麦类作物体细胞基因组原位杂交(GISH)效果影响因素的分析

以八倍体小滨麦、八倍体小黑麦、八倍体小偃麦、小麦-中间偃麦草双体异附加系为实验材料对影响麦类作物体细胞GISH技术实验效果的因素进行分析,研究结果表明:细胞分裂相多、染色体分散良好、无杂质影响的高质量的染色体制片是取得理想实验效果的基础;探针DNA浓度与封阻DNA浓度的比例及杂交后洗脱条件的控制是取得理想实验效果的关键。此外,还对麦类作物体细胞基因组原位杂交实验中出现的染色体丢失、外源染色体无杂交信号、杂交信号的强弱、杂交信号过多(杂交背景重)或过少、噪音信号及杂交污点产生的原因进行了分析,并提出了相应的解决方法或注意事项。     

八倍体小偃麦染色体组分析

本文对普通小麦与长穗偃麦草(Elytrigia elongata=Agropyron elongatum.2n=70)杂交选育出来的5个八倍体小偃麦的染色体组进行了研究。通过八倍体小偃麦与普通小麦杂交,八倍体小偃麦相互间杂交,观察了杂种F_1花粉母细胞减数分裂行为。根据观察结果,讨论了长穗偃麦草染色体组的构成,认为长穗偃麦草的染色体组为E_1E_2F_2F_2N较为合适。在此基础上,确定了5个八倍体小偃麦的染色体组:7430为ABDE_1,68为ABDF_1,693为ABDF_1,7631为ABDF_2,784为ABDN。另外,还讨论了八倍体小偃麦染色组的重组问题。     

小麦品种小偃6号染色体结构变异的细胞学研究

本文报道了小麦品种小偃6号的染色体结构变异。小偃6号及其亲缘品种与中国春小麦杂交,杂种F_1染色体配对资料表明:小偃6号及其父本小偃96与中国春在染色体结构上有很大差异。八倍体小偃麦小偃693与小偃6号和小偃96杂种F_1减数分裂中期出现19″+2′′′+5′的染色体构型,说明小偃6号和小偃96至少含有两个长穗偃麦草染色体片段。将小偃6号与中国春双端体系列杂交,杂种F_1中1AL、2AS、5AS、6AS和7BS端着丝点染色体配对频率极显著地低于(中国春×小偃6号)F_1的平均染色体臂配对频率(90.1％),从而将小偃6号中的异源片段局限于这5个染色体臂内;同时发现:1AL、2DS、4DS、6AL及3B(t″s+t′L)端体中的端着丝点染色体参与了杂种F_1中多价体的形成,或与此有关,故认为小偃6号与中国春至少有两个相互易位的差异,涉及到染色体1A、2D、3B、4D和6A。文章还对小偃6号异源易位的起源和鉴定等进行了讨论。     

小麦与彭梯卡偃麦草杂种及其衍生后代的细胞遗传学研究──Ⅱ．来自小麦和彭梯卡（长穗）偃麦草及中间偃麦草杂种后代11个八倍体小偃麦的比较研究

利用染色体配对分析和酯酶及种子醇溶蛋白电泳分析研究了我国育成的１１个八倍体小偃麦,结果表明：（ａ）来源于小麦和中间偃麦草杂交后代的６个部分双二倍体中,中１和中２的偃麦草染色体组不同于中３、中４、中５和小偃７８８２９的偃麦草染色体组;（ｂ）来源于小麦和长穗偃麦草杂交后代的５个部分双二倍体中,小偃７８４的偃麦草染色体组不同于小偃６９３和小偃７６３１中的偃麦草染色体组,表明在长穗偃麦草中有两个互不相同又不同于小麦的染色体组Ｅ和Ｆ,而小偃７４３０和小偃６８中的偃麦草染色体组很可能是Ｅ和Ｆ染色体组的重组体;（ｃ）小偃７８４中的长穗偃麦草染色体组和中５及小偃７８８２９中的中间偃麦草染色体组基本相同,而中２的中间偃麦草染色体组不同于小偃６９３和小偃７６３１中的长穗偃麦草染色体组Ｆ,这意味着在长穗偃麦草和中间偃麦草中可能只有一个共同的染色体组Ｅ。部分双二倍体中酯酶及醇溶蛋白偃麦草染色体特征带的存在和发现,为这些染色体或其片段导入小麦后的鉴定提供了方便。     

