Effects of invasive Typha × glauca on wetland nutrient pools,denitrification, and bacterial communities are influenced by time since invasion

Invasive plants dramatically shift the structure of native wetland communities. However, less is known about how they affect belowground soil properties, and how those effects can vary depending on time since invasion. We hypothesized that invasion of a wetland by a widespread invasive plant (Typha × glauca) would result in changes in soil nutrients, denitrification, and bacterial communities, and that these effects would increase with time since invasion. We tested these hypotheses by sampling Typha-invaded sites of different ages (~40, 20, and 13 years), a Typha-free, native vegetation site, and a restored site (previously invaded ~30–40 years ago) but that had Typha return within 2 years of the restoration. At each site, we measured Typha stem density, plant species richness, soil nutrients, denitrification rates, and the abundance and composition of bacterial denitrifier communities. All Typha-dominated sites had the least plant species richness regardless of time since invasion. Additionally, sites that were invaded the longest exhibited significantly higher concentrations of soil organic matter, nitrate, and ammonium than the native site. In contrast, denitrification was higher in sites invaded more recently. Denitrifier diversity for the nirS gene was also significantly different, with highest nirS diversity in sites invaded the longest. Interestingly, the denitrifier communities within the restored site were most similar to the ones in T. × glauca sites, suggesting a legacy effect. Our study suggests this invader can alter important ecosystem properties, such as native species richness, nutrient pools, and transformations, as well as bacterial community composition depending on time since invasion.     

Effects of variation in precipitation on the distribution of soil bacterial diversity in the primitive Korean pine and broadleaved forests

Patterns of precipitation have changed as a result of climate change and will potentially keep changing in the future. Therefore, it is critical to understand how ecosystem processes will respond to the variation of precipitation. However, compared to aboveground processes, the effects of precipitation change on soil microorganisms remain poorly understood. Changbai Mountain is an ideal area to study the responses of temperate forests to the variations in precipitation. In this study, we conducted a manipulation experiment to simulation variation of precipitation in the virgin, broad-leaved Korean pine mixed forest in Changbai Mountain. Plots were designed to increase precipitation by 30 % [increased (+)] or decrease precipitation by 30 % [decreased (?)]. We analyzed differences in the diversity of the bacterial community in surface bulk soils (0–5 and 5–10 cm) and rhizosphere soils between precipitation treatments, including control. Bacteria were identified using the high-throughput 454 sequencing method. We obtained a total 271,496 optimized sequences, with a mean value of 33,242 (±1,412.39) sequences for each soil sample. Being the same among the sample plots with different precipitation levels, the dominant bacterial communities were Proteobacteria, Acidobacteria, Actinobacteria, Planctomycetes, and Chloroflexi. Bacterial diversity and abundance declined with increasing soil depth. In the bulk soil of 0–5 cm, the bacterial diversity and abundance was the highest in the control plots and the lowest in plots with reduced precipitation. However, in the soil of 5–10 cm, the diversity and abundance of bacteria was the highest in the plots of increased precipitation and the lowest in the control plots. Bacterial diversity and abundance in rhizosphere soils decreased with increased precipitation. This result implies that variation in precipitation did not change the composition of the dominant bacterial communities but affected bacterial abundance and the response patterns of the dominant communities to variation in precipitation.     

Conversion from natural wetlands to paddy field alters the composition of soil bacterial communities in Sanjiang Plain,Northeast China

The Sanjiang Plain is the largest freshwater wetlands in Northeast China. In order to feed the growing population, about 84 % of the wetlands in this area have been converted to farmland, especially to paddy fields, since the 1950s. However, little is known about the influence of this conversion on soil microbial community composition. In this study, soil samples were collected from two natural wetlands dominated by plant species Carex lasiocarpa and Deyeuxia angustifolia and from a neighboring paddy field that was changed from wetland more than 10 years ago. The composition and diversity of bacterial communities in the soils were estimated by clone library analysis of nearly full length of 16S rDNA sequences. The results revealed that bacterial diversity was higher in paddy fields, and that the composition of bacterial communities differed among the three samples; the difference was more notable between the paddy field and two natural wetlands than between two natural wetlands. The distribution of clones into different bacterial phyla differed among soil samples, and the conversion from natural wetlands to paddy field increased the abundance of Proteobacteria and Firmicutes but decreased the abundance of Chloroflexi. About 63 % and 71 % of clones from two natural wetlands and 49 % of clones from the paddy field had <93 % similarity with known bacteria, suggesting that the majority of bacteria in natural wetland soils in the Sanjiang Plain are phylogenetically novel. In general, this study demonstrated that long-term conversion from natural wetlands to paddy field changes soil bacterial communities in the Sanjiang Plain.     

