建鲤生长激素受体基因分离、转录子多态性以及组织表达特性

使用PCR、RT-PCR和RACE方法分离克隆了建鲤基因组内的4个jlGHRs基因,同源性分析和系统树表明它们两两分属于鱼类GHR1和GHR2,命名为jlGHR1a、jlGHR1b;jlGHR2a、jlGHR2b。jlGHR1s和jlGHR2s的两个旁系同源基因间氨基酸差异分别为5%和11%,但功能保守区FGVFS基序、Box1、Box2基本一致,jlGHR1s和jlGHR2s氨基酸差异为41%。jlGHRs和斑马鱼GHRs基因结构相同,在阅读框内存在7个内含子,两旁系同源基因间内含子长度或序列存在差异。jlGHR1s、jlGHR2s与不同鱼类GHR1、GHR2同源性高低与传统分类地位一致。实验过程中发现建鲤肝脏存在jlGHRs的多种转录子,包括丢失了外显子4的jlGHR1b’、保留了内含子3的jlGHR2a’、丢失了部分外显子8的jlGHR2as。实时定量RT-PCR组织表达结果显示4个jlGHRs在脑、肝、心、头肾、肾、肠、脾、肌肉各组织中均有表达,但表达量差异明显,其中肌肉组织中4个基因表达量均最高,脑中4个基因的表达水平相当,其余各组织中jlGHR2b的表达量均最高。从多转录子和较低表达量推测jlGHR2a所受的选择压力低于jlGHR2b。鲤鱼基因组内分离到GHR1、GHR2的两个旁系同源基因在功能基因方面证实了鲤鱼体内存在两套基因,表明鲤鱼是研究同源基因变异分化的好材料,也为今后正确查找jlGHRs基因上的SNP位点奠定了基础。     

人同源框基因Lhx4 cDNA序列的获得,染色体定位和基因组分析

Lhx4基因是LIM同源框基因家族的一员 ,它在运动神经元的发育过程中发挥着重要的作用 .从人脊髓cDNA文库中筛选到了 1个人源性Lhx4基因的cDNA全长序列 ,它与鼠源性的Lhx4基因的cDNA序列有 92 %同源性 .它的基因被定位在 1号染色体 1q 2 4 .1- 1q 2 4 .3的位置 ,并包含有 6个外显子 .其中同源框结构域由外显子 4和 5表达 ,LIM结构域 1由外显子 2表达 ,LIM结构域2由外显子 3表达 .     

Dystrophin基因3-7号外显子缺失后下游新翻译区启动与BMD关系的生物信息学分析

目的:研究dystrophin基因3-7号外显子缺失后下游新翻译区启动与贝克氏肌营养不良(Becker muscular dystrophy,BMD)的关系及可能机制.方法:用生物信息学方法对dystrophin基因3-7号外显子缺失后可能的启动子、开放阅读框、翻译起始位点、蛋白疏水性性质改变及重要结构域进行分析.结果:3-7号外显子缺失后,起始于正常肌肉启动子的转录体,其翻译阅读框提前终止,但在8号外显子内可能启动一个新的翻译阅读框;内含子2或7里可能含有类似启动子的元件,也可能导致8号外显子内翻译区的启动.新阅读框编码的蛋白仍然保留有重要的功能区,患者可以表现为BMD.结论:dystrophin基因3-7号外显子缺失后下游新翻译区仍有存在启动的可能,患者可以表现为BMD表型.     

北极狐GHR基因单核苷酸多态性及其与生长性状的相关性分析

文章采用单链构象多态性(PCR-SSCP)和DNA测序的方法检测了北极狐生长激素受体(Growth hormne receptor,GHR)基因的单核苷酸多态性(SNPs),并针对该群体的特点建立合适的统计分析模型,对GHR基因多态性与生长性状的相关性进行了分析。结果表明,在北极狐GHR基因的外显子1和外显子5上发现了4个多态位点,分别为5′UTR上的G3A和外显子1上的C99T突变,外显子5上的T59C和G65A突变;GHR基因G3A和C99T多态性与母狐的体重性状显著相关(P0.05),T59C和G65A多态性与公狐的体重性状显著相关(P0.05),与母狐的皮张长度性状极显著相关(P0.01)。因此,可以利用以上点突变对北极狐的体重及皮张长度性状进行标记辅助选择研究,以达到快速选育出快大、优质的北极狐的目的。     

