Next issue (December 2007): Energy Production

Edited by Dr. Stefan Nordhoff, Marl, Germany Highlight articles: – Sustainable production of biofuels – Coupled production in biorefineries – Biodegradation of fuel oil hydrocarbons – Biobutanol: an attractive biofuel – Sustainable biobased energy, fuels and materials – Renewable resources in the chemical industry – breaking away from oil? – Using waste from olive oil industry for fuel production – Economic impacts of bio-refinery and resource cascading systems – Agricultural raw materials – energy or food? ... and much more: Read the next issue of BTJ!     

BiotecVisions 2010, March–April

News: Attraction of adipose tissue – Swine flu vaccine from insectcells – MicroRNA in multiple sclerosis – Proteomic detection of adenoma – Systematic engineering for arsenic removal – Bacterial cellulose to make blood vessels – The recipe for primordial soup: acid or bitter, hot or warm – Increased O₂ in hollow fiber bioreactors – Eye stem cells to treat immune disease – Super-strong collagen – Designing functional metalloproteins – Higher oil content in tobacco leaves – Alternative metabolic routes – New compass point blot helps find hTERT factors – Extracellular signals – doomed cells in the bacterial community Journal Highlights : Oils and fats for the chemical industry – Molecular Nutrition Reviews New from the Encyclopedia of Life Sciences: EM analysis of protein structure Opinion: Ethics body asks: How green are new biofuels? Most Cited in 2009 Tips and tricks: Storing bacterial strains Award: Garden Award 2010 Funding News: Euro 400.000 for new malaria drug – Cardiovascular biomarker research – Support to cholera surveillance Industry News: Human genome sequencing projects – Fighting Huntington's disease – Multiple sclerosis collaboration Book Highlights: AIDS and tuberculosis – Perinatal stem cells Test your knowledge: Do you recognize this? Meeting Preview: The 9th Annual Biological Production Forum 2010     

Biotec Visions 2010, January–February

News: Plastics from E. coli – Looking again (carefully) at thalidomide – Don't kiss the chimps – Imaging microbial interactions – Probiotics prevent intestinal diseases – Drug resistance in cancer stem cell populations – Triple tag technique turns up tight and loose complexes – It pays to have an immune mother – DNA hybridization mechanisms – Chip-based breast tissue analysis – Nutrient support for engineered tissue – Nano-spheres support axon recovery – Bop-a-hepcidin Environmental News: Blueprint for molecular basis of global warming – Environmental biosensors – Predicting the fate of underground carbon Journal Highlights: Focus on Biochips – Neglected tropical diseases – New online portal Opinion: Outwitting evolution: We should pay as much for strategy as technology Most Read Industry News: Life Sciences Industry – Collaboration on forensics – New center for Systems Biology Tips and tricks: Melting your DNA Special Broadcast: Watch 50 years of B&B on YouTube Writing Tips: Get the figures right – Figure or Table? – Figure legend Algae and plants in brief: Plasmid-based methods in mosses – Antibody production in algal chloroplasts – Polysaccharides from foam cultures Test your knowledge: Do you recognize this? WIREs Author Spotlight: Toxicity of Nanomaterials     

Next issue (September 2007): Talking Biotech with the Public – including a special FREE podcast!

Edited by Dr. Kristina Sinemus, Darmstadt, Germany Highlight articles: – Public perceptions of biotechnology – Future societal issues in industrial biotechnology – The co-existence debate in Europe – The Co-Extra website – Bioethics, GM crops and intellectual property – Patent scenarios for the future – Experiences in implementation of biosafety systems – Transparent communication strategy on GMOs – Options for a rational dialogue on the acceptance of biotechnology – Attitudes that predict acceptance of genetic engineering in Australia – Biotechnology: the language of multiple views in Maori communities – Science – or not? The scientific status of biotechnology ... and much more: Read the next issue of BTJ!     