Shifts in Soil Microflora Induced by Velvetbean (Mucuna deeringiana) in Cropping Systems to Control Root-Knot Nematodes

This project is part of work underway in our laboratories to test the hypothesis that the induction of soil suppressiveness to plant parasitic nematodes that occurs following planting of velvetbean (Mucuna deeringiana (Bort) Merr.) is associated with the development of an antagonistic microflora in soils and rhizospheres. The specific objective of this investigation was to examine long-term microbial shifts associated with the use of velvetbean in rotations to control nematodes. A crop rotation study was conducted in microplots, consisting of three crop cycles. Cycle 1 involved planting of either velvetbean or cowpea (Vigna unguiculata L.) in the first spring. Cycle 2 during the next fall and winter was fallow or cover-cropped with wheat (Triticum aestivum L.) or crimson clover (Trifolium incarnatum L.). Cycle 3 the next spring was soybean (Glycine max (L.) Merr.). Populations and species diversity of bacteria and fungi in soils or rhizospheres were investigated at the end of each cropping cycle. Rhizosphere fungal populations were significantly smaller on velvetbean than on cowpea at the end of cycle 1. The use of velvetbean in cycle 1 significantly decreased rhizosphere bacterial populations on crops in cycle 2, compared to treatments which had cowpea in cycle 1. Velvetbean also influenced bacterial diversity, generally increasing frequency of bacilli, Arthrobacter spp. and Burkholderia cepacia, while reducing fluorescent pseudomonads. Some of these effects persisted through cycle 3. Fungal diversity was influenced in cycle 1 by velvetbean; however, effects generally did not persist through cycles 2 and 3. The results indicate that the use of velvetbean in a cropping system alters the microbial communities of the rhizosphere and soil, and they are consistent with the hypothesis that the resulting control of nematodes results from induction of soil suppressiveness.     

Effects of gravel-sand mulching on soil bacterial community and metabolic capability in the semi-arid Loess Plateau,China

Gravel and sand mulching is an indigenous technology used for the crop yield for at least 300 years in the loess area of northwest China; however, little is known about the changes of soil bacterial community and metabolic capability under the mulching. In this study, we investigated the soil microbial community structure and metabolic functional diversity during mulching using Illumina MiSeq sequencing and Biolog ECO method. Totally, 9417 OTUs were classified at 97% similarity level for soil samples after 0 (control), 4, 7, and 10 years of mulching. Dendrogram result indicated that mulching affected the soil bacterial community; and the higher richness and diversity of bacterial community were detected in mulching samples. The average abundance of soil bacteria (such as Proteobacteria, Actinobacteria, Firmicutes and Nitrospirae) in mulching samples was higher than samples without mulching. Besides, some microbial communities (such as Rhodobacteraceae, Phenylobacterium, Pseudonocardia, Nonomuraea and Aeromicrobium) were only present in the mulched soil samples. However, the lower metabolic capability was observed in mulching samples based on Biolog method, which the main reason for the opposite result might be that the soil objects detected by the two methods are different. In conclusion, these results demonstrated that gravel and sand mulching affected the structure and metabolic capability of bacterial community and was one reason for crop yield.     

Arbuscular mycorrhizal fungal communities along a pedo-hydrological gradient in a Central Amazonian terra firme forest

Little attention has been paid to plant mutualistic interactions in the Amazon rainforest, and the general pattern of occurrence and diversity of arbuscular mycorrhizal fungi (AMF) in these ecosystems is largely unknown. This study investigated AMF communities through their spores in soil in a ‘terra firme forest’ in Central Amazonia. The contribution played by abiotic factors and plant host species identity in regulating the composition, abundance and diversity of such communities along a topographic gradient with different soils and hydrology was also evaluated. Forty-one spore morphotypes were observed with species belonging to the genera Glomus and Acaulospora, representing 44 % of the total taxa. Soil texture and moisture, together with host identity, were predominant factors responsible for shaping AMF communities along the pedo-hydrological gradient. However, the variability within AMF communities was largely associated with shifts in the relative abundance of spores rather than changes in species composition, confirming that common AMF species are widely distributed in plant communities and all plants recruited into the forest are likely to be exposed to the dominant sporulating AMF species.     

Decreasing negative impacts of harvesting over insect communities using variable retention in southern Patagonian forests

Variable retention is an alternative silvicultural approach to timber forest management, which consist in a regeneration treatment with different degrees and patterns of stand retention. It has been proposed to mitigate harmful effects of harvesting, but effectiveness in insect conservation remains unknown in southern Patagonian Nothofagus pumilio forests. Here, the objectives were to: (1) define a baseline of insect diversity in old-growth forests along a site quality gradient (high, medium and low, associated to the forest productivity of each site); (2) evaluate stands with different retention treatments [aggregated (AR) surrounded by dispersed (DR) retention, and aggregated retention surrounded by clear-cut (CC)] and to compare with old-growth unmanaged forests (OGF); and (3) assess temporal changes during the first 4 years after harvesting (YAH). In a long term forest research plot, mobile epigean insect richness and relative abundance were characterized and classified in seven response type groups, using a wide spectrum sampling set. Data analyses included parametric and permutational ANOVAs, multivariate classification and ordinations. There were found 79 species before harvesting, and that richness was not related to site quality. After harvesting, 84 new species were added considering all treatments along the first four sampled YAH, of which 65 % were added to OGF, while in harvested sites richness and abundance directly diminished with retention degree (OGF > AR > DR > CC) due to incoming species cannot compensate the lost of them. However, fluctuations in diversity were observed along the YAH. Therefore, harvesting reduces insect richness in N. pumilio forests independently of the treatment, but the original insect assemblage significantly changes due to loss of sensitive species and introduction of others from surrounding environments. Despite this, inclusion of aggregates greatly diminished harvesting impacts because insect assemblage is favoured when structural complexity is preserved, conserving richness and abundance at similar levels than in old-growth forests. However, more studies are necessary to evaluate effects of different aggregate size, shape and distribution into harvested forests, as well as their fragmentation and connectivity at landscape level.     

