浙江长兴志留纪真盔甲鱼类新材料及真盔甲鱼目系统发育关系的讨论

对浙江长兴地区志留纪真盔甲鱼类的新材料进行了研究。形态学研究结果表明 ,雷曼煤山鱼 (Meishanaspislehmani)一属种成立 ,并非浙江中华盔甲鱼 (Sinogaleaspiszhejiangensis)的同物异名。在此基础上 ,运用分支系统学的原理 ,对真盔甲鱼目的系统发育关系进行了探讨 ,分析结果表明 ,中华盔甲鱼属现有的 3个种并未组成一个单系类群 ,而是一个并系类群。浙江中华盔甲鱼不能归到中华盔甲鱼属 ,建议另立一新属。     

盔甲鱼亚纲(无颌类)的系统发育关系

基于对53个形态学特征的讨论,首次开展了无颌类儒甲鱼亚纲的简约性分析,获得了3 个最简约的分支图,其步长为126,一致性指数为0．508,保留指数为0．801。在此基础上,修订了盔甲鱼亚纲的分类。研究结果表明,志留纪兰多维列世至温洛克世的汉阳鱼类、修水鱼类和大庸鱼类属于盔甲鱼亚纲的基干类群。在其余盔甲鱼类中,识别出3个大的单系类群, 分别是真盔甲鱼目、多鳃鱼目和华南鱼目。在盔甲鱼亚纲中,头甲背窗的起源至少发生了两次,一次在多鳃鱼目支系中,另一次在华南鱼目支系中。基于背窗特征而建立的大窗鱼类并不是一个单系类群。盔甲鱼类的年代分布指示该类群的两次辐射演化,分别是兰多维列世特列奇期基干盔甲鱼类和真盔甲鱼目的辐射演化,和早泥盆世洛霍考夫期多鳃鱼目和华南鱼目的辐射演化。     

记真盔甲鱼类两新属——兼论真盔甲鱼类系统发育关系

本文记述了早泥盆世真盔甲鱼类两新属:憨鱼属(Nochelaspis)和翼角鱼属(Pterogonaspis).真盔甲鱼类是盔甲鱼类的一个单系类群,现有七属十二种,文中运用分支系统学原理对其系统发育关系进行了初步探讨.     

记一新的无颌类化石兼论多鳃鱼类的分类地位

本文记述了云南宜良早泥盆世一新的无颌类化石,高棘四营鱼,新属、新种 (Siyingiu altuspinosa gen.et sp.nov)。在讨论中主要涉及鼻垂体凹的构造和多鳃鱼类的分类地位。笔者认为,多鳃鱼类和盔甲鱼类的鼻垂体孔位于鼻垂体凹的软骨成分中,它没有吸水的功能,只具感觉的功能。多鳃鱼目不应置于鳍甲鱼纲,而应放在头甲鱼纲的盔甲鱼亚纲中。在盔甲鱼亚纲中,南盘鱼不是接近于盔甲鱼目而是接近于多鳃鱼目。     

基于16S rDNA部分序列探讨中国近海30种石斑鱼类的分子系统进化关系

石斑鱼因其种类繁多、分布广泛及缺乏显著的形体特征,使其系统分类的研究颇为困难。为探讨中国近海石斑鱼类的系统进化关系,通过PCR扩增获得了石斑鱼亚科(Epinephelinae)6属30个种类的线粒体16SrDNA基因片段序列。采用多个生物软件对序列变异和碱基组成进行分析,计算了Kimura2parameter遗传距离、转换/颠换比等遗传信息指数,并结合GenBank石斑鱼属的同源序列,以多纹长尾(Pronotogrammusmultifasciatus)和皮氏叫姑鱼(Johniusbelengerii)为外群构建NJ、MP和ML系统树。根据所得分子依据并结合形态学特征,推论如下:1)在本研究的30种石斑鱼中,鳃棘鲈属(Plectropomus)最先分化,并呈明显单系性;九棘鲈属(Cephalopholis)是一个单系群,并且较石斑鱼属(Epinephelus)原始;侧牙鲈属(Variola)的进化地位介于鳃棘鲈属与九棘鲈属之间;2)宽额鲈(Promicropslanceolatus)可以归入石斑鱼属,而驼背鲈(Cromileptesaltivelis)也与石斑鱼属有很近的亲缘关系,甚至可能是石斑鱼属内的特化类群;3)石斑鱼属内部存在两个平行进化的姐妹分支,分支内部的种类组成与地理分布无关,暗示了石斑鱼属早期的分化模式。     

