Origin,diffusion and reproduction of the giant reed (Arundo donax L.): a promising weedy energy crop

Giant reed (Arundo donax) is a promising energy crop of the Mediterranean areas. It has long been associated with humans and has been cultivated in Asia, southern Europe, North Africa and the Middle East for thousands of years. It is a perennial herbaceous plant (Poaceae) found in grasslands and wetlands throughout a wide range of climatic zones. Amplified fragment length polymorphism (AFLP) analysis was used to assess genetic inter and intrarelationships between A. donax and other Arundo species. Furthermore, the development of the sexual apparatus was analysed to understand the basis of sterility in the accession examined. The dendrograms obtained by phenetic and cladistic analysis support the monophyletic origin of giant reed and suggest that it originated in Asia and began to spread into the Mediterranean without traces of hybridisation with the other Arundo species. In particular, samples from Mediterranean areas are characterisd by a lower gene diversity and incidence of rare AFLP fragments indicating that these populations are recent in origin. Moreover, results indicate the occurrence of post-meiotic alterations in the ovule and pollen developmental pathway. Thus, the success of giant reed can be attributed mainly to its rapid clonal spread by rhizome extension, flood dispersal of rhizome and culm fragments.     

Seasonal Dynamics of Aboveground and Belowground Biomass and Nutrient Accumulation and Remobilization in Giant Reed (Arundo donax L.): A Three-Year Study on Marginal Land

Giant reed (Arundo donax L.) is a perennial rhizomatous grass that shows promise as a bioenergy crop in the Mediterranean environment. The species has spread throughout the world, catalyzed by human activity, though also as a result of its intrinsic robustness, adaptability, and versatility. Giant reed is able to thrive across a wide range of soil types and is tolerant to drought, salinity, and flooding. This tolerance to environmental stresses is significant and could mean that growing energy crops on marginal land is one possible strategy for reducing competition for land with food production and for improving soil quality. We devised an experiment in which we cultivated giant reed in a sandy loam soil with low nutrient availability. Our goal was to evaluate the dynamics of aboveground and belowground biomass and assess the nutrient dynamics of this grass species, focusing particularly on nutrient accumulation and remobilization. The species demonstrated good productivity potential: In the third year, aboveground dry biomass yield reached around 20 t?ha^?1, with a corresponding rhizome dry biomass yield of 16 t?ha^?1. Results for this species were characterized by low nutrient contents in the aboveground biomass at the end of the growing season, and its rhizome proved able to support growth over the spring period and to store nutrients in the autumn. Nevertheless, the adaptability of giant reed to marginal land and the role of its belowground biomass should be investigated over the long-term, and any further research should focus on its potential to reduce greenhouse gas emissions and maintain soil fertility.     

Evapotranspiration,crop coefficient and water use efficiency of giant reed (Arundo donax L.) and miscanthus (Miscanthus × giganteus Greef et Deu.) in a Mediterranean environment.

Giant reed (Arundo donax L.) and miscanthus (Miscanthus × giganteus Greef et Deu.) are two perennial rhizomatous grasses (PRGs), considered as promising sources of lignocellulosic biomass for renewable energy production. Although the agronomic performance of these species has been addressed by several studies, the literature dedicated to the crop water use of giant reed and miscanthus is still limited. Our objective was thus to investigate giant reed and miscanthus water use by assessing crop evapotranspiration (ET_c), crop coefficients (K_c) and water use efficiency (WUE). The study was carried out in central Italy and specifically designed water-balance lysimeters were used to investigate the water use of these PRGs during the 2010 and 2011 growing seasons. Giant reed showed the highest cumulative evapotranspiration, with an average consumption of approximately 1100 mm, nearly 20% higher than miscanthus (900 mm). Crop evapotranspiration rates differed significantly between the species, particularly during the midseason (from June to September), when average daily ET_c was 7.4 and 6.2 mm in giant reed and miscanthus respectively. The K_c values determined in our study varied from 0.4 to 1.9 for giant reed and 0.3 to 1.6 for miscanthus. Finally, WUE was higher in miscanthus than in giant reed, with average values of 4.2 and 3.1 g L⁻¹ respectively. Further studies concerning water use under nonoptimal water conditions should be carried out and an assessment of the response to water stress of both crops is necessary to integrate the findings from this study.     