鹅掌楸LcUGE基因的克隆和组织表达分析

为了解鹅掌楸(Liriodendron chinense)的UGE基因功能,采用RACE和EPIC-PCR技术克隆到2个UGE基因,命名为LcUGE1和LcUGE2。结果表明,LcUGE1基因的c DNA全长为1 531 bp,包含1 050 bp的开放阅读框,编码349个氨基酸, gDNA长度为11 920 bp;LcUGE2基因的c DNA长度为1 378 bp,包含1 056 bp的开放阅读框,编码351个氨基酸,g DNA长度为6544 bp。LcUGE1和LcUGE2基因均含有9个外显子和8个内含子,且外显子长度和内含子剪切位点序列几乎一致,但内含子片段长度存在显著差异。编码的LcUGE1和LcUGE2蛋白高度保守,保守性达到82%。LcUGE1基因在雄蕊中表达量最高,而LcUGE2基因则在花萼中表达量最高。这表明LcUGEs基因可能参与鹅掌楸的生殖发育过程。     

尼罗罗非鱼生长激素及其受体的cDNA克隆与mRNA表达的雌雄差异

尼罗罗非鱼(Oreochromis niloticus)雌雄鱼生长差异明显,为了探讨其原因,本文采用RT-PCR方法克隆了尼罗罗非鱼生长激素(Growthhormone,GH)及其受体(Growth hormone receptor,GHR)的cDNA序列,并应用半定量RT-PCR方法比较了雌、雄尼罗罗非鱼垂体GHmRNA、肝脏GHRmRNA、肌肉GHRmRNA的表达差异。序列分析表明:GH开放阅读框为615bp,共编码204个氨基酸;GHR开放阅读框为1908bp,共编码635个氨基酸。以RT-PCR方法研究了GH、GHR在各组织的分布情况,结果表明:GH仅在垂体中检测到有表达,而GHR在所检测的18种组织中均有表达,其中以肝脏、肌肉、性腺、下丘脑、胸腺表达量较高。以半定量RT-PCR方法进一步比较了雌、雄尼罗罗非鱼垂体GHmRNA、肝脏GHRmRNA、肌肉GHRmRNA的表达量,结果表明:雄鱼垂体GHmRNA和肝脏GHRmRNA的表达量均显著高于雌鱼,肌肉GHRmRNA的表达量则无显著差异,推测垂体GHmRNA和肝脏GHRmRNA表达的雌雄差异是尼罗罗非鱼雌雄生长差异的主要原因之一。     

伴性矮小型鸡GH、GHR和IGF-1基因的表达变化

采用荧光实时定量PCR的方法, 从转录水平上分析了伴性矮小型鸡和普通鸡肝脏中GH、GHR和IGF-1基因的表达变化趋势。结果表明：伴性矮小型鸡和普通鸡肝脏组织中GH的mRNA表达量没有明显差异, 而GHR在矮小鸡中的表达量明显比普通鸡的高3倍多, 但IGF-1基因在矮小鸡肝脏中的表达量却远远低于普通鸡, 差异达到2个数量级。这表明, 伴性矮小型鸡GHR外显子10 和3′非翻译区的长片断缺失并没有降低GHR基因的表达, 相反有所增高, 这一过程中可能存在相应的功能代偿机制。与此同时, 在伴性矮小型鸡肝脏中几乎观察不到IGF-1基因的表达, 证明正是由于GHR基因的缺陷影响了GH生理效应的发挥。实验结果印证了伴性矮小表型与GH和GHR的转录水平无关, 而可能是GHR编码产物异常阻碍了GH-GHR-IGF信号通路, 导致IGF-1表达受阻, 不能发挥正常的生理功能。     

