Results Overall, surrogates derived from taxonomic aggregation to genus or family level correlated strongly with species‐level patterns, although the family‐level surrogate was a less effective predictor of species richness at large spatial scales. Surrogates derived from aggregation to coarser taxonomic levels and functional groups performed poorly, while the effectiveness of a surrogate measure derived from canopy‐forming species improved with increasing spatial scale. Main conclusions A critical, but rarely examined, assumption of biodiversity surrogates is that the relationship between surrogate and species‐level patterns is consistent in both space and time, and across a range of spatial and temporal scales. As the performance of all surrogates was, to some degree, scale‐dependent, this work empirically demonstrated the need to consider the spatial extent and design of any biodiversity monitoring programme when choosing cost‐effective alternatives to species‐level data collection.     

Amphipoda and Isopoda diversity around Tunisian wetlands (North Africa) in relation to environmental conditions

Amphipoda and Isopoda were sampled in 40 Tunisian wetlands, and their fauna were compared at four different types: lagoon, sebkhas, dams and hill reservoir. At each station, eight quadrates of 50 × 50 cm were randomly placed. Amphipoda and Isopoda were collected by hand. They were identified to species level. At each station, analyses of organic matter, sodium, calcium and heavy metals content from the soil collected in each station were performed. We recorded 19 and eight species for respectively Isopoda and Amphipoda and caught 3,035 specimens in total. The highest isopod's species richness (11 species) was noted around hill reservoirs and dams, a quite similar richness in the banks of lagoons (10 species) but only six species in the sebkhas. Eight amphipod species were recorded in the supralittoral zone of lagoons, three species around sebkhas but no amphipods were found in samples from dams and hill reservoirs. Isopod species richness was positively correlated with soil humidity. However, the distribution of the species Orchestia mediterranea, Orchestia gammarellus, Orchestia montagui, Orchestia stephenseni and Platorchestia platensis was related to soil metal concentrations.     

非环境类因子对物种数目协同变化的影响

不同分类类群的物种数目常在空间上表现出显著相关地协同变化,但哪些相关系数之间存在较大的差异？究竟是什么因素导致了这种差异是值得关注的问题。从不同作者的研究方法和数据来源来看,不同研究中的研究方法、研究区域和环境条件本身就存在着差异。除以上影响因子外,我们分析了非环境类因子对物种数目协同变化的影响。结果发现分类类群间的物种数量协同变化差异明显,只有起源和生境要求相似的类群间呈显著性相关;不同鸟兽间的协同变化不存在面积效应,但是空间尺度间的相关性差异明显：物种分布型中东洋型物种的协同变化明显,而广布型和古北型不明显;在鸟类居留型中繁殖鸟与兽类的协同变化极为显著,而其他类型则不显著。综上所述,物种数量协同变化的非环境类影响因子中,生态类型和起源对分类类群间的物种数目协同关系有重要影响,     

Seasonal variation in the abundance, biomass and biodiversity of earthworms in soils contaminated with metal emissions from a primary smelting works

1. Earthworms (Annelida: Oligochaeta) were sampled on four occasions (spring, summer, autumn and winter) at 14 sites along two transects from a primary lead/ zinc/cadmium smelting works at Avonmouth, UK.
2. Total abundance and biomass of earthworms decreased with proximity to the smelter. No worms were collected from the two sites closest to the factory (<0·6 km) and catches were significantly lower than controls at a further five sites (<3 km).
3. Seasonal composition of sampled communities differed only for summer with lower numbers of individuals and species collected at all sites. Reduced catches in the summer sample is a response to drought.
4. Species richness was lowest at sites close to the factory. For example, worms such as Aporrectodea caliginosa (Savigny) and Allolobophora chlorotica (Savigny) that were dominant at relatively clean sites further from the smelter are absent from the most contaminated soils.
5. Reduced species richness resulted in lower Shannon–Weiner diversity and higher Berger–Parker dominance. Multivariate cluster analysis for spring, summer and winter indicated that sites could be split into three groups based upon relative species composition. In autumn, two clusters were identified.
6. The absence of sensitive species from sites close to the smelting works supports the inclusion of earthworms as a key group in a terrestrial prediction and classification scheme for quantifying the effects of pollutants on soil biodiversity. However, sampling should be carried out in spring or autumn to obtain an accurate picture of community structure.     