Unexpected mosaic distribution of two hybridizing sibling lineages in the teleplanically dispersing snail Stramonita haemastoma suggests unusual postglacial redistribution or cryptic invasion

Molecular approaches have proven efficient to identify cryptic lineages within single taxonomic entities. Sometimes these cryptic lineages maybe previously unreported or unknown invasive taxa. The genetic structure of the marine gastropod Stramonita haemastoma has been examined in the Western Mediterranean and North‐Eastern Atlantic populations with mtDNA COI sequences and three newly developed microsatellite markers. We identified two cryptic lineages, differentially fixed for alternative mtDNA COI haplogroups and significantly differentiated at microsatellite loci. The mosaic distribution of the two lineages is unusual for a warm‐temperate marine invertebrate with a teleplanic larval stage. The Atlantic lineage was unexpectedly observed as a patch enclosed in the north of the Western Mediterranean Sea between eastern Spain and the French Riviera, and the Mediterranean lineage was found in Macronesian Islands. Although cyto‐nuclear disequilibrium is globally maintained, asymmetric introgression occurs in the Spanish region where the two lineages co‐occur in a hybrid zone. A first interpretation of our results is mito‐nuclear discordance in a stable postglacial hybrid zone. Under this hypothesis, though, the location of genetic discontinuities would be unusual among planktonic dispersers. An alternative interpretation is that the Atlantic lineage, also found in Senegal and Venezuela, has been introduced by human activities in the Mediterranean area and is introgressing Mediterranean genes during its propagation, as theoretically expected. This second hypothesis would add an additional example to the growing list of cryptic marine invasions revealed by molecular studies.     

Mediterranean diversification of the grass-feeding Anisopliina beetles (Scarabaeidae, Rutelinae, Anomalini) as inferred by bootstrap-averaged dispersal–vicariance analysis

Aim The circum‐Mediterranean region is one of the most complex regions of the Earth in terms of geography and natural history. The Old World species of the beetle subtribe Anisopliina (Scarabaeidae) feed almost exclusively on the pollen of grasses (Poaceae). Within this group, the ‘anisopliine clade’ forms a monophyletic group distributed mainly in the circum‐Mediterranean region. Here, we reconstruct the biogeographical history of the anisopliine beetles in relation to the diversification of grasses, and compare this reconstruction with previous hypotheses concerning the evolution of the Mediterranean fauna and with palaeogeographical accounts of the history of this region. Location The Mediterranean region, including North Africa, the Western Mediterranean, Balkans–Anatolia, Middle East and Caucasus. Methods Dispersal–vicariance analysis (diva ) was used to reconstruct ancestral distributions based on the morphological phylogeny and to infer the biogeographical processes that have shaped the observed distribution patterns. To account for phylogenetic uncertainty in the biogeographical reconstruction, we ran alternative ancestral distributions derived by diva over a sample of trees obtained by bootstrapping the original data set, reflecting the relative confidence of the ancestral areas on the various clades in the phylogeny. Results The Eastern Mediterranean region and the Caucasus are inferred as the ancestral area of most of the anisopliine lineages. The Eastern Mediterranean region is also reconstructed as the source area of the majority of dispersal events, in particular towards North Africa and the Western Mediterranean. The Iberian Peninsula is inferred as part of the ancestral distribution of the anisopliine clade but also as the setting of several independent colonization events via both the North African platform (Anthoplia) and a European dispersal route (Anisoplia). Main conclusions Our results confirm the role played by the Eastern Mediterranean as an evolutionary cradle of diversity for Mediterranean lineages. This can be explained by a recent and intense orogenic activity that might have promoted isolation and allopatric speciation within lineages. Both the Anomalini fossil record and the close association of anisopliine beetles with grasses suggest that the anisopliine clade originated in the Late Tertiary and that its spatial and temporal evolution within the Mediterranean Basin coincided with that of its major food source, the Mediterranean Poaceae.     