南方鲇两种生长激素受体的结构分析及其组织分布和激素调节

采用生物信息学方法,从东方纯（Fugurubripes）基因组中分离出两种不同基因编码的GHR1（fGHR1）和GHR2（fGHR2）。随后设计引物,采用RT-PCR和Smart^TM Race相结合的方法从南方鲇（Silurus meridionalis）肝脏中克隆出两种不同基因编码的生长激素受体,即GHR1（scGHR1）和GHR2（scGHR2）cD-NA,其全长分别为1985bp（编码602个氨基酸）和2300bp（编码553个氨基酸）。这两种受体都含有生长激素受体典型的标志性基序FGDFS,以及细胞内属于细胞因子受体家族共有的Box1和Box2序列框。同时两者又存在差异,表现在胞外半胱氨酸残基和胞内酪氨酸残基数目的不同。采用半定量RT-PCR方法研究了scGHR1和scGHR2在南方鲇各组织中表达量的差异,结果表明：scGHRl和scGHR2有广泛的组织分布,在肝脏中两者的表达量最高。用17p雌二醇（E2）、17α-甲基睾酮（MT）和可的松（conisol）对南方鲇进行药物处理,结果表明E2能够下调肝脏scGHR1和scGHR2 mRNA水平,而MT上调scGHR1和scGHR2 mRNA水平。同时,经cortisol处理后scGHR1 mRNA表达水平上升,而scGHR2 mRNA表达水平不变。     

不同地域卵黄萤荧光素酶基因的克隆与序列分析

为了比较不同地域萤火虫荧光素酶基因的进化关系，通过GenBank中已知的荧光素酶基因保守区段设计引物，利用5′ RACE（rapid amplification of cDNA ends）和3′ RACE技术克隆了来自云南省文山州和西双版纳州的同种卵黄萤荧光素酶基因cDNA和全基因序列.来自不同地域的2种卵黄萤荧光素酶在基因序列上存在3个不同碱基位点，但是它们编码的荧光素酶只存在1个不同的氨基酸.卵黄萤荧光素酶基因全长（从起始密码子到终止密码子）1998 bp，包含7个外显子,6个内含子，其cDNA序列共1976 bp，包含102 bp 5′ UTR (untranslated region)、1635 bp的荧光素酶基因开放阅读框和239 bp的3′ UTR序列.卵黄萤荧光素酶基因的开放阅读框编码1个544个氨基酸的蛋白质，比同属的其它几种荧光素酶少4个氨基酸. 来自2个不同地域的卵黄萤荧光素酶在进化上是比较保守的，它们与北美萤火虫Photinus pyralis荧光素酶在碱基序列上分别有629%和63%相似性.     

猪UCP2基因5′调控区和外显子1的遗传变异研究

解偶联蛋白家族 (uncoupling proteins,UCPs) 是线粒体内膜的转运蛋白,具有解离氧化磷酸化偶联的功能,对机体能量平衡涉及的体重 (肥胖)、静止代谢率和食物转化效率等性状具有显著的影响. 首次对猪UCP2基因外显子1及开放阅读框上游部分序列 (－80～0) 进行了多态性分析,通过PCR-SSCP发现猪群内存在3种单倍型,经测序分析发现存在3个SNPs位点,分别位于G-42A、C-50T和T-51C位点,这3个SNPs位点均是首次发现的. 该研究表明,T-C-G紧密连锁,C-T-A突变也紧密连锁. 利用转录因子在线分析软件TFSEARCH (ver 1.3),对UCP2基因开放阅读框上游部分序列 (－80～0) 进行潜在转录因子结合位点预测,发现该片段中的碱基T→C(－51)、C→T(－50) 和G→A(－42)突变,导致此处比野生型单倍型A (T-C-G碱基连锁) 少了一个AML-1a转录因子结合位点. 内江猪存在A、B和AB三种单倍型,而其他猪种仅有单倍型A,说明内江猪具有独特的种质特性.     