不同细胞质的普通小麦"中国春"(Triticum aestivum var.Chinese Spring)与小偃麦杂交F1代的育性与减数分裂行为的研究

15个不同细胞质“中国春”小麦与八倍体小偃麦杂交 ,杂种F1减数分裂的染色体行为表明 :普通小麦与天蓝偃麦草的F或E组染色体之间存在着部分同源关系 ;D2 型细胞质促进部分同源染色体配对、但却抑制同源染色体配对 ;Sv 型细胞质对同源染色体或部分同源染色体的配对均有抑制作用 ;G型细胞质促进同源染色体配对。1 5个不同细胞质“中国春”小麦与六倍体小偃麦杂交 ,F1结实率很低 ,减数分裂中期的染色体行为混乱 ,单价体过多 ,或许意味着在天蓝偃麦草 (Elytrigiain termedium)与长穗偃麦草 (E .elongatum)的E组染色体之间存在着很大差别。随着回交代数的增加 ,选出G型、D2 型、Mt 型、Mu 型等细胞质雄性不育的八倍体小偃麦品系 ,其中D2 型细胞质八倍体小偃麦具有光周期敏感性雄性不育的特征 ;G型细胞质“远中 3”育性正常 ,表明八倍体小偃麦“远中 3”的E组染色体中存在G型胞质的育性恢复基因。     

八倍体小偃麦与普通小麦杂交后代花药培养的研究

本试验研究了八倍体小偃麦与普通小麦杂交后代愈伤组织的诱导频率、雄核发育和秋水仙碱诱导小孢子染色体加倍的效果。结果表明:八倍体小偃麦与普通小麦杂种F_1愈伤组织的产量具有明显的杂种优势;其雄核发育存在均等分裂和不均等分裂等类型,这与小麦中的观察结果相似;在培养基中加入秋水仙碱可以有效地诱导小孢子第一次有丝分裂时染色体加倍。     

“缺体回交法”选育普通小麦异代换系方法的研究

利用从蓝单体自交分离得到的自花结实的4D缺体小麦(缺72180、缺天选15)作母本与3个不同的八倍体小偃麦(小偃784、小偃7631和小偃78829)杂交,再以缺体作为轮回亲本,从F_1或F_2开始连续回交1—2次,在回交中,缺体无论作父本或母本都得到了异代换系,并且发现:(1)在回交过程中,用缺体作母本比作父本更为有效;(2)F_1自交,在F_2群体中选择生长比较正常,染色体数比较少的植株回交,比F_1作母本直接回交效果更好。并对所得的异代换系的特征特性进行了初步的观察研究,发现中间偃麦草(Agropyron intermedium2n=42) 4E染色体(以下用4Ei表示)、长穗偃麦草(Agropyron clongatum 2n=70)的4E染色体(带蓝粒基因,以下用4Ee表示)和4F染色体(带毛叶基因,以下用4Fe表示)均能正常补偿小麦4D染色体。异代换系生长旺盛,育性正常。初步总结了缺体与八倍体小偃麦杂交,回交过程中异代换系的形成规律,证明了“缺体回交法”可以推广应用于八倍体小偃麦等人工合成的新物种,以选育普通小麦异代换系。     

小偃麦的选育及其形成途径的研究

对普通小麦（Ｔｒｉｔｉｃｕｍ ａｅｓｔｉｖｕｍ）与中间偃麦草Ｔｈｉｎｏｐｙｒｕｍ ｉｎｔｅｒｍｅｄｉｕｍ）杂交衍生的八倍体小偃麦,硬粒小麦（Ｔｒｉｔｉｃｕｍ ｄｕｒｕｍ）与中间偃麦草杂交衍生的六倍体小偃麦的形成过程进行系统的细胞遗传学研究,并用荧光原位杂交（Ｆｌｕｏｒｅｓｃｅｎｃｅ ｉｎ ｓｉｔｕ ｈｙｂｒｉｄｉｚａｔｉｏｎ）技术研究了小偃麦的染色体构成。结果表明：小偃麦的形成是由杂种Ｆ１产生非减     

八倍体小偃麦与普通小麦杂交育种的研究

利用八倍体小偃麦与普通小麦杂交,创造了一些异附加系和异代换系,选育出一个特早熟、矮秆、抗病、高产、优质小麦新品种－“早优５０４”。总结了八倍体小偃麦与普通小麦杂交育种程序。     

