Diatom ecological preferences in a shallow temperate estuary (Ria de Aveiro,Western Portugal)

The study of the diatom ecological preferences was conducted from January 2002 to June 2003 in Canal de Mira, Ria de Aveiro, Western Portugal. Three sampling stations along a salinity gradient were sampled monthly, in new moon, at high and low tide. Salinity, temperature, pH, dissolved oxygen and nutrient contents were measured for each sampling station; chlorophyll a and diatom diversity and abundance were also evaluated. Canonical correspondence analysis was used to identify the environmental variables governing the composition and structure of diatom assemblage. The variation in the species data among the different reaches was strongly determined by the salinity spatial gradient and by the temperature temporal gradient. The lower reaches were dominated by marine species (e.g. Auliscus sculptus, Chaetoceros densus, Fallacia forcipata,Licmophora flabellata, L. grandis, Surirella comis), while in the most upstream station typical freshwater species dominated (e.g. Caloneis permagna, Cymatopleura solea, Cymbella tumida, Gomphonema longiceps, Pinnularia stommatophora, Stauroneis smithii). Weighted averaging was used to estimate optima and tolerances of some diatom taxa for the most influential variables. It was possible to establish groups oftaxa with defined and distinctive salinity and temperature preferences.     

Spatial heterogeneity of bacterial community structure in the sediments of the Pearl River estuary

Denaturing gradient gel electrophoresis (DGGE) and multivariate statistical analytical methods were applied to investigate the spatial variation of bacterial community structure in the Pearl River estuary sediment and to address the relationship between microbial community composition and bottom water chemistry in ten different stations. Preliminary results of sequencing analysis of the excised DGGE bands suggested that α-Proteobacteria, γ-Proteobacteria, Acidobacteria and Actinobacteria were the dominant bacterial groups in the Pearl River estuary sediment. Results of multidimensional scaling analysis of these field data suggested that the composition of bacterial communities varied with sampling sites. Finally, canonical correspondence analysis of the data of environmental variables and bacterial community suggested that bacterial community structure was significantly influenced by the change of environmental variables (total phosphorus, nitrite, ammonium, dissolved oxygen, pH and salinity).     

基于盐分梯度的黑河中游湿地植物多样性及其与土壤因子的关系

湿地植物多样性的研究对维持湿地生态系统完整性和稳定性有着重要意义。以黑河中游湿地为研究对象,基于野外采样数据和不同盐分梯度植物群落多样性指数,重点分析不同盐分梯度植物多样性变化及其与土壤因子关系。结果表明:黑河中游湿地植物组成比较丰富,共出现植物30科71属102种;随土壤盐分梯度增加,植物群落组成发生显著变化,Margalef丰富度指数(R)和Shannon-Weiner多样性指数(H)均减小,说明研究区植物多样性随盐分增加而减少;不同盐分梯度影响植物多样性的土壤因子存在差异,低盐梯度是pH、速效钾和全氮,中盐梯度是pH、速效磷和速效钾,高盐梯度是有机质、全磷、速效钾和速效氮。该研究结果对于认识不同盐分梯度下影响植物多样性的主要土壤因子具有重要意义,同时对黑河中游湿地植物多样性的有效管理和维持具有一定的参考价值。     

Bacterial Productivity Distribution During a Rainy Year in an Estuarine System

Bacterial density and productivity were investigated along four salinity gradients within the estuary Ria de Aveiro. Bacterial variables and environmental parameters were measured at three to four stations spanning the entire salinity gradient of the four channels. The rather high variation in bacterial productivity (0.16–7.6 μg C L⁻¹ h⁻¹) along the profiles of salinity indicates that bacterial activity shows a reactive behavior to environmental changing. Bacterial density (0.5–11.2 × 10⁹ cells L⁻¹) with a comparative smaller variation showed a more conservative behavior, mainly reflecting the phytoplankton distribution. Contrary to expectation, minimal values of bacterial productivity were not observed in November–December but in June. In fact, in November–December, the deep zone near the mouth showed the highest values of bacterial activity. At the upper stations, the highest values were observed in October. The relatively high values of bacterial production during the cold rainy season suggest that allochthonous substrates leached out from the surroundings by rain controlled the distribution of bacterial activity in the estuarine system. The substantial decrease in salinity during the rainy season negatively affected bacterial productivity, namely in the marine zone, where water column was highly stratified. Salinity seems to play an indirect role in the regulation of estuarine bacteria because there are different bacterial communities adapted to a wide salinity range.     