中国棘茄鱼属(Halieutaea)的研究(Oncocephalidae)

棘茄鱼属种类虽不多,但分布较广,一般栖息于较深海域。我国经过几年来的鱼类区系调查,现已发现有三种,经比较研究后,其中一种Halieutaea fumosa Alcock为国内新纪录,一种被认为是新种,命名为中华棘茄鱼Halieutaea sinica sp.nov.,分述如下。 棘茄鱼属Halieutaea Cuvier et Valendennes Halieutaea Cuvier et Valenciennes, 1837, Hist. Nat. Poiss. 12:455 (Lophius stellata Vahl). 体平扁而宽,头部近呈圆形。口大,前位,近呈水平。颌部及咽部具牙,犁骨与腭骨部无牙。前额部隆起形成吻触手(illicium)隐伏的凹窝。鳃孔较小,位于体背方。鳃弓五对。鳃2(1/2)个,第一对鳃弓无鳃丝。鳃盖条5,最外一条分为二支。体上无鳞,被以棘     

S7核糖体蛋白基因序列变异与(鱼丹)亚科鱼类的单系性研究

使用分子生物学的方法对Dan亚科鱼类的单系性进行了探讨。通过PCR方法,获得了13种鲤科鱼类S7核糖体蛋白基因第1内含子序列,其中包括6种Dan亚科鱼类。使用MEGA软件中的Neighbor-Joining法和Most-Parsimony法分别构建分支系统图。研究结果显示目前所确认的Dan亚科鱼类实际上没有形成单系类群。其中Dan属、波鱼属和低线Lie属位于系统树基部,显示出原始性,而由细鲫属、马口鱼属和Lie属构成的类群相对于Dan亚科中的原始种类起源较晚,可能和较晚起源的东亚鲤科类群之间有更为密切的关系。     

基于细胞色素b基因序列的鲤科鱼类系统发育研究(鱼纲: 鲤形目)

鲤科是鱼类最大的科, 在中国淡水鱼类组成中鲤科鱼类的成分占一半以上. 鲤科鱼类的演化过程代表了东亚淡水鱼类的整体演化过程. 为探讨东亚鲤科鱼类系统发育关系, 共分析了包括18种新测序列在内的54种鲤科鱼类细胞色素b基因的全序列. 分析的物种涵盖了鲤科鱼类的12个亚科并对问题较多的亚科(Danioninae)和雅罗鱼亚科(Leuciscinae)进行了广泛的采样. 系统发育树的建立使用了多种方法, 包括邻接法、最大简约法和最大似然法. 亚口鱼科(Catostomidae)的胭脂鱼(Myxocyprinus asiaticus)被指定为外类群, 3种方法所得结果非常相似, 并支持一些亚科的单系性, 如鲌亚科(Cultrinae)、鯝亚科(Xenocyprinae)、鮈亚科(Gobioninae)(包括鳅鮀亚科Gobiobotinae). 从分子水平上证明亚科不是一个单系类群, 雅罗鱼亚科被分为两个互不相关的类群; 东亚雅罗鱼群与鲌亚科和鯝亚科形成一单系类群; 而欧洲、西伯利亚、北美的雅罗鱼形成另一个单系群. Howes所定义的鲤亚科在NJ树和ML树中得到有力的支持并位于系统树的基部. 高体鳑鲏(Rhodeus sericeus)代表的鳑鲏亚科的系统位置没有得到解决. 显示鲤科鱼类可分为3个大的类群并与其3个进化阶段相对应: 老第三纪类群包含亚科的东南亚种类和Howes的鲤亚科; 北方冷水性类群包含北方雅罗鱼、鮈亚科和鳑鲏; 东亚类群包含鲌亚科、鯝亚科、雅罗鱼东亚种类和亚科东亚种类. 老第三纪类群代表鲤科鱼类的原始阶段, 北方冷水性类群对应于鲤科鱼类对全球变冷的反应, 而东亚类群则显示青藏高原急剧隆升后, 在东亚季风气候条件下鲤科鱼类的大量分化.     