Coypu (<Emphasis Type="Italic">Myocastor coypus</Emphasis>) in a Mediterranean remnant wetland: a pilot study of a yearly cycle with management implications

Following an apparent increase of local population density of coypu (Myocastor coypus) in a Mediterranean remnant wetland, we developed a pilot study aimed to evaluate a specific control program. Inside the study area, we performed three transects per month from August 2008 to July 2009, grouping data in bimonthly periods. The water level in the study area showed a maximum in December–January, significantly decreasing from late spring to summer and significantly increasing from late summer to winter. Sampled individuals mainly occurred in Phragmites reed beds and in rush beds (dominance of Carex sp., Juncus sp. Bolboschoenus sp.). The index of mean relative density of coypu individuals ranged between 1.40 (February–March) and 5.72 (October–November) with an evident increase in late summer–autumn. During this period, mean density of runways was higher in reed beds than in rush beds, with differences tending to significance. In summer, the network of channels in reed beds, locally used for fishery farm, may maintain a water level suitable for the coypu. These results (preference for reed beds and increase of coypu density in late summer–autumn) should be considered when coypu populations are under control program, at least in the Mediterranean region where there is a scarcity of available data.     

Prospects on the evolutionary mitogenomics of plants: A case study on the olive family (Oleaceae)

The mitogenome is rarely used to reconstruct the evolutionary history of plants, contrary to nuclear and plastid markers. Here, we evaluate the usefulness of mitochondrial DNA for molecular evolutionary studies in Oleaceae, in which cases of cytoplasmic male sterility (CMS) and of potentially contrasted organelle inheritance are known. We compare the diversity and the evolution of mitochondrial and chloroplast genomes by focusing on the olive complex and related genera. Using high‐throughput techniques, we reconstructed complete mitogenomes (ca. 0.7 Mb) and plastomes (ca. 156 kb) for six olive accessions and one Chionanthus. A highly variable organization of mitogenomes was observed at the species level. In olive, two specific chimeric genes were identified in the mitogenome of lineage E3 and may be involved in CMS. Plastid‐derived regions (mtpt) were observed in all reconstructed mitogenomes. Through phylogenetic reconstruction, we demonstrate that multiple integrations of mtpt regions have occurred in Oleaceae, but mtpt regions shared by all members of the olive complex derive from a common ancestor. We then assembled 52 conserved mitochondrial gene regions and complete plastomes of ten additional accessions belonging to tribes Oleeae, Fontanesieae and Forsythieae. Phylogenetic congruence between topologies based on mitochondrial regions and plastomes suggests a strong disequilibrium linkage between both organellar genomes. Finally, while phylogenetic reconstruction based on plastomes fails to resolve the evolutionary history of maternal olive lineages in the Mediterranean area, their phylogenetic relationships were successfully resolved with complete mitogenomes. Overall, our study demonstrates the great potential of using mitochondrial DNA in plant phylogeographic and metagenomic studies.     

Dactylopius opuntiae,a new prickly pear cactus pest in the Mediterranean: an overview

The Opuntia cochineal scale or false carmine cochineal scale, Dactylopius opuntiae (Cockerell) (Hemiptera: Dactylopiidae), is spreading rapidly in many countries, especially in the Mediterranean basin, where it has become a serious pest of prickly pear crops, Opuntia ficus‐indica (L.) Miller (Cactaceae). This crop is an important food resource both for humans and livestock. The cochineal was originally used as a biological agent to control cactaceous weeds in many countries where Opuntiaceae had been introduced. Currently, in some countries where the prickly pear is no longer considered a weed but a productive crop, as in the Mediterranean area, D. opuntiae has changed its role from a highly prized biological control agent to the status of serious pest. This paper provides an overview of the current knowledge on D. opuntiae for farmers and stakeholders in order to indicate the most appropriate way to limit or counteract the spread of this pest especially in new cultivated areas.     

Miscanthus × giganteus and Arundo donax shoot and rhizome tolerance of extreme moisture stress