Species composition of benthic fish fauna in the Sea of Marmara,Turkey

In order to determine the present benthic fish fauna in the Sea of Marmara, sampling was conducted at a total of 10 stations for 2 weeks in August 2009, using a commercial twin beam trawling vessel with 18 and 36 mm stretched mesh sizes at the cod-end. In addition, some physicochemical parameters that play important roles, such as temperature, salinity, dissolved oxygen, and pH, were measured for each station. As a result, 31 fish species from 23 families were found at a total of 10 stations in depths of 30–1000 m. At each station, the Shannon–Weaver diversity index, Simpson dominance index, species richness index, and evenness index were estimated. This study reports on species composition of the demersal fish catches in the Sea of Marmara for a preliminary assessment of the status of these fish communities.     

Macrobenthos ofPotamogeton andMyriophyllum beds in the upper reaches of Canal de Mira (Ria de Aveiro,NW Portugal): Community structure and environmental factors

The community structure of the macrobenthic fauna (>0.5 mm) ofPotamogeton andMyriophyllum beds of the upper reaches of Canal de Mira (0.5–2) and of macrofauna density (369, 240 ind m^–2).Potamopyrgus jenkinsi, Corophium multisetosum andLimnodrilus hoffmeisteri are dominant species in the study area. The community of station 1 includes an important set of taxa usually associated to freshwater habitats (oligochaetes, leeches and insect larvae) whilst in station 3 typically estuarine species (Cyathura carinata, Leptocheirus pilosus, Nereis diversicolor, Streblospio shrubsolii) occur. A succession of peak densities of different taxonomic groups during the year indicates seasonal variation in the community structure. The faunal assemblage of the study area is compared with similar ones in NE Atlantic and Mediterranean coastal systems.     

Zooplankton distribution and dynamics in a temperate shallow estuary

The spatial, temporal and tidal dynamics of the zooplanktonic community of the Mondego estuary was studied from January 2003 to 2004. The monthly sampling procedure included the measurement of hydrological parameters (salinity, temperature, Secchi transparency, chlorophyll a and nutrients) and the collection of zooplankton with a Bongo net of 335 μm mesh size. Zooplankton composition, distribution, density, biomass and diversity were determined. The principal component analysis (PCA) revealed the existence of a spatial gradient with the upstream sampling stations, associated to high values of nutrients, in opposition to the downstream stations characterized by higher salinity and transparency values. The Copepoda was the main dominant group and Acartia tonsa revealed to be the more abundant taxon. The spatial and temporal dynamics of zooplanktonic communities analysed by non-metric MDS showed the existence of four assemblages of species-sites, reflecting differences in zooplankton composition between both branches of the estuary. The results suggest that abundance, biomass and diversity of the zooplanktonic community are strongly influenced by the hydrological circulation pattern and by direct or indirect human impacts that occur in each branch. The northern branch is dominated by the river flow suffering from regular dredging activities and the southern branch is dominated by tidal circulation suffering from an ongoing eutrophication process.     

Survival, osmoregulation and oxygen consumption of YOY coastal largemouth bass,Micropterus salmoides (Lacepede) exposed to saline media

The effect of salinity on survival, osmoregulation and oxygen consumption was determined on coastal young-of-the-year (YOY) largemouth bassMicropterus salmoides by exposing them to saline media of 0, 4, 8, 12, and 16‰. The data indicated a decrease in survival with longer exposure time and increased salinity. There were no significant differences in plasma osmolality with increased salinity from 0 to 8‰ but osmolality was significantly greater at 12‰ than 0‰ and osmolality from 16‰ was greater than all other salinity treatments. No significant differences in hematocrits were detected between 0 and 12‰, but hematocrits in the 16‰ treatment were significantly reduced compared to all other treatments. YOYM. salmoides are good osmoregulators up to 8‰ but increased salinity caused measurable osmoregulatory dysfunction. Oxygen consumption rate increased significantly as salinity increased, suggesting that adaptation of this species to hypersaline media is in part accompanied by increased energy expenditure.     