Daily rhythms of lipid metabolic gene expression in zebra fish liver: Response to light/dark and feeding cycles

Despite numerous studies about fish nutrition and lipid metabolism, very little is known about the daily rhythm expression of lipogenesis and lipolysis genes. This research aimed to investigate the existence of daily rhythm expressions of the genes involved in lipid metabolism and their synchronization to different light/dark (LD) and feeding cycles in zebra fish liver. For this purpose, three groups of zebra fish were submitted to a 12:12?h LD cycle. A single daily meal was provided to each group at various times: in the middle of the light phase (ML); in the middle of the dark phase (MD); at random times. After 20 days of acclimation to these experimental conditions, liver samples were collected every 4?h in one 24-h cycle. The results revealed that most genes displayed a significant daily rhythm with an acrophase of expression in the dark phase. The acrophase of lipolytic genes (lipoprotein lipase – lpl, peroxisome proliferator-activated receptor – pparα and hydroxyacil CoA dehydrogenase – hadh) was displayed between ZT 02:17?h and ZT 18:31?h. That of lipogenic genes (leptin-a – lepa, peroxisome proliferator-activated receptor – pparγ, liver X receptor – lxr, insulin-like growth factor – igf1, sterol regulatory element-binding protein – srebp and fatty acid synthase – fas) was displayed between ZT 15:25?h and 20:06?h (dark phase). Feeding time barely influenced daily expression rhythms, except for lxr in the MD group, whose acrophase shifted by about 14?h compared with the ML group (ZT 04:31?h versus ZT 18:29?h, respectively). These results evidence a strong synchronization to the LD cycle, but not to feeding time, and most genes showed a nocturnal acrophase. These findings highlight the importance of considering light and feeding time to optimize lipid metabolism and feeding protocols in fish farming.     

Biotech News

Awards: Smoluchowski Award for Suwan Jayasinghe – EMBO recognizes talented young group leaders in Europe New on the market: Full automation from library samples to assay plates with “Calli-L” – New bottles for laboratory use From our sister journals: – Estrogen activity biosensor – Two-photon polymerization for tissue scaffolds – Algae, do not shear this time! – Plant based Plasmodium vaccine – The Global HIV Vaccine Research Cryorepository – Bioreactor for tissue engineered arteries – Nano-magnetic bacteria separation – Predictive biodegradation models – Most read in BTJ: Gene targeting from laboratory to livestock BioEssays highlights: What doesn't kill me... – Time for adaptive radiation to move on? – Looking again (carefully) at thalidomide     

Radiofrequency electromagnetic radiation exposure inside the metro tube infrastructure in Warszawa

Abstract

Antennas from various wireless communications systems [e.g. mobile phones base transceiver stations (BTS) and handsets used by passengers, public Internet access, staff radiophone transmitters used between engine-drivers and traffic operators] emitting radiofrequency electromagnetic radiation (RF-EMR) are used inside underground metro public transportation. Frequency-selective exposimetric investigations of RF-EMR exposure inside the metro infrastructure in Warsaw (inside metro cars passing between stations and on platforms) were performed. The statistical parameters of exposure to the E-field were analyzed for each frequency range and for a total value (representing the wide-band result of measurements of complex exposure). The recorded exposimetric profiles showed the dominant RF-EMR sources: handsets and BTS of mobile communication systems (GSM 900 and UMTS 2100) and local wireless Internet access (WiFi 2G). Investigations showed that the GSM 900 system is the dominant source of exposure – BTS (incessantly active) on platforms, and handsets – used by passengers present nearby during the tube drive. The recorded E-field varies between sources (for BTS were: medians – 0.22?V/m and 75th percentile – 0.37?V/m; and for handsets: medians – 0.28?V/m and 75th percentile – 0.47?V/m). Maximum levels (peaks) of exposure recorded from mobile handsets exceeded 10?V/m (upper limit of used exposimeters). Broadband measurements of E-field, including the dominant signal emitted by staff radiophones (151?MHz), showed that the level of this exposure of engine-drivers does not exceed 2.5?V/m.     