八倍体小偃麦和普通小麦旗叶及叶鞘光合日变化比较研究

以温室大棚中栽培的普通小麦'中国春'(对照)及八倍体小偃麦'小偃7430'(染色体组为ABDE_1)、'小偃693'(染色体组为ABDF_1)为材料,采用TPS-1光合作用测定系统及FMS-2荧光仪测定了开花期旗叶和叶鞘的净光合速率、气孔导度和叶绿素荧光参数的日变化,以揭示普通小麦与八倍体小偃麦旗叶及其叶鞘的光合作用差异.结果表明:八倍体小偃麦与普通小麦'中国春'的旗叶和叶鞘光合作用均有午休现象,净光合速率于上午11:00左右出现高峰,午间下降,下午又呈现上升趋势,且'小偃693'叶片在上午时上升较快;气孔导度和荧光参数F_v/F_m、Fv/F_o、 Φ_(PS)Ⅱ、ETR的变化趋势与净光合速率相似,而NPQ的变化趋势则相反.各光合作用和叶绿素荧光参数在材料间表现为八倍体小偃麦高于普通小麦'中国春',器官间表现为旗叶高于相应叶鞘,而'小偃693'的叶鞘和'中国春'叶片的相似.研究发现,八倍体小偃麦旗叶和叶鞘的光合效率优于普通小麦'中国春';'小偃693'的光合效率因其较高的光反应活性表现得尤为突出,其叶鞘的光合能力也不容忽视.     

The genetic identity of alien chromosomes in potato breeding lines revealed by sequential GISH and FISH analyses using chromosome-specific cytogenetic DNA markers.

Genomic in situ hybridization (GISH) is one of the most popular and effective techniques for detecting alien chromatin introgressed into breeding lines; however, GISH analysis alone does not reveal the genetic identity of the alien chromosomes. We previously isolated a set of bacterial artificial chromosomes (BACs) specific to each of the 12 potato chromosomes. These BAC clones can be used as chromosome-specific cytogenetic DNA markers (CSCDMs) for potato chromosome identification. Here we demonstrate that GISH and fluorescence in situ hybridization (FISH), using CSCDMs, can be performed sequentially on the same chromosome preparations. Somatic metaphase chromosomes prepared using an enzymatic digestion and "flame-drying" procedure allows repeated probing up to five times without significant damage to chromosome morphology. The sequential GISH and FISH analyses reveal the genomic origin and genetic identity of the alien chromosomes in a single experiment and also determine whether an alien chromosome has been added to the genetic background of potato or is substituting for a homoeologous potato chromosome. The sequential GISH and FISH procedures should be widely applicable for germplasm characterization, especially in plant species with small-sized chromosomes.     

普通小麦×大麦杂交后代中间材料的GISH及PAGE鉴定

利用基因组荧光原位杂交 (GISH)及种子贮藏蛋白聚丙烯酰胺凝胶电泳 (PAGE)对普通小麦×大麦杂交后代中间材料进行了鉴定分析。GISH结果表明 ,WBA984和WBA9812为二体小大麦异附加系 ,WBS0 2 15和WBS0 2 6 4为小大麦二体异代换系 ,WBT0 2 12 5和WBT0 2 183为端部易位系 ;种子贮藏蛋白PAGE分析表明 ,WBA9812和WBS0 2 6 4含有大麦特有的高分子量麦谷蛋白亚基和在γ区含有大麦特有的醇溶蛋白带型 ,WBA9812为大麦 5H附加系 ,WBS0 2 6 4为 1B/ 5H代换系 ,WBT0 2 12 5为 1BL/ 5HL端部易位系。     

抗条锈病小偃麦双体异附加系山农87074-519的鉴定

综合利用抗性接种鉴定、细胞学分析、SSR分子标记和基因组原位杂交(GISH)技术相结合的方法,对从长穗偃麦草与小麦复合杂交后代中选育的抗条锈病种质系山农87074-519进行了鉴定。结果表明,山农87074-519的根尖细胞染色体数目2n=44,花粉母细胞减数分裂中期I(PMCMI)绝大多数细胞内可观察到22个二价体,平均染色体构型2n=44=21.82Ⅱ 0.36Ⅰ,它与普通小麦中国春杂种F1的多数花粉母细胞内染色体构型为2n=21Ⅱ 1Ⅰ,因此它是1个附加了1对长穗偃麦草染色体的双体异附加系;以假鹅冠草St基因组总DNA作探针进行原位杂交发现山农87074-519的44条染色体中有2条出现黄绿色杂交信号,且杂交信号遍布整条染色体,证明其附加的长穗偃麦草染色体为St基组;利用SSR分子标记技术,在170对SSR引物中筛选出特异引物BARC165,它能稳定地在山农87074-519中扩增出长穗偃麦草特异标记BARC165268;将长穗偃麦草中BARC165的特异扩增片段克隆测序后制备成探针进行原位杂交,可在山农87074-519的间期染色体和有丝分裂中期染色体检测到杂交信号。山农87074-519综合农艺性状较好,对条锈病免疫,其抗性基因为显性,且位于附加的长穗偃麦草St基组染色体上,暂将其表示为YrSt。该种质系在小麦的遗传改良中具有重要利用价值。     