Crops grown for bioenergy production are a mandated component of the United States energy portfolio. Giant miscanthus (Miscanthus × giganteus) is a leading bioenergy crop similar in habit to the invasive plant giant reed (Arundo donax). To characterize the environmental tolerance of giant miscanthus, we compared the soil moisture stress tolerance of giant miscanthus and giant reed under glasshouse conditions. We subjected both species to soil moisture conditions of severe drought (?4.2 MPa), mild drought (?0.5 MPa), field‐capacity (control), and flooded soils. These conditions were applied to two cohorts: one in which soil moisture conditions were imposed on newly planted rhizome fragments, and one in which conditions were imposed on established plants after 8 weeks of growth in field‐capacity soil. After 16 weeks, we harvested all plants, measured above‐ and belowground biomass, and evaluated the reproductive viability of rhizome fragments. The total biomass of each species under flooded conditions was not different from the field‐capacity control groups regardless of cohort. However, drought did affect the two cohorts differently. In the cohort treated after 8 weeks of growth, mild and severe drought conditions resulted in 56% and 66% reductions in biomass, averaged over both species, compared with the controls. In the cohort treated for the entire 16 weeks, mild and severe drought conditions resulted in 92% and 94% reductions in biomass. Rhizome fragments from both species and both cohorts showed 100% viability following flooded and control treatments; drought treatments reduced rhizome viability in both species, with a greater impact on giant miscanthus. Although giant miscanthus does not appear to have the potential to escape and establish in relatively dry upland ecosystems, it does show tolerance to flooded conditions similar to giant reed.     

mtDNA sequences of Sphyraena viridensis (Perciformes: Sphyraenidae) from Italy: insights into historical events and the phylogeny of the genus

The yellowmouth barracuda, Sphyraena viridensis, is a Mediterranean native species whose exact distribution is uncertain due to a long‐term taxonomic confusion with Sphyraena sphyraena. Records of this species in the Mediterranean Sea have recently increased, and a northwards expansion of its distribution has been suggested. Three mtDNA regions, namely cytochrome oxidase I, cytochrome b and the control region, were analysed in S. viridensis samples from Italian coastal regions to provide molecular markers useful in species identification, in phylogenetic analysis and in detecting the distribution of genetic variability of the yellowmouth barracuda in this area. The data clearly distinguish S. viridensis from S. sphyraena and the other four (one native and three Lessepsian) Mediterranean Sphyraena species and identify two clearly distinct lineages that diverged during the Pleistocene but are currently panmictic in the investigated area. Both lineages retain signatures of historical population expansion. © 2014 The Linnean Society of London, Biological Journal of the Linnean Society, 2014, 113 , 635–641.     

Giant reed genotypes from temperate and arid environments show different response mechanisms to drought

Studies at the root level and how the root–shoot interactions may influence the whole crop performance of giant reed (Arundo donax L.) under limited water conditions are largely missing. In the present study, we illustrate the effects of water stress on some phenotypic traits at the root–shoot levels of two giant reed genotypes (from Morocco and Northern Italy) that were reported to have different adaptive hydraulic stem conductivities despite the limited genetic variability of the species. The trial was carried out in 1 m³ rhizotrons (1 × 1 × 1 m) for two consecutive growing seasons. As expected, both genotypes showed an effective behavior to contrast water shortage; however, the Moroccan genotype showed a higher leaf water potential, a lower root length density (RLD) and thinner roots in the upper soil layer (0–20 cm), and similar to control RLD values at deep soil layers (40–60 cm). On the other hand the Italian genotype showed the opposite pattern; that is no drought (DR) effects in RLD and root diameter at upper soil layers and reduced RLD in deep layers, thus revealing different DR adaptation characteristics between two genotypes. This DR adaptation variability might bring new insights on DR tolerance of giant reed identifying potential traits aimed to improve the integral plant functioning, to a more efficient use of water resources, and to a more effective crop allocation to targeted stressful conditions under a climate change scenario that foresees the increase of DR periods.     

A geographic mosaic of evolutionary lineages within the insular endemic newt Euproctus montanus

Islands are hotspots of biodiversity, with a disproportionately high fraction of endemic lineages, often of ancient origin. Nevertheless, intra‐island phylogeographies are surprisingly scarce, leading to a scanty knowledge about the microevolutionary processes induced on island populations by Plio‐Pleistocene climatic oscillations, and the manner in which these processes contributed to shape their current genetic diversity. We investigated the phylogeography, historical demography and species distribution models of the Corsican endemic newt Euproctus montanus (north‐western Mediterranean). As for many island endemics, the continuous distribution of E. montanus throughout its range has hitherto been considered as evidence for a single large population, a belief that also guided the species' categorization for conservation purposes. Instead, we found a geographic mosaic of ancient evolutionary lineages, with five main clades of likely Pliocene origin (2.6–5.8 My), all but one restricted to northern Corsica. Moreover, the copresence between main lineages in the same population was limited to a single case. As also suggested by growing literature on intra‐island phylogeographic variation, it seems that the extensive use of simplifying assumption on the population structure and historical demography of island populations—both in theoretical and applicative studies—should be carefully reconsidered, a claim that is well exemplified by the case presented here.     