BiotecVisions 2010, May–June

News: Ethanol biofuels from orange peels – Targeting leukaemia's gene addiction – Pea-derived solar cells – HIV is a kick in the head – Nano-scale DNA reader – Membrane in black – Cheese improves the immune response of elderly – Synthetic proteins built from standard parts – Therapeutic proteins produced in algae – Biosensor detects 100 mycoplasma cells – Protecting maggots against bacteria – Advanced biofuels from microbes – Fluorescent bacterial uptake – Two disparate stem cell states – Brachypodium genome sequenced Encyclopedia of Life Sciences: Nuclear transfer for cell lines WIREs Nanomedicine and Nanobiotechnology: Nanoparticle detection of respiratory infection Journal Highlights: Biocatalysis – Synthetic Biology In the news: Nanobiotech to detect cancer Most Read Industry News: Biomarker assays for personalized medicine – Bioplastic industry defies economic crisis – SDS-PAGE monitoring of mAB Awards: BTJ Editors elected members of the US National Academy of Engineering (NAE) Meeting highlight Writing tips: Figure preparation made simple – Some useful tutorials on the web Book Highlights: Molecular Biotechnology – Bacterial Signaling – Yeast Test your knowledge: Do you recognize this? WIREs Authors Spotlight: Nanotechnology and orthopedics     

Design,synthesis and biological evaluation of novel pyrazolo-oxothiazolidine derivatives as antiproliferative agents against human lung cancer cell line A549

An efficient, one-pot multicomponent reaction of novel pyrazolo-oxothiazolidine derivatives was achieved by condensation of 1-(benzofuran-2-yl)-3-(substituted-arylprop-2-en-1-ones, thiosemicarbazide and dialkyl acetylenedicarboxylates under the optimized reaction conditions. Synthesised compounds were evaluated for their antiproliferative activity against A549 human lung cancer cell line. Among all the tested compounds, 4a (IC₅₀ – 0.930?μg/mL), 4e (IC₅₀ – 1.207?μg/mL), 4f (IC₅₀ – 0.808?μg/mL), 4g (IC₅₀ – 1.078?μg/mL), 4h (IC₅₀ – 0.967?μg/mL) and 4j (IC₅₀ – 2.445?μg/mL) showed promising activity compared with standard drug Sorafenib (IC₅₀ – 3.779?μg/mL). Molecular docking studies indicated that compound 4f had the greatest affinity for catalytic site of receptors EGFR (PDB ID code: 1?M17) and VEGFR2 (PDB ID code: 4AGD, 4ASD). These novel pyrazolo-oxothiazolidine derivatives can be promising therapeutic agents for A549 human lung cancer cell line.     

Special focus: Synthetic biology

Special focus: Synthetic biology What is synthetic biology? SynBERC – The Synthetic Biology Engineering Research Center Ars Synthetica iGEM – The International Genetically Engineered Machine competition Some synthetic biology companies Paper watch: Synthetic biology Building blocks for novel functions Knowledge-making distinctions in synthetic biology Scaffold design and manufacturing: From concept to clinic Peptidomimetics – a versatile route to biologically active compounds Metabolic engineering of E. coli E. coli needs safety valves Systems-level metabolic engineering Mammalian synthetic biology Chemical aspects of synthetic biology Synthesis of DNA fragments in yeast Synthetic biology and patentable subject matter Patenting artificial life? Metabolic effects of synthetic rewiring Engineering for biofuels Regulatory elements for synthetic biology Book highlight Systems Biology and Synthetic Biology     

Influence of resin cement thickness and temperature variation on mechanical behavior of dental ceramic fragment restoration

To evaluate the stress behavior of ceramic fragment restoration, varying the thickness of the cement layer and intraoral temperature variation. A solid model of a upper lateral incisor was obtained and a defect at enamel distal/incisal edge was restored with a ceramic fragment. Based on this initial model, 4 different models (M) were built: M1 – absence of cement layer (CL) (0?μm of thickness); M2 – CL with an uniform thickness of 50?μm; M3 – CL with 50?μm at the margin of ceramics and 100?μm in the inner area far from margins; M4 – CL with 50?μm at the margin of ceramics and 200?μm in the inner area far from margins. The environment temperature changed from 5?°C to 50?°C in 4 increments. The finite element analysis was performed. Increase the cement layer thickness generated higher stress levels on ceramic surface in all temperatures, as well as on cement interface. In general hot temperature was the worst scenario for ceramic fragments integrity, since tensile and compressive stress were more intense. The maximum principal stress on ceramic fragment was found 90?MPa for M4 at 50?°C, followed for M3 (87?Mpa). For CL, the peak of stress was found for M3 at 5?°C (47?MPa). Is it possible to conclude that thick resin cement layer contribute to higher stress concentration on ceramic fragment, and extremely hot temperatures increase the risk of structural failure, since both ceramic and \cl are exposed to higher compressive and tensile stresses.     