A Dissolved Oxygen Threshold for Shifts in Bacterial Community Structure in a Seasonally Hypoxic Estuary

Pelagic ecosystems can become depleted of dissolved oxygen as a result of both natural processes and anthropogenic effects. As dissolved oxygen concentration decreases, energy shifts from macrofauna to microorganisms, which persist in these hypoxic zones. Oxygen-limited regions are rapidly expanding globally; however, patterns of microbial communities associated with dissolved oxygen gradients are not yet well understood. To assess the effects of decreasing dissolved oxygen on bacteria, we examined shifts in bacterial community structure over space and time in Hood Canal, Washington, USA−a glacial fjord-like water body that experiences seasonal low dissolved oxygen levels known to be detrimental to fish and other marine organisms. We found a strong negative association between bacterial richness and dissolved oxygen. Bacterial community composition across all samples was also strongly associated with the dissolved oxygen gradient, and significant changes in bacterial community composition occurred at a dissolved oxygen concentration between 5.18 and 7.12 mg O₂ L^-1. This threshold value of dissolved oxygen is higher than classic definitions of hypoxia (<2.0 mg O₂ L^-1), suggesting that changes in bacterial communities may precede the detrimental effects on ecologically and economically important macrofauna. Furthermore, bacterial taxa responsible for driving whole community changes across the oxygen gradient are commonly detected in other oxygen-stressed ecosystems, suggesting that the patterns we uncovered in Hood Canal may be relevant in other low oxygen ecosystems.     

Hydrobiology of the Marennes-Oléron bay. Seasonal indices and analysis of trends from 1978 to 1995

A hydrobiological monitoring network has been in place since 1977 in the Bay of Marennes Oleron (France). Data collected for physical variables (seawater temperature, salinity, oxygen concentration), nutrients (ammonium, nitrates, phosphates and silicates) and chlorophyll a and pheophytin, from 5 representative stations in the bay, were examined by time-series analysis (Census II method) to study seasonal variability and trends. The seasonal changes were similar over the entire Marennes Oleron Bay for all variables and were chiefly influenced by fluxes in the Charente river. The seasonal range reached 180 units for nitrates and 70 and 100 units respectively for phosphates and silicates. These values were similarly mostly correlated with the Charente River fluxes. With regard to long-term trends, seawater temperature has shown a significantly increasing trend close to 2 °C over 18 years. At the same time, a 1 °C gradient was demonstrated from the northern to the southern part of the Bay. The salinity trend varied between 30 and 34‰for all stations. The trend for oxygen concentration, ranged from 90 to 100% but during a specific two year period (1980–1982) saturation decreased to 76% in the northern part of the Bay. The trend analysis for nitrates showed a significant relationship with the water output level of the Charente. Phosphate inputs have been irregular during the two last decades which has affected primary productivity along the coastline (e.g., spring 1979–1983; 1990; 1993–1995). Since 1988, a significant increasing trend for ammonium was observed at the mouth of the Seudre river (4 μmoles l−1 ) while other stations were well below this, ranging from 1 to 3 μmoles l−1 . This should be considered as an indicator of seawater deterioration within the southern part of the Marennes Oleron Bay. This revised version was published online in July 2006 with corrections to the Cover Date.     

Salinity and nutrients in a tropical coastal lagoon with groundwater discharges to the Gulf of Mexico

This study described the nutrient dynamics in a tropical coastal lagoon that is affected by the infiltration of cold nutrient-rich groundwater. The spatial and time variation of physicochemical characteristics (e.g., temperature, salinity, oxygen) and nutrients (e.g., nitrate, ammonium, soluble reactive silicate, soluble reactive phosphorus) are depicted and show changes with respect to weather conditions. The lagoon shows a permanent salinity gradient from the inner zone (14–19). Nitrate and soluble reactive silicate (SRSi) are inversely correlated with salinity. Soluble phosphorus (SRP) shows highest levels in the inner zone during winter months (>9 µM). Ammonium shows two high peaks, one in the rainy season (15 µM) and the other during winter (11 µM). The intensity and quality of rainfall influences the nitrate and SRSi inputs, while biological activity influences the SRP and ammonium levels.     