Inability to regain normal body mass despite extensive refuelling in great reed warblers following the trans‐Sahara crossing during spring migration

Migratory birds wintering in Africa face the challenge of passing the Sahara desert with few opportunities to forage. During spring migration birds thus arrive in the Mediterranean area with very low energy reserves after crossing the desert. Since early arrival to the breeding grounds often is of importance to maximize reproductive success, finding stopover sites with good refuelling possibilities after the Saharan passage is of utmost importance. Here we report on extensive fuelling in the great reed warbler Acrocephalus arundinaceus on the south coast of Crete in spring, the first land that they encounter after crossing the Sahara desert and the Mediterranean Sea in this area. Birds were studied at a river mouth and due to an exceptional high recapture rate (45 and 51% in two successive years), we were able to get information about stopover behaviour in 56 individual great reed warblers during two spring seasons. The large proportion of trapped great reed warbler compared to other species and the large number of recaptures suggest that great reed warblers actively choose this area for stopover. They stayed on average 3–4 d, increased on average about 3.5 g in body mass and the average rate of body mass increase was 4.8% of lean body mass d^–1. Wing length affected the rate of increase and indicated that females have a slower increase than males. The results found show that great reed warblers at this site regularly deposit larger fuel loads than needed for one continued flight stage. The low body mass found in great reed warblers (also in birds with high fat scores) is a strong indication that birds staging at Anapodaris still had not been able to rebuild their structural tissue after the strenuous Sahara crossing, suggesting that rebuilding structural tissue may take longer time than previously thought.     

Northern richness and cryptic refugia: phylogeography of the Italian smooth newt Lissotriton vulgaris meridionalis

Recent phylogeographical studies have re‐evaluated the role of refugia in central and northern Europe for glacial persistence and postglacial assembly of temperate biota. Yet, on a regional scale within Mediterranean peninsulas, putative ‘northern’ refugia's contribution to the current structure of biodiversity still needs to be fully appreciated. To this end, we investigated the phylogeographical structure and the evolutionary history of the Italian smooth newt, Lissotriton vulgaris meridionalis, through phylogeographical, molecular dating and historical demographic analyses. We found ten differentiated mitochondrial lineages with a clear geographical association, mainly distributed in northern Italy. The most ancient divergence among these lineages was estimated at the Early Pleistocene and was followed by a series of splits throughout the Middle Pleistocene. No haplogroup turned out to be derived from another one, each one occupying terminal positions within the phylogenetic network topologies. These results suggest an unprecedented scenario involving long‐term survival of distinct evolutionary lineages in multiple northern Mediterranean refugia. This scenario mirrors on a smaller geographical scale what has been previously observed in the literature concerning northern European environments; it also sheds more light on how northern Italy has contributed to temperate species' long‐term survival and to the assembly of regional biota. © 2014 The Linnean Society of London, Biological Journal of the Linnean Society, 2014, 113 , 590–603.     

Historical museum collections clarify the evolutionary history of cryptic species radiation in the world's largest amphibians

Inaccurate taxonomic assessment of threatened populations can hinder conservation prioritization and management, with human‐mediated population movements obscuring biogeographic patterns and confounding reconstructions of evolutionary history. Giant salamanders were formerly distributed widely across China, and are interpreted as a single species, Andrias davidianus. Previous phylogenetic studies have identified distinct Chinese giant salamander lineages but were unable to associate these consistently with different landscapes, probably because population structure has been modified by human‐mediated translocations for recent commercial farming. We investigated the evolutionary history and relationships of allopatric Chinese giant salamander populations with Next‐Generation Sequencing methods, using historical museum specimens and late 20th‐century samples, and retrieved partial or near‐complete mitogenomes for 17 individuals. Samples from populations unlikely to have been affected by translocations form three clades from separate regions of China, spatially congruent with isolation by either major river drainages or mountain ranges. Pliocene–Pleistocene divergences for these clades are consistent with topographic modification of southern China associated with uplift of the Qinghai‐Tibet Plateau. General Mixed Yule Coalescent model analysis indicates that these clades represent separate species: Andrias davidianus (Blanchard, 1871) (northern Yangtze/Sichuan), Andrias sligoi (Boulenger, 1924) (Pearl/Nanling), and an undescribed species (Huangshan). Andrias sligoi is possibly the world's largest amphibian. Inclusion of additional reportedly wild samples from areas of known giant salamander exploitation and movement leads to increasing loss of biogeographic signal. Wild Chinese giant salamander populations are now critically depleted or extirpated, and conservation actions should be updated to recognize the existence of multiple species.     