云南罗平中三叠世意外裸鱼的再研究

意外裸鱼(Gymnoichthys inopinatus)于2010年由Tintori等首次记述并归入基干新鳍鱼类。依据在云南省曲靖地区罗平县大凹子村中三叠世关岭组二段发现的新材料,对意外裸鱼进行了补充描述,并重新讨论了其系统发育关系。在意外裸鱼的新标本上,可见其续骨前端很可能与关节骨相关节,并有确切无疑的单一辅上颌骨,表明意外裸鱼应为鲱亚部(Halecomorphi)鱼类。此外,意外裸鱼的体表无鳞、椎体未骨化、髓棘和髓弓的结构和排列方式以及牙齿和尾脉棘的形状都与金尾鱼超科鱼类(caturoids)一致。系统发育分析结果表明意外裸鱼属于金尾鱼超科的基干类群。之前金尾鱼类主要见于欧洲和北美的侏罗系,现在公认的金尾鱼超科鱼类主要包括Liodesmidae中的Liodesmus属和金尾鱼科(Caturidae)中的Caturus和Amblysemius两属。意外裸鱼的发现不仅使金尾鱼类的出现提前了40Ma,而且填补了我国相关材料的空缺。     

中国鱼类新纪录科——法老鱼科及其一新纪录种记述(仙女鱼目)

法老鱼科(Anotopteridae)物种是一类凶猛的肉食性鱼类,主要分布在北太平洋、北大西洋和南冰洋中高纬度的寒冷海区,共有1属3种,以往在中国海域没有记录。我们在整理20世纪80年代初采自中国南海的馆藏鱼类标本时,发现了该科1种,即尼氏法老鱼(Anotopterus nikparini Kukuev)。其主要特征为,体甚柔软而细长,近圆筒形。口裂大,上下颌延长,上颌具1行短齿;腭骨有1行镰刀状的大型齿;下颌有1行扁薄的大齿。鳃裂甚宽,鳃膜不与颊部相连;鳃耙退化。鳃盖骨扁薄而柔软。体表无鳞。背鳍缺失,脂鳍发达。各鳍无棘,臀鳍15,胸鳍14,腹鳍11。侧线完全,有侧线孔85。脊椎骨80。法老鱼科、法老鱼属(Anotopterus)和尼氏法老鱼是中国鱼类的新纪录科、新纪录属和新纪录种。标本保存于上海海洋大学鱼类标本馆。     

Preparation of hair for measurement of elements by inductively coupled plasma-mass spectrometry (ICP-MS)

The preparation of hair for the determination of elements is a critical component of the analysis procedure. Open-beaker, closedvessel microwave, and flowthrough microwave digestion are methods that have been used for sample preparation and are discussed. A new digestion method for use with inductively coupled plasma-mass spectrometry (ICP-MS) has been developed. The method uses 0.2 g of hair and 3 mL of concentrated nitric acid in an atmospheric pressurelow-temperature microwave digestion (APLTMD) system. This preparation method is useful in handling a large numbers of samples per day and may be adapted to hair sample weights ranging from 0.08 to 0.3 g. After digestion, samples are analyzed by ICP-MS to determine the concentration of Li, Be, B, Na, Mg, Al, P, S, K, Ca, Ti, V, Cr, Mn, Fe, Co, Ni, Cu, Zn, Ge, As, Se, Rb, Sr, Zr, Mo, Pd, Ag, Cd, Sn, Sb, I, Cs, Ba, Pt, Au, Hg, Tl, Pb, Bi, Th, and U. Benefits of the APLTMD include reduced contamination and sample handling, and increased precision, reliability, and sample throughput.     