Spatial structure of eukaryotic ultraplankton community in the northern South China Sea

Spatial distribution, diversity and composition of eukaryotic ultraplankton community of the northern South China Sea (nSCS) surface water and the relationship with the in situ water environment were investigated by the method of polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE). A total of 18 DGGE intensive bands were detected and the sequence analysis of these DGGE bands revealed that Alveolata was the dominant eukaryotic ultraplankton group of surface water in the nSCS (50%). Other species belonged to Bicoecea, Bolidophyceae, Polycystinea and Chlorophyta, which accounted for less proportion of eukaryotic ultraplankton in the study area. Unweighted pair group method with arithmetic averages clustering of the sampling stations indicated that all stations were classified mainly based on geographical proximity. Redundancy analysis (RDA) was employed to further investigate the relationships between DGGE band pattern and the environmental variables. Based on the RDA analysis, temperature, salinity, phosphorus and silicate were the important factors to shape the eukaryotic ultraplankton community composition in the nSCS.     

Oxygen solubility in evaporated seawater as a function of temperature and salinity

Most studies of oxygen solubility values for high salinity conditions have used synthetic solutions. The object of this study is therefore to propose an equation, valid for high salinity conditions, based on the analysis of oxygen saturation in evaporated seawater. In this study, the solubility of oxygen in evaporated seawater has been determined over a temperature range of 8–35°C and with salinity values of up to 133‰. Based on experimental data, an equation is proposed that introduces a S ² (salinity) term, at 1 atm pressure, giving increased importance to salinity. The equation provides a valid means of predicting the amount of dissolved oxygen in this range of temperatures and salinities. In addition, for high salinity conditions, with this equation there is no need to extrapolate other established equations, which are less accurate at salinities higher than 40‰. The use of the proposed equation offers a more precise way of calculating oxygen solubility in seawater at high salinity values (up to 133‰), and small deviations from experimental values, of the order of 2 μmol kg⁻¹, are obtained. Handling editor: J. Melack     

水分梯度下荒漠植物多样性与稳定性对土壤因子的响应

荒漠生态系统多样性的研究对维持荒漠区群落稳定性有着重要意义。以艾比湖流域荒漠植物群落为研究对象,基于野外样方调查数据及实验分析,探讨不同水分梯度下植物多样性与稳定性的变化规律及土壤因子对二者的影响。结果表明：（1）随土壤水分含量下降,Shannon-Wiener多样性指数（H）、Simpson多样性指数（D）、Pielou均匀度指数（J）、Margalef丰富度指数（R）和种群密度稳定性（ICV）指数均呈下降趋势,且当土壤含水量低于4.65%时,荒漠植物多样性与群落稳定性总体显著降低（P<0.05）;（2）不同水分梯度下影响艾比湖流域植物多样性的土壤因子具有差异性,高水梯度为硝态氮与有机质,中水梯度下影响植物多样性的因子为pH,低水梯度为全氮和有机质;（3）仅在环境适宜的情况下,土壤因子（土壤含盐量与有机质）才能对群落稳定性产生显著影响（P<0.01）;（4）三种梯度下,物种多样性均对群落稳定性有显著性影响（P<0.001）,植物多样性与群落稳定性存在正相关关系。     

Spatial distribution of subtidal Nematoda communities along the salinity gradient in southern European estuaries