用分子原位杂交（GISH）鉴定小麦－簇毛麦双倍体、附加系、代换系和易位系

用生物素标记的簇毛麦（Ｈａｙｎａｌｄｉａｖｉｌｌｏｓａ）染色体组ＤＮＡ（ｔｏｔａｌｇｅｎｏｍｉｃＤＮＡ）作探针,以普通小麦染色体组ＤＮＡ作遮盖（用量１：２００左右）,进行有丝分裂中期和减数分裂中期Ｉ染色体的分子原位杂交（ＧＩＳＨ）,经抗生物素蛋白－辣根过氧化物酶复合物（ｂｉｏ－ｓｔｒｅｐｔａｖｉｄｉｎ－ｈｏｒｓｅｒａｄｉｓｈｐｅｒｏｘｉｄａｓｅ）和联苯胺四盐酸（ＤＡＢ）检测显色后,小麦－簇毛麦双倍体、附加系、代换系和易位系中的簇毛麦染色体及染色体片段显棕色,与显浅蓝色的小麦染色体可明显区分。用ＧＩＳＨ不仅可以检测导入小麦中的簇毛麦染色质,而且可以清楚地显示出易位染色体断裂点的确切位置。将ＧＩＳＨ用于减数分裂期染色体配对分析,还可以清晰形象地显示出同源和非同源染色体之间的配对和分离情况。     

应用基因组原位杂交及RFLP标记鉴定小麦中的大麦染色体

用生物素（Biotin-6-dUTP)标记的大麦Betzes基因组DNA作探针,以普通小麦中国春总DNA作封阻进行基因组原位杂交（Genomeinsituhybridization,简称GISH）,从13株小麦-大麦杂交后代中鉴定出2个含有3条大麦Betzes2H染色体的材料（2n＝43）;2个2H单体异代换系（2n＝42）;7个2H二体异代换系（2n＝42）。用已定位在小麦第2部分同源群短臂上的探针psr131进行RFLP分析,结果表明大麦Betzes、代换系A5有1条区别于小麦中国春的特异带,A     

Detection of alien chromosomes from S-genome species in the addition/substitution lines of bread wheat and visualization of A-, B- and D-genomes by GISH

A modified approach based on the GISH technique for detecting introgressed chromosomes/chromosome arms from closely related S-genome species to wheat genome and for visualization of A-, B- and D-genomes of Triticum aestivum L. (genome AABBDD, 2n = 6x = 42) is presented. For detecting alien chromosomes we investigated two lines of bread wheat, one is an addition line with a pair of chromosome No. 4 short arms from Aegilops searsii (4SsS) and a wheat substitution line with a pair of chromosomes No. 6 from Ae. longissima (6S1). A hybridization mixture consists of two differently labelled DNAs, one from the line used for chromosome spread preparations, and the second from origin species of alien chromosomes. The latter adds different color in the regions of its hybridization showing the presence of alien chromosomes by creating a strong and easily detected combined signal. For discriminating A-, B-, and D-genome chromosomes, the hybridization mixture of differently labelled total DNA from Ae. tauschii--the proposed progenitor of D-genome (detected red) and T. dicoccoides (genome AABB) (detected green) were used. The high temperature of hybridization allows high precision annealing of chromosome/probe sequences and at the same time it sharpens differences between reassociation kinetics of eu- and heterochromatin revealing chromosome substructure. A pre-annealing step increases probe specificity. As a result, we observed brown chromosomes of A-genome, banded green chromosomes of B-genome and red chromosomes of D-genome. Inter genomic invasion of the sequences from A/B-genomes to D-genome has been detected.     