Dating the Dipsacales: comparing models, genes, and evolutionary implications

Dipsacales is an asterid angiosperm clade of ca. 1100 species, with most of its lineages occupying temperate regions of the Northern Hemisphere. A recent phylogenetic analysis based on 7593 nucleotides of chloroplast DNA recovered a well-resolved and strongly supported phylogenetic hypothesis, which we use here to estimate divergence times within the group. A molecular clock is strongly rejected, regardless of data partition. We used recently proposed methods that relax the assumption of rate constancy among lineages (local clocks, nonparametric rate smoothing, penalized likelihood, and Bayesian relaxed clock) to estimate the ages of major lineages. Age estimates for Dipsacales varied widely among markers and codon positions, and depended on the fossils used for calibration and method of analysis. Some methods yielded dates for the Dipsacales diversification that appear to be too old (prior to the presumed 125 my [million years] age of eudicots), and others suggested ages that are too young based on well-documented Dipsacales fossils. Concordant penalized likelihood and Bayesian studies imply that Dipsacales originated in the Cretaceous, as did its two major lineages, Adoxaceae and Caprifoliaceae. However, diversification of crown Adoxaceae and Caprifoliaceae mainly occurred in the Tertiary, with the origin of major lineages within these clades mainly occurring during the Eocene. Another round of diversification appears to have occurred in the Miocene. Several radiations, such as Valerianaceae in South America and Dipsacaceae around the Mediterranean, are even more recent. This study demonstrates the wide range of divergence times that can be obtained using different methods and data sets, and cautions against reliance on age estimates based on only a single gene or methodology. Despite this variance, significant conclusions can be made about the timing of Dipsacales evolution.     

The origins and evolutionary history of feral apples in southern Canada

Feral populations of domesticated crops can establish through two nonmutually exclusive pathways: hybridization with native relatives and recruitment of and recombination between known cultivars. The extent and relative importance of these pathways is not known, especially for woody fruit crops. Here, we examined the evolutionary origins of feral populations of Malus domestica (domestic apple) in southern Canada using a population genetic analysis. We characterized genotypes of 578 putative feral apple trees and evaluated them in relation to genotypes of 156 commercial cultivars, 28 non‐native, ornamental crabapples and 47 native Malus coronaria trees using 14 microsatellite markers. No feral trees were genetic admixtures between domestic and native Malus; however, a minority of trees were admixed with introduced ornamental Malus. Feral trees and commercial cultivars both occurred in two major genetic groups and seven subgroups distributed throughout all commercial growing regions. A total of 42 cultivars, both heritage and currently grown, occurred in probable parental pairs for feral trees, with nine heritage varieties accounting for 72% of parental assignments. We conclude that feral apples in southern Canada are not products of hybridization with native M. coronaria but we cannot exclude ornamental apple species as contributing to the naturalization process. Nonhybrid feral domestic apples have multiple origins, with a prominent signature of early heritage cultivars. These lineages have spread and coexist throughout Ontario, rather than being derived strictly from local sources.     