A comparison of native and non-urate Total Antioxidant Capacity of fasting plasma and saliva among middle-aged and older subjects

Objectives: As plasma and salivary total antioxidant capacity (TAC) is mainly contributed by uric acid (UA), the present study measures non-urate TAC (Nu-TAC). The aim of the study was to correlate plasma native TAC, Nu-TAC and UA with their salivary analogues, and compare the UA contribution in both body fluids using two different methods.

Methods: The study involved 55 middle-aged and older subjects (66.7?±?4.5 years). TAC was determined simultaneously with two methods (ferric reducing ability of plasma – FRAP, 2.2-diphenyl-1-picryl-hydrazyl – DPPH and countertypes for saliva – FRAS and DPPHS test), with and without UA (native TAC and Nu-TAC, respectively). Plasma UA and salivary UA (SUA) were assessed.

Results: Subjects with increased FRAP, DPPH and UA had higher FRAS, DPPHS and SUA, respectively (P?P?Discussion: Our findings suggest that saliva is a good predictor for native plasma TAC but not for Nu-TAC. UA level is comparably dominant in saliva and in plasma according to DPPH, but lower in plasma according to FRAP.     

CR3 (CD11b/CD18) activation of nasal neutrophils: a measure of upper airway endotoxin exposure

Inhaled endotoxin (lipopolysaccharide, LPS) initiates an inflammatory response and leads to the expression of CR3 (CD11b/CD18) receptors on polymorphonuclear leukocytes (PMNs). We determined if PMN activation in nasal lavage fluid (NLF) is a possible biomarker of occupational endotoxin exposure. Seven subjects exposed to endotoxin provided NLF samples that were split into three aliquots (negative control – 1?M nicotinamide; sham; positive control – 11 ηg of exogenous LPS) and PMN activation was measured using a chemiluminometer. Differences in mean PMN activation were apparent, negative control: 548?±?15.65 RLU 100 μl^?1; sham: 11469?±?2582 RLU 100 μl^?1; positive control: 42026?±?16659 RLU 100 μl (n?=?7; p <0.05). This technique shows promise as a diagnostic method for measuring upper airway LPS exposure.     

The long periodicity phase (LPP) controversy part I: The influence of a natural-like ratio of the CER[EOS] analogue [EOS]-br in a CER[NP]/[AP] based stratum corneum modelling system: A neutron diffraction study

This study used neutron diffraction to investigate a ceramide-[NP] C24/[AP] C24 /[EOS]-br C30/cholesterol/lignoceric acid (0.6: 0.3: 0.1: 0.7: 1) based stratum corneum modelling system. By adding specifically deuterated ceramides-[NP]-D₃, [AP]-D₃, and [EOS]-br-D₃, detailed information on the lamellar and the nanostructure of the system was obtained. For the short periodicity phase a natural-like lamellar repeat distance of 5.47?±?0.02?nm was observed, similar to the [NP]/[AP] base system without the [EOS]-br. Unlike in this system the ceramides here were slightly tilted, hinting towards a slightly less natural arrangement. Due to the deuteration it was possible to observe that the long ceramide chains were overlapping in the lamellar mid-plane. This is considered to be an important feature for the natural stratum corneum. Despite the presence of a ceramide [EOS] analogue – able to form a long phase arrangement – no distinct long periodicity phase was formed, despite a slightly higher than natural ω-acyl ceramide ratio of 10?mol%. The deuterated variant of this ceramide determined that the very long ceramide was integrated into the short periodicity phase, spanning multiple layers instead. The – compared to the base system – unchanged repeat distance highlights the stability of this structure. Furthermore, the localisation of the very long ceramide in the short periodicity phase indicates the possibility of a crosslinking effect and thus a multilayer stabilizing role for the ceramide [EOS]. It can be concluded, that additionally to the mere presence of ceramide-[EOS] more complex conditions have to be met in order to form this long phase. This has to be further investigated in the future.     