Frequency of cyanogenesis in tropical rainforests of far north Queensland, Australia

BACKGROUND AND AIMS: Plant cyanogenesis is the release of toxic cyanide from endogenous cyanide-containing compounds, typically cyanogenic glycosides. Despite a large body of phytochemical, taxonomic and ecological work on cyanogenic species, little is known of their frequency in natural plant communities. This study aimed to investigate the frequency of cyanogenesis in Australian tropical rainforests. Secondary aims were to quantify the cyanogenic glycoside content of tissues, to investigate intra-plant and intra-population variation in cyanogenic glycoside concentration and to appraise the potential chemotaxonomic significance of any findings in relation to the distribution of cyanogenesis in related taxa. METHODS: All species in six 200 m(2) plots at each of five sites across lowland, upland and highland tropical rainforest were screened for cyanogenesis using Feigl-Anger indicator papers. The concentrations of cyanogenic glycosides were accurately determined for all cyanogenic individuals. KEY RESULTS: Over 400 species from 87 plant families were screened. Overall, 18 species (4.5 %) were cyanogenic, accounting for 7.3 % of total stem basal area. Cyanogenesis has not previously been reported for 17 of the 18 species, 13 of which are endemic to Australia. Several species belong to plant families or orders in which cyanogenesis has been little reported, if at all (e.g. Elaeocarpaceae, Myrsinaceae, Araliaceae and Lamiaceae). A number of species contained concentrations of cyanogenic glycosides among the highest ever reported for mature leaves-up to 5.2 mg CN g(-1) d. wt, for example, in leaves of Elaeocarpus sericopetalus. There was significant variation in cyanogenic glycoside concentration within individuals; young leaves and reproductive tissues typically had higher cyanogen content. In addition, there was substantial variation in cyanogenic glycoside content within populations of single species. CONCLUSIONS: This study expands the limited knowledge of the frequency of cyanogenesis in natural plant communities, includes novel reports of cyanogenesis among a range of taxa and characterizes patterns in intra-plant and intra-population variation of cyanogensis.     

外泌体在白血病中的重要调控作用

目前,白血病复发是患者死亡的主要原因之一。肿瘤细胞和微环境的相互作用,以及隐匿在骨髓中的肿瘤干细胞,促进了白血病的复发和向淋巴组织的转移,因此白血病的治疗、转移和复发问题受到广泛关注。外泌体是由绝大多数细胞分泌的双层脂质膜囊泡,可以调控细胞间的交流和信息传递。在白血病细胞、基质细胞和内皮细胞之间的相互联系中都涉及到外泌体,白血病细胞来源的外泌体存在于白血病患者的血浆中,能把其携带的白血病相关抗原及微小RNA呈递给靶细胞,促进白血病肿瘤细胞的增殖,有助于肿瘤细胞实现免疫逃避,保护白血病细胞抵抗化疗药物导致的细胞毒性作用,促进血管生成及肿瘤细胞的迁移。因此,外泌体与白血病的转移、治疗及预后密切相关,可以用来检测和监测白血病的进展。本文综述了外泌体的来源、形成与分泌机制,以及外泌体在白血病发生前、发展中、预后和免疫治疗中所扮演的重要角色。     

日本北海道虻类雌性外生殖器形态(双翅目：虻科)(英文)

【目的】利用日本北海道虻类评估和验证外生殖器在分类学上的意义。【方法】将虻类成虫标本浸渍在生理盐水中并置于双目显微镜下通过针和镊子在培养皿中进行解剖并绘图,观察第9背板、第10背板、尾叶、第8腹板、受精囊、受精囊管及生殖叉器的形态特征。【结果】在日本北海道共记录了虻科(Tabanidae) 3亚科7属38种。我们观察并描述了3亚科其中的6属24种的雌性外生殖器的主要特征。亚科之间存在明显差异;然而在一般情况下属之间很难建立一种方法来确定共同点;种之间只有在斑虻属Chrysops中有相似之处,其他属中则比较多样化。因此,亚科鉴定根据第9背板、第8腹板及受精囊足以进行区分,属及种鉴定需要结合第9背板、第10背板、尾叶、第8腹板、受精囊、受精囊管及生殖叉器各自的特征组合在一起才能区分开来。我们也制作了虻类外生殖器的检索表。【结论】和许多其他昆虫一样,外生殖器是虻科的重要分类特征,对于促进分类学和系统学的发展具有重要意义。本研究首次对分布在日本北海道的虻科雌性外生殖器进行了系统研究。     

Fine Structure of Sperm of Ekphymatodera thomasoni (Heteroderinae,Nemata)

