X-ray absorption and phase contrast imaging to study the interplay between plant roots and soil structure

Plant performance is, at least partly, linked to the location of roots with respect to soil structure features and the micro-environment surrounding roots. Measurements of root distributions from intact samples, using optical microscopy and field tracings have been partially successful but are imprecise and labour-intensive. Theoretically, X-ray computed micro-tomography represents an ideal solution for non-invasive imaging of plant roots and soil structure. However, before it becomes fast enough and affordable or easily accessible, there is still a need for a diagnostic tool to investigate root/soil interplay. Here, a method for detection of undisturbed plant roots and their immediate physical environment is presented. X-ray absorption and phase contrast imaging are combined to produce projection images of soil sections from which root distributions and soil structure can be analyzed. The clarity of roots on the X-ray film is sufficient to allow manual tracing on an acetate sheet fixed over the film. In its current version, the method suffers limitations mainly related to (i) the degree of subjectivity associated with manual tracing and (ii) the difficulty of separating live and dead roots. The method represents a simple and relatively inexpensive way to detect and quantify roots from intact samples and has scope for further improvements. In this paper, the main steps of the method, sampling, image acquisition and image processing are documented. The potential use of the method in an agronomic perspective is illustrated using surface and sub-surface soil samples from a controlled wheat trial. Quantitative characterization of root attributes, e.g. radius, length density, branching intensity and the complex interplay between roots and soil structure, is presented and discussed. This revised version was published online in June 2006 with corrections to the Cover Date.     

Regulation and function of root exudates

Root-secreted chemicals mediate multi-partite interactions in the rhizosphere, where plant roots continually respond to and alter their immediate environment. Increasing evidence suggests that root exudates initiate and modulate dialogue between roots and soil microbes. For example, root exudates serve as signals that initiate symbiosis with rhizobia and mycorrhizal fungi. In addition, root exudates maintain and support a highly specific diversity of microbes in the rhizosphere of a given particular plant species, thus suggesting a close evolutionary link. In this review, we focus mainly on compiling the information available on the regulation and mechanisms of root exudation processes, and provide some ideas related to the evolutionary role of root exudates in shaping soil microbial communities.     

A method to separate plant roots from soil and analyze root surface area

Analysis of the effects of soil management practices on crop production requires knowledge of these effects on plant roots. Much time is required to wash plant roots from soil and separate the living plant roots from organic debris and previous years’ roots. We developed a root washer that can accommodate relatively large soil samples for washing. The root washer has a rotary design and will accommodate up to 24 samples (100 mm diam. by 240 mm long) at one time. We used a flat-bed scanner to digitize an image of the roots from each sample and used a grid system with commercially-available image analysis software to analyze each sample for root surface area. Sensitivity analysis and subsequent comparisons of ‘dirty’ samples containing the roots and all the organic debris contained in the sample and ‘clean’ samples where the organic debris was manually removed from each sample showed that up to 15% of the projected image could be coveredwith debris without affecting accuracy and precision of root surface area measurements. Samples containing a large amount of debris may need to be partitioned into more than one scanning tray to allow accurate measurements of the root surface area. Sample processing time was reduced from 20 h, when hand separation of roots from debris was used, to about 0.5 h, when analyzing the image from an uncleaned sample. The method minimizes the need for preprocessing steps such as dying the roots to get better image contrast for image analysis. Some information, such as root length, root diameter classes and root weights, is not obtained when using this technique. Root length measurements, if needed, could be made by hand on the digital images. Root weight measurement would require sample cleaning and the advantage of less processing time per sample with this method would be lost. The significance of the tradeoff between information not obtained using this technique and the ability to process a greater number of samples with the time and personnel resources available must be determined by the individual researcher and research objectives.     

The dynamics of root meristem distribution in the soil

Plants must develop efficient root architectures to secure access to nutrients and water in soil. This is achieved during plant development through a series of expansion and branching processes, mostly in the proximity of root apical meristems, where the plant senses the environment and explores immediate regions of the soil. We have developed a new approach to study the dynamics of root meristem distribution in soil, using the relationship between the increase in root length density and the root meristem density. Initiated at the seed, the location of root meristems in barley seedlings was shown to propagate, wave‐like, through the soil, leaving behind a permanent network of roots for the plant to acquire water and nutrients. Data from observations on barley roots were used to construct mathematical models to describe the density of root meristems in space. These models suggested that the morphology of the waves of meristems was a function of specific root developmental processes. The waves of meristems observed in root systems of barley seedlings exploring the soil might represent a more general and fundamental aspect of plant rooting strategies for securing soil resources.     

Root decisions

Root systems have recognizable developmental plans when grown in solution or agar; however, these plans often must be modified to cope with the prevailing conditions in the soil environment such as the avoidance of obstacles and the exploitation of nutrient-rich patches or water zones. The modular structure of roots enables them to respond to their environment, and roots are very adaptive at modifying growth throughout the root system to concentrate their efforts in the areas that are the most profitable. Roots also form associations with microorganisms as a strategy to enhance resource capture. However, while the responses of roots in nutrient patches are well-recognized, overall 'rules of response' and variation in strategy among plant species that can be applied in a number of different environments are still lacking. Finally, there is increasing evidence that root–root interactions are much more sophisticated than previously thought, and the evidence for roots to identify self from non-self roots will be briefly discussed.     

