The use of β-propiolactone for the sterilization of heat-labile materials

A short literature survey on chemical sterilization with -propiolactone is given. The auto-inactivatio 1 of this compound in aqueous solution appears to be one of its main advantages.Time-kill studies have been carried out with bacterial cells and spores, and with fungal spores. The compatibility of BPL with textiles and plastics was also studied to some extent. It is concluded that heat-sensitive materials can be sterilized with a 1.0% aqueous solution of BPL within one hour at room temperature. The compatibility of BPL with the materials studied does not appear to offer serious problems.     

On the correct use of ‘data’

Acknowledgement  Thanks are due to Drs. Paul Johnston (P.Johnston@ exeter.ac.uk) and E. William Beese (ebeese@t-online.de) for kindly providing dictionary definitions and for sharing their thoughts about the correct use of ‘data’.     

Syntheses of α-D-glucosyl-D-fructoses by use of a reversed hydrolysis activity of α-glucosidase

Summary -D-Glucosyl-D-fructoses were synthesized by use of a reversed hydrolysis activity of -glucosidase fromSaccharomyces sp. Although -D-glucosyl-(1–1)-D-fructose was synthesized predominantly by the incubation of D-glucose solution in the presence of -glucosidase (batch method reaction), -(1–4)-linked disaccharide was a major product in a procedure by use of an immobilized -glucosidase column and an activated carbon column (column method reaction).     

Potential therapeutic use of antibodies directed towards HuIFN-γ

IFN-γ is an important regulator of immune responses and inflammation. Studies in animal models of inflammation, autoimmunity, cancer, transplant rejection and delayed-type hypersensitivity have indicated that administration of antibodies against IFN-γ can prevent the occurrence of diseases or alleviate disease manifestations. Therefore, it is speculated that such antibodies may have therapeutical efficacy in human diseases. Since animal-derived antibodies are immunogenic in patients several strategies are being developed in order to reduce or abolish this human anti-mouse antibody (HAMA) response. In our laboratory, we have constructed a single-chain variable fragment (scFv) derived from a mouse antibody with neutralizing potential for human IFN-γ. A scFv consists of only variable domains tethered together by a flexible linker. The scFv was demonstrated to neutralize the antiviral activity of HuIFN-γin vitro and therefore might be considered as a candidate for human therapy.     

Regeneration of the progesterone 11α-hydroxylase of Rhizopus nigricans by the use of periodate

Summary The cell-free progesterone 11-hydroxylase enzyme of Rhizopus nigricans can be directly regenerated by periodate oxidation. This permits action of the enzyme over a period of hours with an activity similar to that in the presence of an NADPH generating system.     

Why do proteins use selenocysteine instead of cysteine?

Selenocysteine is present in a variety of proteins and catalyzes the oxidation of thiols to disulfides and the reduction of disulfides to thiols. Here, we compare the kinetic and thermodynamic properties of cysteine with its selenium-containing analogon, selenocysteine. Reactions of simple selenols at pH 7 are up to four orders of magnitude faster than their sulfur analogs, depending on reaction type. In redox-related proteins, the use of selenium instead of sulfur can be used to tune electrode, or redox, potentials. Selenocysteine could also have a protective effect in proteins because its one-electron oxidized product, the selanyl radical, is not oxidizing enough to modify or destroy proteins, whereas the cysteine-thiyl radical can do this very rapidly.     

The use of concept maps during knowledge elicitation in ontology development processes – the nutrigenomics use case

Background  

Incorporation of ontologies into annotations has enabled 'semantic integration' of complex data, making explicit the knowledge within a certain field. One of the major bottlenecks in developing bio-ontologies is the lack of a unified methodology. Different methodologies have been proposed for different scenarios, but there is no agreed-upon standard methodology for building ontologies. The involvement of geographically distributed domain experts, the need for domain experts to lead the design process, the application of the ontologies and the life cycles of bio-ontologies are amongst the features not considered by previously proposed methodologies.     

Does land use change influence predation of bird nests?

Worldwide, many areas of agricultural land which were once covered with native vegetation have been converted to tree plantations. Such landscape transformation can influence the dynamics of wildlife populations through, for example, altering rates of predation (e.g. predation of nests of birds). Nest predation can influence reproductive success and, in turn, may alter populations by affecting juvenile recruitment. We quantified predation of bird nests in woodland remnants surrounded by two types of land use, grazing farmland and exotic Radiata pine (Pinus radiata) plantation. We also examined differences in predation rates between artificial and natural nests. We found both artificial and natural nests were more susceptible to nest predation in woodland remnants surrounded by a pine plantation than in woodland remnants located within farmland. Our study suggests that higher levels of nest predation may reduce occupancy of woodland remnants by small‐bodied birds over time, including species of conservation concern. This may have been occurred as a result of the conversion of semi‐cleared grazing land to exotic pine plantation.     

The use of a rare codon specifically during development?

A range of circumstantial evidence suggests that in Streptomyces spp., genes required for vegetative growth do not contain the leucine codon TTA. Instead, the codon seems to be confined to a few genes necessary during differentiation, when the colonies begin to produce aerial hyphae and antibiotics. Thus, mutations in bldA, the structural gene for tRNATTALeu, do not retard vegetative growth, but they prevent normal aerial mycelium and antibiotic production. Most of the known TTA-containing genes specify regulatory or resistance proteins associated with antibiotic-production clusters. Possibly the ability to translate the UUA codons in mRNA from such genes is confined to late stages of colony development. Factors that might have contributed to the evolution of this unusual situation are discussed.     