Growth hormone receptor sequence changes do not play a role in determining height in children with idiopathic short stature

BACKGROUND/AIMS: In children with short stature, in whom growth hormone deficiency has been excluded, the presence of a normal or elevated growth hormone concentration concomitant with low insulin-like growth factor I suggests growth hormone insensitivity (GHI). Previous reports suggest that heterozygous mutations in the growth hormone receptor gene (GHR) may account for about 5% of children with idiopathic short stature (ISS). In the present study we have attempted to determine whether mutations in the GHR explain the short stature and growth retardation in a cohort of children with ISS and characteristics suggesting GHI. METHODS: For the present study 33 children with clinical and biochemical characteristics of GHI were selected from a cohort of 150 children of short stature. Molecular analysis of the GHR was performed using a single-strand conformation polymorphism technique and sequencing. Ten different sequence changes in 19 (58%) out of 33 children were identified, 9 of them novel and 1 that had been described previously. RESULTS: Two changes were found in exons 2 and 6. The known polymorphism of exon 6 (G168) was significantly more common in the control subjects than in our study group (63.5 vs. 30%; p < 0.0001). In the intronic sequences 8 previously undescribed DNA changes were found. The screening of the affected children's family members revealed that both normal and short stature members carried the same variants. The study group did not significantly differ from the controls in retention (GHRfl) or exclusion (GHRd3) of exon 3. CONCLUSION: Our study suggests that sequence changes of the GHR are common in children with ISS. The presence of these sequence changes in the control subjects as well as in normal stature family members indicates that these changes represent a simple polymorphism of the GHR. Such DNA changes are more prevalent than previously recognized, and they do not seem to play a contributory role in the etiology of short stature.     

Alternative processing of bovine growth hormone mRNA is influenced by downstream exon sequences.

In a previous report, we described the presence, in pituitary tissue, of an alternatively processed species of bovine growth hormone mRNA from which the last intron (intron D) has not been removed by splicing (R. K. Hampson and F. M. Rottman, Proc. Natl. Acad. Sci. USA 84:2673-2677, 1987). Using transient expression of the bovine growth hormone gene in Cos I cells, we observed that splicing of intron D was affected by sequences within the downstream exon (exon 5). Deletion of a 115-base-pair FspI-PvuII restriction fragment in exon 5 beginning 73 base pairs downstream of the intron 4-exon 5 junction resulted in cytoplasmic bovine growth hormone mRNA, more than 95% of which retained intron D. This contrasted with less than 5% of the growth hormone mRNA retaining intron D observed with expression of the unaltered gene. Insertion of a 10-base-pair inverted repeat sequence, CTTCCGGAAG, which was located in the middle of this deleted segment, partially reversed this pattern, resulting in cytosolic mRNA from which intron D was predominantly removed. More detailed deletion analysis of this region indicated that multiple sequence elements within the exon 5, in addition to the 10-base-pair inverted repeat sequence, are capable of influencing splicing of intron D. The effect of these exon sequences on splicing of bovine growth hormone precursor mRNA appeared to be specific for the growth hormone intron D. Deletions in exon 5 which resulted in marked alterations in splicing of growth hormone intron D had no effect on splicing when exon 5 of bovine growth hormone was placed downstream of the heterologous bovine prolactin intron D. Deletions in exon 5 which resulted in marked alterations in splicing of growth hormone intron D had no effect on splicing when exon 5 of bovine growth hormone was placed downstream of the heterologous bovine prolactin intron D. The results of this study suggest a unique interaction between sequences located near the center of exon 5 and splicing of the adjacent intron D.     

Disruption of growth hormone receptor gene causes diminished pancreatic islet size and increased insulin sensitivity in mice

Growth hormone, acting through its receptor (GHR), plays an important role in carbohydrate metabolism and in promoting postnatal growth. GHR gene-deficient (GHR(-/-)) mice exhibit severe growth retardation and proportionate dwarfism. To assess the physiological relevance of growth hormone actions, GHR(-/-) mice were used to investigate their phenotype in glucose metabolism and pancreatic islet function. Adult GHR(-/-) mice exhibited significant reductions in the levels of blood glucose and insulin, as well as insulin mRNA accumulation. Immunohistochemical analysis of pancreatic sections revealed normal distribution of the islets despite a significantly smaller size. The average size of the islets found in GHR(-/-) mice was only one-third of that in wild-type littermates. Total beta-cell mass was reduced 4.5-fold in GHR(-/-) mice, significantly more than their body size reduction. This reduction in pancreatic islet mass appears to be related to decreases in proliferation and cell growth. GHR(-/-) mice were different from the human Laron syndrome in serum insulin level, insulin responsiveness, and obesity. We conclude that growth hormone signaling is essential for maintaining pancreatic islet size, stimulating islet hormone production, and maintaining normal insulin sensitivity and glucose homeostasis.     