Diagnostic function of the neuroinflammatory biomarker YKL-40 in Alzheimer’s disease and other neurodegenerative diseases

Introduction: Neuroinflammation is a crucial mechanism in the pathophysiology of neurodegenerative diseases pathophysiology. Cerebrospinal fluid (CSF) YKL-40 – an indicator of microglial activation ? has recently been identified by proteomic studies as a candidate biomarker for Alzheimer’s disease (AD).

Areas covered: We review the impact of CSF YKL-40 as a pathophysiological biomarker for AD and other neurodegenerative diseases. CSF YKL-40 concentrations have been shown to predict progression from prodromal mild cognitive impairment to AD dementia. Moreover, a positive association between CSF YKL-40 and other biomarkers of neurodegeneration – particularly total tau protein ? has been reported during the asymptomatic preclinical stage of AD and other neurodegenerative diseases. Albeit preliminary, current data do not support an association between APOE-ε4 status and CSF YKL-40 concentrations. When interpreting the diagnostic/prognostic significance of CSF YKL-40 concentrations in neurodegenerative diseases, potential confounders – including age, metabolic and cardiovascular risk factors, diagnostic criteria for selecting cases/controls – need to be considered.

Expert opinion/commentary: CSF YKL-40 represents a pathophysiological biomarker reflecting immune/inflammatory mechanisms in neurodegenerative diseases, associated with tau protein pathology. Besides being associated with tau pathology, CSF YKL-40 adds to the growing array of biomarkers reflecting distinct molecular brain mechanisms potentially useful for stratifying individuals for biomarker-guided, targeted anti-inflammatory therapies emerging from precision medicine.     

Nematodes associated with date palm and their control measures

Date palm, Phoenix dactylifera L., is dioecious and can be artificially pollinated by man, and one-third of all the dates of the world are grown in Iraq. In Egypt, there are about 12?million date palm trees grown in 99,867?feddans (fed.?=?4200?m²). Productivity is 1352,954?million?tons with yield 111.7?kg/tree. Plant parasitic nematodes associated with date palm are Criconemoides spp., Helicotylenchus spp., Hemicriconemoides spp., Hemicycliophora spp., Hoplolaimus spp., Meloidogyne incognita, Meloidogyne arenaria, Meloidogyne javanica, Pratylenchus brachyurus, Pratylenchus jordanensis, Pratylenchus coffeae, Pratylenchus neglectus, Pratylenchus thornei, Trichodorus spp., Tylenchorhynchus goffarti, Tylenchorhynchus latus and Xiphinema spp.; Meloidogyne incognita-infected roots of susceptible cultivar favoured giant cell and galls formation. Date palm roots infected with Pratylenchus penetrans showed puncture of epidermal cells and disarrangement of cortical cells with large empty abnormal cavities. As control measures, it is advised to; 1 – plant immune or resistant cultivars against pathogenic nematodes, 2 – use oil cakes or poultry manure as organic amendments and a nematicide, carbofuran.These were tested and found effective in the control of Helicotylenchus multicinctus and P. penetrans, 3 – treat nematode-infested date palm seedlings with hot water at a suitable temperature for a given period before transplanting to open field, 4 – plant nematode -free date palm seedlings, 5 – soil solarisation and tillage before planting, 6 – weed control, 7 – intercrop with nematode-resistant horticultural crops and 8 – induce resistance in susceptible date palm cultivars against root knot nematode.     

