Individual variability of behavioural responses by Wandering Albatrosses (Diomedea exulans) to human disturbance

Sub-Antarctic Marion Island has had a permanent research station for 50 years and the islands Wandering Albatrosses have been intensively studied for 20 years. The reactions of breeding birds to approaches by a human on foot were recorded. Three response variables were calculated: intensity of vocal reaction (IVR), intensity of non-vocal reaction (INR) and overall response index (ORI). At 5 m from the nest, twice as many birds stood and/or vocalised as at 15 m. Nearest neighbour distance, age and gender did not explain individual variability of responses. Study colony birds had higher IVR scores than non-study colony birds; birds at colonies closest to the station had the highest ORI scores. A better breeding record was associated with lower IVR and ORI scores, but a causative relationship remains to be demonstrated. A minimum viewing distance of 25 m is recommended for breeding Wandering Albatrosses.

---

Leitlinien zur molekulargenetischen Diagnostik: Fragiles-X und Fragiles-X assoziiertes Tremor/Ataxie Syndrom

Ohne Zusammenfassung

---

Hennigian Phylogenetic Systematics and the ‘Groundplan’ vs. ‘Post-Groundplan’ Approaches: A Reply to Kukalová-Peck

The recent contribution by Jarmila Kukalová-Peck on Hennigian phylogenetics and hexapod limb evolution is critically evaluated.

Semi-automated, Membrane-Based Protocol for DNA Isolation from Plants

Many plant species are considered difficult for DNA isolation due to their high concentrations of secondary metabolites such as polysaccharides and polyphenols. Several protocols have been developed to overcome this problem, but they are typically time-consuming, not scalable for high throughput and not compatible with automation. Although a variety of commercial kits are available for plant DNA isolation, their cost is high and these kits usually have limited taxonomic applicability. In a previous study we developed an inexpensive automation-friendly protocol for DNA extraction from animal tissues. Here we demonstrate that a similar protocol allows DNA isolation from plants.

Hierarchical analysis of piecewise affine models of gene regulatory networks

A key point in the analysis of dynamical models of biological systems is to handle systems of relatively high dimensions. In the present paper we propose a method to hierarchically organize a certain type of piecewise affine (PWA) differential systems. This specific class of systems has been extensively studied for the past few years, as it provides a good framework to model gene regulatory networks. The method, shown on several examples, allows a qualitative analysis of the asymptotic behavior of a PWA system, decomposing it into several smaller subsystems. This technique, based on the well-known strongly connected components decomposition, is not new. However, its adaptation to the non-smooth PWA differential equations turns out to be quite relevant because of the strong discrete structure underlying these equations. Its biological relevance is shown on a 7-dimensional PWA system modeling the gene network responsible for the carbon starvation response in Escherichia coli.

---

Is it a revolution?

Jablonka and Lamb's claim that evolutionary biology is undergoing a ‘revolution’ is queried. But the very concept of revolutionary change has uncertain application to a field organized in the manner of contemporary biology. The explanatory primacy of sequence properties is also discussed.

Gridcast—a next generation broadcast infrastructure?

Gridcast is an R&D project investigating grid ideas and technologies in the broadcasting technical infrastructure. In this paper I discuss the business and technical issues in building infrastructures to support broadcasters and outline the structure of the Gridcast grid-based service oriented architecture for broadcasting playout support.

Corpus Interruptus: Biotech Drugs, Insurance Providers and the Treatment of Breast Cancer

In researching the biomedically-engineered drug Neulasta (filgrastim), a breast cancer patient becomes aware of the extent to which knowledge about the development and marketing of drugs influences her decisions with regard to treatment. Time spent on understanding the commercial interests of insurers and pharmaceutical companies initially thwarts but ultimately aids the healing process. This first-person narrative calls for physicians to recognize that the alignment of commercial interests transgresses the patient’s humanity.

Herder Perceptions on Impacts of Range Enclosures,Crop Farming,Fire Ban and Bush Encroachment on the Rangelands of Borana,Southern Ethiopia

This study focuses on community-based knowledge to analyze the impacts of range enclosures, crop farming, fire suppression and bush encroachment on the communal rangelands of Borana, southern Ethiopia. The knowledge of local herders is the basis for decision making in the utilization and management of grazing lands. We used Borana oral history associated with the period of the gada system to reconstruct environmental change that spans a period of 48 years. Our results show that the use of communities’ perceptions as a basis for evaluating the impacts of land use change on the environment makes an important methodological contribution. Communities’ responses to changing land use resulted in the development of range enclosures, the expansion of crop farming and the fragmentation of the communal rangelands, while the suppression of fire contributed to the expansion of bush encroachment. The overall impact was forage scarcity and greater vulnerability of stock during drought years. We conclude that policymakers could use communities’ knowledge of environmental change to improve the use of the rangelands. We propose that sustainable use of the southern rangelands in the future will require a greater focus on regulating the expansion of enclosures, crop farming and ranching, as well as reintroducing fire where necessary, to control the expansion of bush cover.

The connectionist framework for gene regulation

I show that gene regulation networks are qualitatively consistent and therefore sufficiently similar to linearly seperable connectionist networks to warrant that the connectionist framework be applied to gene regulation. On this view, natural selection designs gene regulation networks to overcome the difficulty of development. I offer some general lessons about their evolvability that can be learned by examining the generic features of connectionist networks.