The use of 1-O-sulfonyl-d-mannopyranose derivatives in β-d-mannopyranoside synthesis

Several 1-O-sulfonyl derivatives of d-mannopyranose having a nonparticipating benzyl ether group at C-2 and ester functions at C-6 and C-4 were synthesized from the corresponding d-mannopyranosyl chloride derivatives with silver sulfonates in acetonitrile. The reaction of 1-O-sulfonyl-d-mannopyranose compounds with methanol in various solvents at room temperature gave high yields of glycosides with low degrees of stercoselectivity. On the other hand, 1-O-suffonyl-d-mannopyranose derivatives having an acyl participating-group at O-2 and benzyl ethers at C-3, C-4, and C-6 gave high yields and high stereoselectivity of α-d-mannopyranosides with primary and secondary alcohols in several solvents. Model studies were carried out to determine the best combination of 2-O-acyl group, solvent, time, temperature, and 1-O-sufonyl group to give high yields with high stereoselectivity. The method has been used to prepare in good yields more complex glycosides, including perbenzylated methy 2-O-(α-d-mannopyranosyl)-α-d-mannopyranoside.     

How do we use language? Shared patterns in the frequency of word use across 17 world languages

We present data from 17 languages on the frequency with which a common set of words is used in everyday language. The languages are drawn from six language families representing 65 per cent of the world's 7000 languages. Our data were collected from linguistic corpora that record frequencies of use for the 200 meanings in the widely used Swadesh fundamental vocabulary. Our interest is to assess evidence for shared patterns of language use around the world, and for the relationship of language use to rates of lexical replacement, defined as the replacement of a word by a new unrelated or non-cognate word. Frequencies of use for words in the Swadesh list range from just a few per million words of speech to 191 000 or more. The average inter-correlation among languages in the frequency of use across the 200 words is 0.73 (p < 0.0001). The first principal component of these data accounts for 70 per cent of the variance in frequency of use. Elsewhere, we have shown that frequently used words in the Indo-European languages tend to be more conserved, and that this relationship holds separately for different parts of speech. A regression model combining the principal factor loadings derived from the worldwide sample along with their part of speech predicts 46 per cent of the variance in the rates of lexical replacement in the Indo-European languages. This suggests that Indo-European lexical replacement rates might be broadly representative of worldwide rates of change. Evidence for this speculation comes from using the same factor loadings and part-of-speech categories to predict a word's position in a list of 110 words ranked from slowest to most rapidly evolving among 14 of the world's language families. This regression model accounts for 30 per cent of the variance. Our results point to a remarkable regularity in the way that human speakers use language, and hint that the words for a shared set of meanings have been slowly evolving and others more rapidly evolving throughout human history.     

Quantitative estimation and forecast of biomasses of hydrobionts’ ecological groups with use of determination analysis

By means of determination analysis, optimum values of phytoplankton biomass and its divisions are calculated. These values provide development of high biomass of such primary consumers as zooplankters. It is shown that representatives of Rotatoria have higher levels of optimum biomass than Crustacea. In the Kara region it is possible to ascertain the increase of such levels for Cladocera in comparison with Copepoda. The prediction of zooplankton communities’ development is carried out using values of optimum biomass of phytoplankton. Accuracy of the forecast in the Azov area is highest, i.e., quantitative requirements of zooplankton for fodder phytoplankton here are poorly subject to variability in time.     

The use of β-galactosidase as a tracer in immunocytochemistry

Summary A new immunocytochemical method using -galactosidase as a tracer is described. The positive staining appears blue on an unstained background. The present method has the high sensitivity and specificity of the immunoperoxidase method and appears to be a practical alternative. The substrate has no carcinogenic activity. Staining is permanent and the sections can be dehydrated and mounted in synthetic media. Enzyme and substrate solutions are stable for several months.     

Facile synthesis of L-Dopa esters by the combined use of tyrosinase and α-chymotrypsin

Summary A novel method for the preparative scale synthesis of L-Dopa esters using tyrosinase-catalysed ortho-hydroxylation and proteinase-catalysed transesterification is described. Several L-Dopa esters have been prepared by the combined use of these two enzymes and fully characterised.     

The use of β-amino acids in the design of protease and peptidase inhibitors

Summary The use of β-amino acids as peptidomimetics has emerged in recent years with significant potential in a number of applications. The incorporation of β-amino acids has been successful in creating peptidomimetics that not only have potent biological activity, but are also resistant to proteolysis. This article reviews the recent applications of β-amino acids in the design of protease and peptidase inhibitors. Given their structural diversity, together with the ease of synthesis and incorporation into peptide sequences using standard solid-phase peptide synthesis techniques, β-amino acids have the potential to form a new platform technology for peptidomimetic design and synthesis.     

Identification of new antimalarial leads by use of virtual screening against cytochrome bc₁

Cytochrome bc(1) is a validated drug target in malaria parasites. The spread of Plasmodium falciparum strains resistant to multiple antimalarials emphasizes the urgent need for new drugs. We screened in silico the ZINC and MOE databases, using ligand- and structure-based approaches, to identify new leads for development. The most active compound presented an IC(50) value against cultured P. falciparum of 2 μM and a docking pose consistent with its activity.