Fine structure of developing sperm of the monospecific genus, Ekphymatodera, was compared with other Heteroderinae as part of a study to recognize diversity and phylogenetically informative characters within the subfamily. Sperm of Ekphymatodera originate from germ cells connected to a central rachis, a character which is shared with Globodera, but not with other Heteoderinae. In Ekphymatodera, and cyst-forming genera, a layer of cortical microtubules lies just beneath the surface of the plasma membrane. Sperm of Ekphymatodera are unique among Heteroderinae examined by the presence of spiral surface elevations on the filopodia, a character that may prove to be a synapomorphy for Sarisoderini. Fibrous bodies are abundant in spermatids; however, they do not persist in sperm of Ekphymatodera as they do in Meloidodera and Verutus. The male gonad of Ekphymatodera is lined by epithelial cells, which are greatly enlarged near the ejaculatory canal. These enlarged cells contain vesicles with concentric lamellar inclusions, not observed in other genera of the subfamily. Sperm of Heteroderinae are rich in diversity, and examination of additional representative species may indicate new phylogenetically informative characters.     

A phylogenetic analysis of 100+ genera and 50+ families of euasterids based on morphological and molecular data with notes on possible higher level morphological synapomorphies

 A data matrix of 143 morphological and chemical characters for 142 genera of euasterids according to the APG system was compiled and complemented with rbcL and ndhF sequences for most of the genera. The data were subjected to parsimony analysis and support was assessed by bootstrapping. Strict consensus trees from analyses of morphology alone and morphology + rbcL + ndhF are presented. The morphological data recover several groups supported by molecular data but at the level of orders and above relationships are only superficially in agreement with molecular studies. The analyses provide support for monophyly of Gentianales, Aquifoliales, Apiales, Asterales, and Dipsacales. All data indicate that Adoxaceae are closely related to Dipsacales and hence they should be included in that order. The trees were used to assess some possible morphological synapomorphies for euasterids I and II and for the orders of the APG system. Euasterids I are generally characterised by opposite leaves, entire leaf margins, hypogynous flowers, “early sympetaly” with a ring-shaped corolla primordium, fusion of stamen filaments with the corolla tube, and capsular fruits. Euasterids II often have alternate leaves, serrate-dentate leaf margins, epigynous flowers, “late sympetaly” with distinct petal primordia, free stamen filaments, and indehiscent fruits. It is unclear which of these characters represent synapomorphies and symplesiomorphies for the two groups, respectively, and there are numerous expections to be interpreted as reversals and parallelisms. Received August 28, 2000 Accepted August 7, 2001     

Ecological importance of sedges: a survey of the Australasian Cyperaceae genus Lepidosperma

Background

Sedges (Cyperaceae) form an important ecological component of many ecosystems around the world. Sword and rapier sedges (genus Lepidosperma) are common and widespread components of the southern Australian and New Zealand floras, also occurring in New Caledonia, West Papua, Borneo, Malaysia and southern China. Sedge ecology is seldom studied and no comprehensive review of sedge ecology exists. Lepidosperma is unusual in the Cyperaceae with the majority of species occurring in dryland habitats.

Scope

Extensive review of ecological literature and field observations shows Lepidosperma species to be important components of many ecosystems, often dominating understorey and sedge-rich communities. For the first time, a detailed ecological review of a Cyperaceae genus is presented.

Conclusions Lepidosperma

species are long-lived perennials with significant abundance and persistence in the landscape. Speciation patterns in the genus are of considerable interest due to complex biogeographical patterns and a high degree of habitat specificity. Potential benefits exist for medicinal products identified from several Lepidosperma species. Over 178 organisms, including 26 mammals, 42 birds, six reptiles, five amphibians, eight arachnids, 75 insects, three crustaceans and 13 fungi, are found to be dependent on, or making use of, Lepidosperma species. A significant relationship exists between Lepidosperma species and the moth genus Elachista. Implications for the conservation and ecology of both sedges and associated species are discussed.     