<Emphasis Type="Italic">Agropyron elongatum</Emphasis> chromatin localization on the wheat chromosomes in an introgression line

The introgressed small-chromosome segment of Agropyron elongatum (Host.) Neviski (Thinopyrum ponticum Podp.) in F₅ line II-1-3 of somatic hybrid between common wheat (Triticum aestivum L.) and A. elongatum was localized by sequential fluorescence in situ hybridization (FISH), genomic in situ hybridization (GISH) and karyotype data. Karyotype analysis offered basic data of arm ratios and relative lengths of 21 pairs of chromosomes in parent wheat Jinan177 and hybrid II-1–3. Using special high repetitive sequences pSc119.2 and pAs1 for FISH, the entire B- and D-genome chromosomes were detected. The FISH pattern of hybrid II-1-3 was the same as that of parent wheat. GISH using whole genomic DNA from A. elongatum as probe determined the alien chromatin. Sequential GISH and FISH, in combination with some of the karyotype data, localized the small chromosome segments of A. elongatum on the specific sites of wheat chromosomes 2AL, 1BL, 5BS, 1DL, 2DL and 6DS. FISH with probe OPF-03₁₂₉₆ from randomly amplified polymorphic DNA (RAPD) detected E-genome chromatin of A. elongatum, which existed in all of the small chromosome segments introgressed. Microsatellite primers characteristic for the chromosome arms above were used to check the localization and reveal the genetic identity. These methods are complementary and provide comprehensive information about the genomic constitution of the hybrid. The relationship between hybrid traits and alien chromatin was discussed.     

Limitations of in situ hybridization with total genomic DNA in routine screening for alien introgressions in wheat

In situ hybridization with total genomic DNA (GISH) has become a powerful tool in characterization of alien introgressions in wheat. With recent simplification it can now be used in large scale screening for new chromosome constructs. Its level of resolution in routine applications was tested on sets of recombined wheat-rye chromosomes with genetically determined positions of the translocation breakpoints. The resolution level of GISH visualized by an enzymatic color reaction was much lower than that of GISH with fluorescent probes but both techniques failed to reveal the presence of some distally located breakpoints. The limits of resolution for the two methods were at least 9.8 and 3.5 cM of the relative genetic lengths of chromosome arms, respectively, in configurations with proximal rye and terminal wheat segments when rye DNA was used as a probe. When wheat DNA was used as a probe, a terminal wheat segment estimated to be ca. 1.6 cM in length could not be visualized. An example of induced recombination between a chromosome of Agropyron elongatum and wheat illustrates that these resolution limits of GISH may hamper isolation of critical translocation breakpoints in a chromosome engineering effort.     

Use of fluorescence in situ hybridization as a tool for introgression analysis and chromosome identification in coffee (Coffea arabica L.).

Fluorescence in situ hybridization (FISH) was used to study the presence of alien chromatin in interspecific hybrids and one introgressed line (S.288) derived from crosses between the cultivated species Coffea arabica and the diploid relatives C. canephora and C. liberica. In situ hybridization using genomic DNA from C. canephora and C. arabica as probes showed elevated cross hybridization along the hybrid genome, confirming the weak differentiation between parental genomes. According to our genomic in situ hybridization (GISH) data, the observed genomic resemblance between the modern C. canephora genome (C) and the C. canephora-derived subgenome of C. arabica (Ca) appears rather considerable. Poor discrimination between C and Ca chromosomes supports the idea of low structural modifications of both genomes since the C. arabica speciation, at least in the frequency and distribution of repetitive sequences. GISH was also used to identify alien chromatin segments on chromosome spreads of a C. liberica-introgressed line of C. arabica. Further, use of GISH together with BAC-FISH analysis gave us additional valuable information about the physical localization of the C. liberica fragments carrying the SH3 factor involved in resistance to the coffee leaf rust. Overall, our results illustrate that FISH analysis is a complementary tool for molecular cytogenetic studies in coffee, providing rapid localization of either specific chromosomes or alien chromatin in introgressed genotypes derived from diploid species displaying substantial genomic differentiation from C. arabica.     

Sequential chromosome banding and in situ hybridization analysis.

Different combinations of chromosome N- or C-banding with in situ hybridization (ISH) or genomic in situ hybridization (GISH) were sequentially performed on metaphase chromosomes of wheat. A modified N-banding-ISH/GISH sequential procedure gave best results. Similarly, a modified C-banding - ISH/GISH procedure also gave satisfactory results. The variation of the hot acid treatment in the standard chromosome N- or C-banding procedures was the major factor affecting the resolution of the subsequent ISH and GISH. By the sequential chromosome banding - ISH/GISH analysis, multicopy DNA sequences and the breakpoints of wheat-alien translocations were directly allocated to specific chromosomes of wheat. The sequential chromosome banding- ISH/GISH technique should be widely applicable in genome mapping, especially in cytogenetic and molecular mapping of heterochromatic and euchromatic regions of plant and animal chromosomes.