Effect of refrigeration storage of nemathophagous fungi embedded in sodium alginate pellets on predatory activity against asinine gastrointestinal nematodes

ABSTRACT

The objective of this study was to evaluate the effectiveness of pelleted formulations of Duddingtonia flagrans and Monacrosporium thaumasium sodium alginate matrix stored for two and five years, by refrigeration of 2–8°C, on the predation of nematode infective larvae after passage of the gastrointestinal tract of asinines. Asinines were divided into seven groups, each group containing eight animals, in which each animal received a single dose of 100?g of pellets (containing 20?g of fungal mycelia) along with commercial feed to facilitate ingestion: GI – received D. flagrans pellets stored for five years; GII- received pellets of D. flagrans stored for two years; GIII – received newly produced D. flagrans pellets; GIV – received pellets of M. thaumasium stored for five years; GV – received pellets of M. thaumasium stored for two years; GVI – received pellets of newly-stocked M. thaumasium; and Control – received pellets without nematophagous fungi. It was observed that after passage of the pellets containing D. flangras (AC001) and M. thaumasium (NF34) by the gastrointestinal tract of the asinines, regardless of pellet storage time in assays A (Petri dishes) and B (coprocultures), there was a significant larval reduction (p?<?0.01) up to 72?h. It was concluded that the use of sodium alginate matrix pellets containing D. flagrans and M. thaumasium stored for two and five years were effective on the predation of infective nematode larvae after passage of the gastrointestinal tract from asinines.     

Nanoliposomes protect against AL amyloid light chain protein-induced endothelial injury

Context: A newly-recognized pathogenic mechanism underlying light chain amyloidosis (AL) involves endothelial dysfunction and cell injury caused by misfolded light chain proteins (LC). Nanoliposomes (NL) are artificial phospholipid vesicles that could attach to misfolded proteins and reduce tissue injury.

Objective: To test whether co-treatment with NL reduces LC-induced endothelial dysfunction and cell death.

Methods: Abdominal subcutaneous adipose arterioles from 14 non-AL subjects were cannulated; dilator response to acetylcholine and papaverine were measured at baseline and following 1-hour exposure to LC (20?µg/mL, 2 purified from AL subjects’ urine, 1 from human recombinant LC [AL-09])?±?NL (phosphatidylcholine/cholesterol/phosphatidic acid 70/25/5 molar ratio) or NL alone. Human aortic artery endothelial cells (HAEC) were exposed to Oregon Green-labeled LC?±?NL for 24 hours and intracellular LC and apoptosis (Hoechst stain) were measured. Circular dichroism spectroscopy was performed on AL-09 LC?±?NL to follow changes in secondary structure and protein thermal stability.

Results: LC caused impaired dilation to acetylcholine that was restored by NL (control – 94.0?±?1.8%, LC – 65.0?±?7.1%, LC?+?NL – 95.3?±?1.8%, p?≤?0.001 LC versus control or LC?+?NL). NL protection was inhibited by L-NG-nitroarginine methyl ester. NL increased the beta sheet structure of LC, reduced endothelial cell internalization of LC and protected against LC-induced endothelial cell death.

Conclusions: LC induced human adipose arteriole endothelial dysfunction and endothelial cell death, which were reversed by co-treatment with NL. This protection may partly be due to enhancing LC protein structure and reducing LC internalization. Nanoliposomes represent a promising new class of agents to ameliorate tissue injury from protein misfolding diseases such as AL.     

Effects of some volatile anesthetic agents on rat heart sarcolemma.

The effects of ether, chloroform and halothane on rat heart sarcolemmal ATP hydrolyzing and calcium binding activities were studied. Sarcolemmal Na⁺ ? K⁺ ATPase activity was inhibited by halothane (1.8 – 18 mM) and stimulated by ether (7.1 – 42.6 mM) and chloroform (7.5 – 45 mM). Higher concentrations of ether (56.8 – 71 mM) and chloroform (60 – 75 mM) depressed the Na⁺ ? K⁺ ATPase activity. Chloroform (7.5 – 75 mM) and halothane (1.8 – 18 mM) were found to decrease Mg²⁺ ATPase and Ca²⁺ ATPase activities, whereas e0her (42.6 – 71 mM) depressed only the Mg²⁺ ATPase activity. Sarcolemmal calcium binding was depressed by ether (42.6 – 71 mM), chloroform (45 – 75 mM) and halothane (10.8 – 18 mM). These results suggest that the anesthetic - induced cardiac depression may partly be due to decreased sarcolemmal activities.