Elevational patterns and hierarchical determinants of biodiversity across microbial taxonomic scales

Microbial biogeography is gaining increasing attention due to recent molecular methodological advance. However, the diversity patterns and their environmental determinants across taxonomic scales are still poorly studied. By sampling along an extensive elevational gradient in subarctic ponds of Finland and Norway, we examined the diversity patterns of aquatic bacteria and fungi from whole community to individual taxa across taxonomic coverage and taxonomic resolutions. We further quantified cross‐phylum congruence in multiple biodiversity metrics and evaluated the relative importance of climate, catchment and local pond variables as the hierarchical drivers of biodiversity across taxonomic scales. Bacterial community showed significantly decreasing elevational patterns in species richness and evenness, and U‐shaped patterns in local contribution to beta diversity (LCBD). Conversely, no significant species richness and evenness patterns were found for fungal community. Elevational patterns in species richness and LCBD, but not in evenness, were congruent across bacterial phyla. When narrowing down the taxonomic scope towards higher resolutions, bacterial diversity showed weaker and more complex elevational patterns. Taxonomic downscaling also indicated a notable change in the relative importance of biodiversity determinants with stronger local environmental filtering, but decreased importance of climatic variables. This suggested that niche conservatism of temperature preference was phylogenetically deeper than that of water chemistry variables. Our results provide novel perspectives for microbial biogeography and highlight the importance of taxonomic scale dependency and hierarchical drivers when modelling biodiversity and species distribution responses to future climatic scenarios.     

Does freshwater macroinvertebrate diversity along a pH‐gradient reflect adaptation to low pH?

1. The impacts of anthropogenic surface water acidification are much better known than those of natural acidity. Recent studies have indicated biodiversity is not degraded and species composition unaltered in naturally acidic compared to circumneutral watercourses.
2. Here, we use a geographically extensive dataset comprising sites in more than 200 Swedish streams to test whether the lack of effects on macroinvertebrate species diversity is due to exaptation and adaptation to natural acidity.
3. To this end, we modelled pH associated with spring flood episodes, which inflict the most challenging hydrochemical conditions to the biota. We compared taxonomic richness and species composition along the modelled pH gradient in northern Sweden, where acidity is largely natural, with southern Sweden, a region influenced by significant anthropogenic acidification.
4. We found Plecoptera richness did not respond to varying pH either in northern or southern Sweden. Ephemeroptera richness was sensitive to pH in both regions, while that of Trichoptera increased with increasing pH in southern Sweden, but decreased in the north. The taxonomic composition of Plecoptera changed along the pH gradient in both regions, whereas that of Ephemeroptera and Trichoptera changed more strongly with pH in southern Sweden.
5. Our results support the hypothesis that stream invertebrates are able to tolerate low pH through exaptation or adaptation, but that this capability varies among taxonomic groups.     

New York's nature: a review of the status and trends in species richness across the metropolitan region

Aim The world's population is urbanizing, yet relatively little is known about the ecology of urban areas. As the largest metropolitan area in the USA, New York City is an ideal location to study the effects of urbanization. Here, we aim to produce a better understanding of the state of the research for species richness of flora and fauna across the New York metropolitan region. Location New York metropolitan region, USA. Methods We conducted a review of the published and grey literature, in which we targeted studies of species richness, and categorized each study by habitat, location and taxonomic group. Results We found 79 studies reporting location‐specific species richness data, resulting in 261 location‐taxonomic group records. Of these, 26 records had data from multiple time periods; 17 showed decreases in species richness, six reported increases and three showed stable species richness. Of these 26 records, most declines were attributed to anthropogenic causes, such as habitat loss/degradation and invasive species, while most increases reflected recovery from major habitat loss or increases in exotic species. Overall, most records (84) were terrestrial, followed by those in freshwater (72) and mixed habitats (61). When parsed by taxonomic group, the most commonly studied groups were plants (76) and mammals (48). Main conclusions In general, we discovered fewer studies than expected reporting species richness, especially studies reporting species richness for more than one point in time. Most studies that did contain data over time reported declines in species richness, while several studies reporting increasing or stable species richness reflected increases in exotic species. This survey provides a crucial first step in establishing baseline ecological knowledge for the New York metropolitan region that should help prioritize areas for protection, research and development. Furthermore, this research provides insights into the impacts of urbanization across the USA and beyond and should help establish similar frameworks for ecological understanding for other metropolitan regions throughout the world.