A finite volume method for stochastic integrate-and-fire models

The stochastic integrate and fire neuron is one of the most commonly used stochastic models in neuroscience. Although some cases are analytically tractable, a full analysis typically calls for numerical simulations. We present a fast and accurate finite volume method to approximate the solution of the associated Fokker-Planck equation. The discretization of the boundary conditions offers a particular challenge, as standard operator splitting approaches cannot be applied without modification. We demonstrate the method using stationary and time dependent inputs, and compare them with Monte Carlo simulations. Such simulations are relatively easy to implement, but can suffer from convergence difficulties and long run times. In comparison, our method offers improved accuracy, and decreases computation times by several orders of magnitude. The method can easily be extended to two and three dimensional Fokker-Planck equations.

Skunkworks in the Embers of the Cedar Fire: Enhancing Resilience in the Aftermath of Disaster

A coalition of environmental activists and professionals created the San Diego Fire Recovery Network (SDFRN) while the largest wildfire in California history was still burning at the city’s edge in October 2003. Acting quickly while the citizenry questioned governmental ability to protect their rapidly growing region, SDFRN proposed to reduce fire risk in a way that altered residential knowledge practices and identity while reshaping governance relationships. While this effort stalled after governmental agencies restored public confidence through massive fire prevention initiatives, SDFRN’s efforts may not have been in vain. Retained within collective memory, SDFRN contributed to community resilience by diversifying possible responses to environmental change and uncertainty. In this way, flexible, informal learning organizations such as SDFRN may serve as “skunkworks,” seizing on disaster in order to incubate social–ecological relationships that might avert greater tragedies to come.

The Behavioral Ecology of Shellfish Gathering in Western Kiribati,Micronesia 1: Prey Choice

Focusing on contemporary shellfish exploitation among several atoll communities in Kiribati, Micronesia, this paper examines the relationship between human foragers and their invertebrate prey via the prey choice or diet breadth model derived from optimal foraging theory. Shellfish, like many other reef organisms, are relatively sedentary and predictable, but these characteristics make them susceptible to over-harvesting. The research reveals that shellfish gatherers are foraging in a manner that matches the predictions of optimal foraging theory. The work adds to our understanding of optimal foraging decisions in atoll settings by critically evaluating the depiction of atoll dwellers as conservationists.

Common Ground: Risk, Scarcity, and Shared Resources in Goan Agriculture

In the Indian state of Goa, communally owned agricultural land has persisted through indigenous state rule, colonial occupation and postcolonial liberation. We show that in Goa, and indeed elsewhere in the world, communally owned land provides protection against scarcity, risk, and state revenue demands in wet rice agriculture. When wet rice agriculture is the primary agricultural activity, communally owned land is an effective way to utilize resources. These findings add to the literature that challenges the inevitability of the tragedy of commonly owned resources.

Albino Weddell seal at Cape Shirreff,Livingston Island,Antarctica

To our knowledge, this paper is the first record/report of a juvenile light-coloured Weddell seal (Leptonychotes weddellii) at Cape Shirreff, Livingston Island in January 1998, determining that it was an albino individual. Based on available literature, three cases of albino seals have been reported exclusively for Harbour seal pups, and no albino has been reported for Antarctic pagophilic true seals. Therefore, this is the first confirmed case of albinism in Antarctic pagophilic true seals species, indicating that this phenomenon is indeed of a rare occurrence.

Language processing with dynamic fields

We construct a mapping from complex recursive linguistic data structures to spherical wave functions using Smolensky’s filler/role bindings and tensor product representations. Syntactic language processing is then described by the transient evolution of these spherical patterns whose amplitudes are governed by nonlinear order parameter equations. Implications of the model in terms of brain wave dynamics are indicated. Electronic supplementary material  The online version of this article (doi: ) contains supplementary material, which is available to authorized users.

A single operon-encoded form of the acetyl-CoA decarbonylase/synthase multienzyme complex responsible for synthesis and cleavage of acetyl-CoA in <Emphasis Type="Italic">Methanosarcina thermophila</Emphasis>

Methanogens growing on C-1 substrates synthesize 2-carbon acetyl groups in the form of acetyl-CoA for carbon assimilation using the multienzyme complex acetyl-CoA decarbonylase/synthase (ACDS) which contains five different subunits encoded within an operon. In species growing on acetate ACDS also functions to cleave the acetate C-C bond for energy production by methanogenesis. A number of species of Methanosarcina that are capable of growth on either C-1 compounds or acetate contain two separate ACDS operons, and questions have been raised about whether or not these operons play separate roles in acetate synthesis and cleavage. Methanosarcina thermophila genomic DNA was analyzed for the presence of two ACDS operons by PCR amplifications with different primer pairs, restriction enzyme analyses, DNA sequencing and Southern blot analyses. A single ACDS operon was identified and characterized, with no evidence for more than one. MALDI mass spectrometric analyses were carried out on ACDS preparations from methanol- and acetate-grown cells. Peptide fragmentation patterns showed that the same ACDS subunits were present regardless of growth conditions. The evidence indicates that a single form of ACDS is used both for acetate cleavage during growth on acetate and for acetate synthesis during growth on C-1 substrates. Electronic Supplementary Material  Supplementary material is available for this article at

---