Individual and interactive effects of Amur honeysuckle (Lonicera maackii) and white-tailed deer (Odocoileus virginianus) on herbs in a deciduous forest in the eastern United States

Invasive Amur honeysuckle (Lonicera maackii) has reduced diversity, growth, and reproduction of native herbs in the Midwest USA. These effects may be compounded by browsing from overabundant white-tailed deer (Odocoileus virginianus). We used experimental treatments of honeysuckle (present, absent, removed) and deer (present, excluded) to measure their independent and interactive impacts on diversity, richness, and abundance of herbs in a deciduous forest in southwestern Ohio, USA. Species diversity and richness of herbs were not affected by honeysuckle or deer. Honeysuckle reduced abundance of annuals, graminoids, spring perennials, and summer perennials; deer decreased abundance of annuals and spring perennials, but increased abundance of graminoids. A deer × honeysuckle interaction showed that when honeysuckle was absent or removed, browsing by deer kept abundance of annuals and spring perennials low. Effects of honeysuckle and deer also were assessed for the three most abundant herbs: honeysuckle reduced abundance of Carex rosea and Sanicula odorata, and deer reduced abundance of Viola soraria. Herb abundance varied seasonally and annually. Honeysuckle and deer reduced number of leaves/stem of Maianthemum racemosum and a deer × honeysuckle interaction indicated that the negative effect of honeysuckle was released only when deer were excluded. Herb abundance and M. racemosum rebounded to or near to control levels after removal of honeysuckle. Our findings revealed that impacts of invasive honeysuckle or overabundant deer were not the same across all levels of biological organization (i.e., individual species, growth forms, community measures of species diversity/richness). Measuring impacts of these species at multiple levels of biological organization, considering deer × honeysuckle interactions, and collecting data for several years to account for seasonal and annual fluctuations will help guide management plans. The rapid response by herbs to removal of honeysuckle demonstrated the resilience of this community and is a hopeful sign for restoration of native understory herbs.     

Changes in fungal diversity and composition along a chronosequence of Eucalyptus grandis plantations in Ethiopia

Eucalyptus tree species are widely used in Ethiopian plantations, but the impact of these plantations on the soil fungal communities is still unknown. We assessed the changes in diversity, species composition and ecological guilds of the soil fungal communities across tree ages of Eucalyptus grandis plantations by DNA metabarcoding of ITS2 amplicons. Changes in soil fungal species composition, diversity and ecological guilds were related to stand age but also to fertility changes. The relative abundance of saprotrophs and pathogens were negatively correlated with stand age, and positively with soil fertility. In contrast, the relative abundance and diversity of ectomycorrhizal species were higher in older, less fertile stands, including well-known cosmopolitan species but also species associated with Eucalyptus, such as Scleroderma albidum and Descomyces albellus. We show that soil fungal community changes are linked to progressive soil colonization by tree roots but are also related to soil fertility changes.     

The invasive spider mite Tetranychus evansi (Acari: Tetranychidae) alters community composition and host-plant use of native relatives

The tomato spider mite Tetranychus evansi Baker and Pritchard (Acari: Tetranychidae), is a worldwide pest of solanaceous crops that has recently invaded many parts of the world. In the present study we examined the ecological impact of its arrival in the Mediterranean region. The spider mite and phytoseiid mite assemblages in various crop and non-crop plants in three areas of Valencia (Spain) were studied a few months before and 10 years after the invasion of T. evansi. According to rarefaction analyses, the invasion of T. evansi did not affect neither the total number of species in the mite community examined (spider mite and phytoseiid species) nor the number of species when the two communities were examined separately. However, after the invasion, the absolute and relative abundance of the native Tetranychus species was significantly reduced. Before the invasion, T. urticae and T. turkestani were the most abundant spider mites, accounting for 62.9 and 22.8 % of the specimens. After the invasion, T. evansi became the most abundant species, representing 60 % of the total spider mites recorded, whereas the abundance of T. urticae was significantly reduced (23 %). This reduction took place principally on non-crop plants, where native species were replaced by the invader. Null model analyses provided evidence for competition structuring the spider mite community on non-crop plants after the invasion of T. evansi. Resistance to acaricides, the absence of efficient native natural enemies, manipulation of the plant defenses and the web type produced by T. evansi are discussed as possible causes for the competitive displacement.