Literature based species occurrence data of birds of northeast India

The northeast region of India is one of the world's most significant biodiversity hotspots. One of the richest bird areas in India, it is an important route for migratory birds and home to many endemic bird species. This paper describes a literature-based dataset of species occurrences of birds of northeast India. The occurrence records documented in the dataset are distributed across eleven states of India, viz.: Arunachal Pradesh, Assam, Bihar, Manipur, Meghalaya, Mizoram, Nagaland, Sikkim, Tripura, Uttar Pradesh and West Bengal. The geospatial scope of the dataset represents 24 to 29 degree North latitude and 78 to 94 degree East longitude, and it comprises over 2400 occurrence records. These records have been collated from scholarly literature published between1915 and 2008, especially from the Journal of the Bombay Natural History Society (JBNHS). The temporal scale of the dataset represents bird observations recorded between 1909 and 2007. The dataset has been developed by employing MS Excel. The key elements in the database are scientific name, taxonomic classification, temporal and geospatial details including geo-coordinate precision, data collector, basis of record and primary source of the data record. The temporal and geospatial quality of more than 50% of the data records has been enhanced retrospectively. Where possible, data records are annotated with geospatial coordinate precision to the nearest minute. This dataset is being constantly updated with the addition of new data records, and quality enhancement of documented occurrences. The dataset can be used in species distribution and niche modeling studies. It is planned to expand the scope of the dataset to collate bird species occurrences across the Indian peninsula.     

Characterization of citrus pectin samples extracted under different conditions: influence of acid type and pH of extraction

Background and Aims

Pectin is a complex macromolecule, the fine structure of which is influenced by many factors. It is used as a gelling, thickening and emulsifying agent in a wide range of applications, from food to pharmaceutical products. Current industrial pectin extraction processes are based on fruit peel, a waste product from the juicing industry, in which thousands of tons of citrus are processed worldwide every year. This study examines how pectin components vary in relation to the plant source (orange, lemon, lime, grapefruit) and considers the influence of extraction conditions on the chemical and macromolecular characteristics of pectin samples.

Methods

Citrus peel (orange, lemon, lime and grapefruit) from a commercial supplier was used as raw material. Pectin samples were obtained on a bulk plant scale (kilograms; harsh nitric acid, mild nitric acid and harsh oxalic acid extraction) and on a laboratory scale (grams; mild oxalic acid extraction). Pectin composition (acidic and neutral sugars) and physicochemical properties (molar mass and intrinsic viscosity) were determined.

Key Results

Oxalic acid extraction allowed the recovery of pectin samples of high molecular weight. Mild oxalic acid-extracted pectins were rich in long homogalacturonan stretches and contained rhamnogalacturonan I stretches with conserved side chains. Nitric acid-extracted pectins exhibited lower molecular weights and contained rhamnogalacturonan I stretches encompassing few and/or short side chains. Grapefruit pectin was found to have short side chains compared with orange, lime and lemon. Orange and grapefruit pectin samples were both particularly rich in rhamnogalacturonan I backbones.

Conclusions

Structural, and hence macromolecular, variations within the different citrus pectin samples were mainly related to their rhamnogalacturonan I contents and integrity, and, to a lesser extent, to the length of their homogalacturonan domains.     

Micromanipulation of Gene Expression in the Adult Zebrafish Brain Using Cerebroventricular Microinjection of Morpholino Oligonucleotides

Manipulation of gene expression in tissues is required to perform functional studies. In this paper, we demonstrate the cerebroventricular microinjection (CVMI) technique as a means to modulate gene expression in the adult zebrafish brain. By using CVMI, substances can be administered into the cerebroventricular fluid and be thoroughly distributed along the rostrocaudal axis of the brain. We particularly focus on the use of antisense morpholino oligonucleotides, which are potent tools for knocking down gene expression in vivo. In our method, when applied, morpholino molecules are taken up by the cells lining the ventricular surface. These cells include the radial glial cells, which act as neurogenic progenitors. Therefore, knocking down gene expression in the radial glial cells is of utmost importance to analyze the widespread neurogenesis response in zebrafish, and also would provide insight into how vertebrates could sustain adult neurogenesis response. Such an understanding would also help the efforts for clinical applications in human neurodegenerative disorders and central nervous system regeneration. Thus, we present the cerebroventricular microinjection method as a quick and efficient way to alter gene expression and neurogenesis response in the adult zebrafish forebrain. We also provide troubleshooting tips and other useful information on how to carry out the CVMI procedure.