This study investigated the spatial distribution of subtidal nematode communities along the salinity gradients of two Portuguese estuaries exposed to different degrees of anthropogenic stress: the Mira and the Mondego.The nematode communities were mainly composed of Sabatieria, Metachromadora, Daptonema, Anoplostoma, Sphaerolaimus and Terschellingia species, closely resembling the communities of Northern European estuaries. In both estuaries, nematode density and community composition followed the salinity gradient, naturally establishing three distinct estuarine sections: (i) freshwater and oligohaline – characterised by the presence of freshwater nematodes, low nematode density and diversity; (ii) mesohaline – dominated by Terschellingia, Sabatieria and Daptonema, with low total density and diversity; and (iii) polyhaline and euhaline – where nematodes reached the highest density and diversity, and Paracomesoma, Synonchiella, and Odontophora were dominant.Despite the similarities in community composition and total nematode density, the proportion of different nematode feeding types were remarkably different in the two estuaries. In Mira, selective deposit feeders were dominant in the oligohaline section, while non-selective deposit feeders were dominant in the other sections. On the contrary, in the Mondego estuary, epigrowth-feeders and omnivores/predators were dominant in the freshwater sections and in the euhaline sector of the southern arm.Differences observed along each estuarine gradient were much stronger than overall differences between the two estuaries. In the Mondego estuary, the influence of anthropogenic stressors seemed not to be relevant in determining the nematodes' spatial distribution patterns, therefore suggesting that mesoscale variability responded essentially to natural stressors, characteristic of estuarine gradients. Nevertheless, the proportion of the different feeding types was different between the two estuaries, indicating that the response of nematode feeding guilds is able to reflect anthropogenic-induced stress and can be useful in assessing biological quality in transitional waters ecosystems.     

Geochemical factors impacting nitrifying communities in sandy sediments

Sandy sediment beaches covering 70% of non-ice-covered coastlines are important ecosystems for nutrient cycling along the land-ocean continuum. Subterranean estuaries (STEs), where groundwater and seawater meet, are hotspots for biogeochemical cycling within sandy beaches. The STE microbial community facilitates biogeochemical reactions, determining the fate of nutrients, including nitrogen (N), supplied by groundwater. Nitrification influences the fate of N, oxidising reduced dissolved inorganic nitrogen (DIN), making it available for N removal. We used metabarcoding of 16S rRNA genes and quantitative PCR (qPCR) of ammonia monooxygenase (amoA) genes to characterise spatial and temporal variation in STE microbial community structure and nitrifying organisms. We examined nitrifier diversity, distribution and abundance to determine how geochemical measurements influenced their distribution in STEs. Sediment microbial communities varied with depth (p-value = 0.001) and followed geochemical gradients in dissolved oxygen (DO), salinity, pH, dissolved inorganic carbon and DIN. Genetic potential for nitrification in the STE was evidenced by qPCR quantification of amoA genes. Ammonia oxidiser abundance was best explained by DIN, DO and pH. Our results suggest that geochemical gradients are tightly linked to STE community composition and nitrifier abundance, which are important to determine the fate and transport of groundwater-derived nutrients to coastal waters.     

Molecular Ecology Techniques Reveal Both Spatial and Temporal Variations in the Diversity of Archaeal Communities within the Athalassohaline Environment of Rambla Salada, Spain

We have studied the distribution of the archaeal communities in Rambla Salada (Murcia, Spain) over three different seasons and observed the influence upon them of the environmental variables, salinity, pH, oxygen and temperature. Samples were collected from three representative sites in order to gain an insight into the archaeal population of the rambla as a whole. Denaturing gradient gel electrophoresis patterns and diversity indexes indicate that the diversity of the archaeal community in Rambla Salada changed mainly according to the season. We found no significant differences between the types of sample studied: watery sediments and soils. The upwelling zone showed most diversity in its archaeal community. The overall archaeal community was composed mainly of Halobacteriales and Thermoplasmatales, accounting for 72.6 and 12.1 % of the total, respectively. Haloarcula was the most abundant genus, being present at all three sites during all three seasons. Some few Crenarchaeota were always found, mainly at low-salinity levels. Ordination canonical correspondence analysis demonstrated that salinity affected the structure of the community significantly, whilst pH, oxygen and temperature did so to a lesser extent. Most Halobacteriales correlated positively with salinity and pH, whilst Thermoplasmatales correlated negatively with both salinity and pH and positively with temperature and oxygen. The archaeal community with the highest diversity was sampled during June 2006, the season with the highest salt concentration. Catalyzed reporter deposition-fluorescence in situ hybridization showed that the percentage of archaea in Rambla Salada compared to the total number of microorganisms (as measured by DAPI) ranged from 11.1 to 16.7 %. Our research group had isolated the most abundant taxon, Haloarcula, previously in Rambla Salada using classical culture techniques, but on this occasion, using culture-independent methods, we were also able to identify some phylotypes, Halorubrum, Methanolobus, Natronomonas, Halomicrobium, Halobacterium, Halosimplex, uncultured Thermoplasmatales and uncultured Crenarchaeota, that had remained undetected during our earlier studies in this habitat.     