隔沟交替灌溉条件下玉米根系形态性状及结构分布

为揭示根系对土壤环境的适应机制,研究了隔沟交替灌溉条件下玉米根系形态性状及结构分布。以垄位和坡位的玉米根系为研究对象,利用Minirhizotrons法研究了根系（活/死根）的长度、直径、体积、表面积、根尖数和径级变化及其与土壤水分、土温和水分利用效率（WUE）的相关关系。结果表明,对于活根,在坡位非灌水区域复水后根系平均直径减小,而根系日均生长速率、单位面积土壤根系体积密度、根尖数和表面积均增大,并随灌水区域土壤水分的消退逐渐减小;对于死根,在坡位非灌水区域复水后根系日均死亡速率、根系体积密度、根尖数和表面积变化均减小,其中根系死亡速率和死根直径随土壤水分的消退逐渐降低,而死根体积密度、根尖数和表面积分布随土壤水分降低呈增大趋势;在垄位,根系形态分布趋势与坡位一致,除根系直径与与坡位比较接近外,其他根系形态值均小于坡位。将根系分成4个径级区间分析根系的形态特征,结果表明在根系长度和体积密度分布中以2.5－4.5 mm径级的根系所占比例最大,在根尖数和根系表面积分布中以0.0－2.5 mm径级的根系为主。通过显著性相关分析,死根直径、体积密度、活根表面积等根系形态与土壤含水率、土壤温度和WUE间均存在显著或极显著的正相关关系,部分根系形态指标（如根系的生长速率、活根体积密度）只与坡位土壤含水量、土壤温度具有明显的相关性,表明隔沟交替灌溉对坡位根系形态的调控作用比垄位显著。     

Effects of short-term nitrogen addition on fine root biomass,lifespan and morphology of Castanopsis platyacantha in a subtropical secondary evergreen broad-leaved forest

Aims Fine roots are the principal parts for plant nutrients acquisition and play an important role in the underground ecosystem. Increased nitrogen (N) deposition has changed the soil environment and thus has a potential influence on fine roots. The purpose of this study is to reveal the effect of N deposition on biomass, lifespan and morphology of fine root.Methods A field N addition experiment was conducted in a secondary broad-leaved forest in subtropical China from May 2013 to September 2015. Three levels of N treatments: CK (no N added), LN (5 g·m^-2·a^-1), and HN (15 g·m^-2·a^-1) were applied monthly. Responses of fine root biomass, lifespan, and morphology of Castanopsis platyacantha to N addition were analyzed by using a minirhizotron image system from April 2014 to September 2015. Surface soil sample (0-10 cm) was collected in November 2014 and soil pH value, and concentrations of NH₄⁺-N and NO₃^--N were measured.Important findings The biomass and average lifespan of the fine roots of C. platyacantha were 128.30 g·m^-3 and 113-186 days, respectively, in 0-45 cm soil layer. Nitrogen addition had no significant effect on either fine root biomass or lifespan in 0-45 cm soil layer. However, LN treatment significantly decreased C. platyacantha root superficial area in 0-15 cm soil layer. HN treatment significantly decreased soil pH value. Our study indicated that short-term N addition influences soil inorganic N concentration and thus decreased pH value in surface soil, and thereafter affect fine root morphology. Short-term N addition, however, did not affect the fine root biomass, lifespan and morphology in subsoil.     

亚热带典型树种根毛特征及其与共生真菌的关系

根毛和共生真菌增加了吸收面积,提高了植物获取磷等土壤资源的能力。由于野外原位观测根表微观结构较为困难,吸收细根、根毛、共生真菌如何相互作用并适应土壤资源供应,缺乏相应的数据和理论。该研究以受磷限制的亚热带森林为对象,选取了21种典型树种,定量了根毛存在情况、属性变异,分析了根毛形态特征与共生真菌侵染率、吸收细根功能属性之间的关系,探讨了根表结构对低磷土壤的响应和适应格局。结果表明:1)在亚热带森林根毛不是普遍存在的, 21个树种中仅发现7个树种存有根毛, 4个为丛枝菌根(AM)树种, 3个为外生菌根(ECM)树种。其中,马尾松(Pinus massoniana)根毛出现率最高,为86%;2)菌根类型是理解根-根毛-共生真菌关系的关键,AM树种根毛密度与共生真菌侵染率正相关,但ECM树种根毛直径与共生真菌侵染率负相关; 3) AM树种根毛长度和根毛直径、ECM树种根毛出现率与土壤有效磷含量呈负相关关系。该研究揭示了不同菌根类型树种根毛-共生真菌-根属性的格局及相互作用,为精细理解养分获取策略奠定了基础。     

施用氮肥对落叶松人工林一级根外生菌根侵染及形态的影响

以落叶松人工林为研究对象,通过施N肥试验,对不同季节、不同土壤深度根系进行取样,研究了1级根外生菌根真菌侵染率和形态,及其与不同季节、土壤深度和土壤N有效性的关系.结果表明:外生菌根真菌对落叶松人工林1级根的侵染率显著受不同季节和土壤深度土壤N有效性的影响.在不同季节和土层之间,施N肥导致菌根真菌侵染率下降.与未侵染菌根真菌相比,菌根真菌侵染导致1级根形态发生明显改变,平均直径增加18.7%,平均根长缩短23.7%,比根长降低16.3%.这种根系形态变化在不同季节、不同土壤深度处理中表现明显.菌根真菌侵染改变了1级根形态,影响根系的生理生态过程.