Isolation, characterization, and distribution of two cDNAs encoding for growth hormone receptor in rainbow trout (Oncorhynchus mykiss)

Growth hormone (GH) plays important roles in a vast array of physiological processes, including growth, metabolism, and reproduction. In this study, cDNAs for two unique growth hormone receptor variants were cloned and sequenced from rainbow trout. The two cDNAs, one consisting of 2920 bp and the other of 2820 bp, share 87.2% identity in nucleotide sequence and 85.5% identity in deduced amino acid sequence and presumably arose through gene duplication. The cDNAs encode for putative 593- and 594-amino acid growth hormone receptors (designated GHR1 and GHR2, respectively), each containing a single transmembrane domain and other motifs characteristic of the receptor family. Both GHR1 and GHR2 mRNAs were present in all tissues examined. Trout GHR mRNAs are differentially expressed, both in terms of abundance among tissues and in terms of abundance within selected tissues. GHR1 was more abundant than GHR2 in the brain, whereas GHR2 was more abundant than GHR1 in pancreas and spleen. These findings expand our understanding of the evolution of the GH receptor family and suggest that independent mechanisms serve to regulate the tissue-specific expression of GHR mRNAs.     

Molecular evolution of coding and non-coding sequences of the growth hormone receptor (GHR) gene in the family Bovidae

The GHR gene exon 1A and exon 4 with fragments of its flanking introns were sequenced in twelve Bovidae species and the obtained sequences were aligned and analysed by the ClustalW method. In coding exon 4 only three interspecies differences were found, one of which had an effect on the amino-acid sequence--leucine 152 proline. The average mutation frequency in non-coding exon 1A was 10.5 per 100 bp, and was 4.6-fold higher than that in coding exon 4 (2.3 per 100 bp). The mutation frequency in intron sequences was similar to that in non-coding exon 1A (8.9 vs 10.5/100 bp). For non-coding exon 1A, the mutation levels were lower within than between the subfamilies Bovinae and Caprinae. Exon 4 was 100% identical within the genera Ovis, Capra, Bison, and Bos and 97.7% identical for Ovis moschatus, Ammotragus lervia and Bovinae species. The identity level of non-coding exon 1A of the GHR gene was 93.8% between species belonging to Bovinae and Caprinae. The average mutation rate was 0.2222/100 bp/MY and 0.0513/100 bp/MY for the Bovidae GHR gene exons 1A and 4, respectively. Thus, the GHR gene is well conserved in the Bovidae family. Also, in this study some novel intraspecies polymorphisms were found for cattle and sheep.     

Studies with a growth hormone antagonist and dual-fluorescent confocal microscopy demonstrate that the full-length human growth hormone receptor, but not the truncated isoform, is very rapidly internalized independent of Jak2-Stat5 signaling.

We have investigated trafficking of two negative regulators of growth hormone receptor (GHR) signaling: a human, truncated receptor, GHR1-279, and a GH antagonist, B2036. Fluorescent-labeled growth hormone (GH) was rapidly internalized by the full-length GHR, with >80% of the hormone internalized within 5 min of exposure to GH. In contrast, <5% of labeled GH was internalized by cells expressing truncated GHR1-279. Using another truncated receptor, GHR1-317 fused to enhanced green fluorescent protein (EGFP), we have exploited fluorescence energy transfer to monitor the trafficking of ligand-receptor complexes. The data confirmed that internalization of this truncated receptor is very inefficient. It was possible to visualize the truncated GHR1-317-EGFP packaged in the endoplasmic reticulum, its rapid movement in membrane bound vesicles to the Golgi apparatus, and subsequent transport to the cell membrane. The GH antagonist, B2036, blocked Jak2-Stat5-mediated GHR signaling but was internalized with a similar time course to native GH. The results: 1) demonstrate the rapid internalization of GH when studied under physiological conditions; 2) confirm the hypothesis that internalization of cytoplasmic domain truncated human GHRs is very inefficient, which explains their dominant negative action; and 3) show that the antagonist action of B2036 is independent of receptor internalization.