Bacterioplankton Community Variation Across River to Ocean Environmental Gradients

Coastal zones encompass a complex spectrum of environmental gradients that each impact the composition of bacterioplankton communities. Few studies have attempted to address these gradients comprehensively. We generated a synoptic, 16S rRNA gene-based bacterioplankton community profile of a coastal zone by applying the fingerprinting technique denaturing gradient gel electrophoresis to water samples collected from the Columbia River, estuary, and plume, and along coastal transects covering 360 km of the Oregon and Washington coasts and extending to the deep ocean (>2,000 m). Communities were found to cluster into five distinct groups based on location in the system (ANOSIM, p < 0.003): estuary, plume, epipelagic, shelf bottom (depth < 150 m), and slope bottom (depth > 650 m). Across all environments, abiotic factors (salinity, temperature, depth) explained most of the community variability (ρ = 0.734). But within each coastal environment, biotic factors explained most of the variability. Thus, structuring physical factors in coastal zones, such as salinity and temperature, define the boundaries of many distinct microbial habitats, but within these habitats variability in microbial communities is explained by biological gradients in primary and secondary productivity.     

Nutrient limitation of phytoplankton growth in Waquoit Bay, Massachusetts, USA: a nutrient enrichment study

We conducted nutrient enrichment experiments and field sampling to address three questions: (1) is there nutrient limitation of phytoplankton accumulation within an estuary whose waters are exposed to relatively high nitrogen loading rates, (2) where in the salinity gradient from fresh to seawater (0 to 32‰) is there a shift from phosphorus to nitrogen limitation of phytoplankton accumulation, and (3) is there a seasonal shift in limiting function of phosphorus and nitrogen anywhere in the estuarine gradient. Nitrogen and phosphorus enrichment experiments in the Childs River, an estuary of Waquoit Bay, Massachusetts, USA, showed that the accumulation of phytoplankton biomass in brackish and saline water was limited by supply of nitrate during warm months. The effects of enrichment were less evident in fresh water, with short-lived responses to phosphate enrichment. There was no specific point along the salinity gradient where there was a shift from phosphorus- to nitrogen-limited phytoplankton accumulation; rather, the relative importance of nitrogen and phosphorus changed along the salinity gradient in the estuary and with season of the year. There was no response to nutrient additions during the colder months, suggesting that some seasonally-varying factor, such as light, temperature or a physiological mechanism, restricted phytoplankton accumulation during months other than May-Aug. There was only slight evidence of a seasonal shift between nitrogen- and phosphorus-limitation of chlorophyll accumulation. Phytoplankton populations in nutrient-rich estuaries with short flushing times grow fast, but at the same time the cells may be advected out of the estuaries while still rapidly dividing, thereby providing an important subsidy to production in nearby deeper waters. This revised version was published online in August 2006 with corrections to the Cover Date.     

Contrasting dynamics of ciliate communities in sandy and silty sediments of an estuarine intertidal flat

During a 1-year study of the ciliate faunas of a silty and a sandy site on an intertidal flat in the Westerschelde estuary, a total number of 107 taxa were recorded belonging to at least 52 genera and 15 orders. Our results suggest that physical properties of the sediment were more important in regulating ciliate abundance, diversity and community composition than food availability, predation, temperature or oxygen concentration. Ciliate abundance and diversity were positively related to sediment grain size and the ciliate community of silty sediments was found to be a subset of that of sandy sediments. At the sandy site, where the sediment composition was stable, seasonal changes in the ciliate community were related to changes in food availability and/or temperature. At both the sandy and silty sites, a clear vertical gradient in the ciliate community was observed that appeared to be linked to gradients in food availability and oxygen concentration. These vertical gradients in ciliate community composition, however, were less steep than the measured oxygen gradients, probably due to the presence of oxic microniches in the anoxic zone.