Uniform phenotype conceals double colonization by reed-warblers of a remote Pacific archipelago

Aim Remote oceanic islands often provide good illustrations of adaptive radiations, but phylogenetic studies have also demonstrated unexpected multiple colonization events for a given archipelago. In this study we investigate the relationships among endemic populations of the Marquesas reed‐warbler, Acrocephalus mendanae Tristram, 1883, which have colonized nearly all islands of this remote Polynesian archipelago, and which exhibit a very uniform plumage pattern. We study the phylogeny and morphology of all subspecies in the Marquesas, providing an examination of the position of the Marquesas lineages in relation to reed‐warblers distributed across multiple Polynesian archipelagos. Location This study focused on all the main islands of the Marquesas archipelago, along with samples from other Polynesian archipelagos (Society, Tuamotu, Austral, Cook, Kiribati) and Australia. Methods We used mitochondrial DNA markers (cytochrome b and ND2 genes) to develop a phylogeny of the main eastern Polynesian taxa. All subspecies for the Marquesas were investigated, including multiple individuals per island. Phylogenetic analyses using maximum‐likelihood and Bayesian approaches were employed to infer relationships among A. mendanae populations and between the main Polynesian archipelagos. Morphometric analyses based on 110 specimens from museum collections were performed on external characters to investigate the differences between islands, and these results were compared to the phylogeny. Results Our data indicate that the Marquesas reed‐warbler is in fact a polyphyletic taxon including two independent lineages: the northern Marquesas reed‐warbler, closely related to the Tuamotu reed‐warbler, and the southern Marquesas reed‐warbler, sister taxon to that endemic to the Kiribati. Analyses of morphological characters show that the size and shape features of the Marquesas reed‐warblers exhibit high plasticity linked to adaptation to ecological factors, particularly habitat richness (the diversity of vegetation structure that provides suitable resources and habitat for reed‐warblers, simplified here as the number of indigenous plant species). Main conclusions Our results suggest that reed‐warblers have successfully colonized the Marquesas archipelago, one of the most remote groups of islands in the Pacific Ocean, at least twice. Both events occurred more or less simultaneously at ca. 0.6 Ma, and are more recent than the islands' formation. We outline the taxonomic consequences of our phylogeny and discuss the supertramp strategy of reed‐warblers in the Pacific.     

Autecological traits determined two evolutionary strategies in Mediterranean plants during the Quaternary: low differentiation and range expansion versus geographical speciation in Linaria

The evolutionary patterns of the Mediterranean flora during the Quaternary have been relatively well documented based on phylogenetic and biogeographic analyses, but few studies have addressed the evolutionary traits that determined diversification and range expansion success during this period. We analysed previously published and newly generated sequences of three plastid noncoding regions (rpl32‐trnL^UAG, trnS‐trnG and trnL‐trnF), the nuclear ribosomal internal transcribed spacer (ITS) and a low‐copy nuclear gene intron (AGT1) of Linaria sect. Supinae, a group of angiosperms that diversified in the Quaternary. The origin and recent colonization dynamics of closely related lineages were inferred by biogeographic reconstruction and phylogeographic analyses, while breeding system experiments coupled with ecological and morphological data were used to test association with range expansion and diversification. A combination of traits, including selfing, short lifespan and the ability to tolerate a wide variety of substrates, were key factors underlying range expansion after long‐distance dispersal throughout the Mediterranean basin. By contrast, self‐incompatibility may have promoted higher diversification rates in narrow ranges of the Iberian Peninsula. We argue that a few traits contributed to the adoption of two contrasting strategies that may have been predominant in the evolution of Mediterranean angiosperms.     

Geography and end use drive the diversification of worldwide winter rye populations

To meet the current challenges in human food production, improved understanding of the genetic diversity of crop species that maximizes the selection efficacy in breeding programs is needed. The present study offers new insights into the diversity, genetic structure and demographic history of cultivated rye (Secale cereale L.). We genotyped 620 individuals from 14 global rye populations with a different end use (grain or forage) at 32 genome‐wide simple sequence repeat markers. We reveal the relationships among these populations, their sizes and the timing of domestication events using population genetics and model‐based inference with approximate Bayesian computation. Our main results demonstrate (i) a high within‐population variation and genetic diversity, (ii) an unexpected absence of reduction in diversity with an increasing improvement level and (iii) patterns suggestive of multiple domestication events. We suggest that the main drivers of diversification of winter rye are the end use of rye in two early regions of cultivation: rye forage in the Mediterranean area and grain in northeast Europe. The lower diversity and stronger differentiation of eastern European populations were most likely due to more intensive cultivation and breeding of rye in this region, in contrast to the Mediterranean region where it was considered a secondary crop or even a weed. We discuss the relevance of our results for the management of gene bank resources and the pitfalls of inference methods applied to crop domestication due to violation of model assumptions and model complexity.