Relationship between topographic heterogeneity and vegetation patterns in a Californian salt marsh

Questions: Are species richness and species abundances higher in the presence of tidal creeks? Do species richness and species abundances vary with plot size? Location: Intertidal plain of Volcano Marsh, Bahia de San Quintin, Mexico. Methods: We analysed vegetation patterns in large areas (cells) with tidal creeks (+creek) and without (‐creek). We surveyed vegetation cover, microtopography, habitat type, and distance to creeks in nested plots of five sizes, 0.1, 0.25, 1, 2.5, and 10 m². Results: Species richness, frequency, cover, and assemblages differed between ±creek cells. Richness tended to be higher in +creek cells, and cover and frequency of individual species differed significantly between ±creek cells. We found consistent patterns in vegetation structure across plot sizes. We encountered 13 species that occurred in 188 unique assemblages. The most common assemblage had six species: Batis maritima, Frankenia salina, Salicornia bigelovii, S. virginica, Salicornia spec. and Triglochin concinna. This assemblage occurred in ±creek cells and at all spatial scales. Of the most common assemblages all but one were composed of multiple species (3–9 species/plot). Conclusions: The persistence of vegetation patterns across a 100‐fold range in spatial scale suggests that similar environmental factors operate broadly to determine species establishment and persistence. Differences in assemblage composition result from variation of frequency and cover of marsh plain species, particularly Suaeda esteroa and Monanthochloe littoralis. The recommendation for restoration of Californian salt marshes is to target (and plant) multi‐species assemblages, not monocultures.     

Fish assemblages across a complex,tropical freshwater/marine ecotone

Synopsis Riverine fish assemblages in the temperate zone generally show strong longitudinal patterns of faunal turnover and increases in species richness with increasing stream order. We examined the composition and structure of tropical fish assemblages across a complex freshwater/marine ecotone in Tortuguero National Park on the Caribbean coast of Central America. Species turnover was high between four characteristic habitats that largely corresponded with a longitudinal gradient of stream order over distances of less than 30 km. Suites of common fish species characterized each habitat: creeks, rivers, lagoons, and the sea. In addition to the habitat endemics, several species spanned two habitat types, but only three species were collected in more than two habitats. Multivariate gradient analysis of fish assemblages reflected a gradient of habitats that to some extent corresponded to fluvial distances. Due to the unusual configuration of coastal lagoons lying parallel to the coast, the ordination gradient showed little correlation with linear distance to the coast. Environmental variables related to habitat size and salinity showed greatest correspondence with the fish assemblage ordination gradient. Invertebrate-feeding fishes were the predominant trophic group in 15 of 16 fish assemblages, and inland creek sites contained a greater proportion of herbivores and omnivores than other sites. The relative fraction of herbivorous and detritivorous fishes showed a monotonic decline along the longitudinal habitat gradient from inland to coast. Patterns of species composition and richness at Tortuguero Park appeared to agree well with earlier models of factors influencing temperate zone stream fishes. Headwaters have low aquatic primary productivity and contain small colonizing fish species subject to large fluctuations in local densities and intermittent competition. Lagoons contain both large and small species, the latter being restricted largely to shallow edge habitats by predation. Lagoons exhibit more lentic environmental conditions, experience relatively fewer periodic disturbances than headwaters, and their assemblages are inferred to be under relatively greater influence of biotic factors. Fish assemblages of rivers and caños (swampy side channels and braids) appear to be under less abiotic control than headwaters and influenced less by biotic factors than lagoons.     

The fishes associated with three intertidal salt marsh creeks in a temperate southern African estuary

This study compares the fish assemblages in a range of intertidal salt marsh creeks in the Kariega Estuary, South Africa, as well as highlighting any differences between the ichthyofaunal structure of the creeks and adjacent Zostera bed habitats. The superimposition of environmental variables on the creek biotic groupings (60% similarity level) indicated consistent relationships between both the creek water depth and mouth area with the major creek fish clusters. Water temperature, salinity and turbidity did not display any pattern which could explain the disparity between the ichthyofaunal groupings. The results also indicated that intertidal creeks form a unique littoral habitat within the Kariega Estuary, with ichthyofaunal compositions very different to those found in nearby eelgrass beds. Furthermore, intertidal creeks in the Kariega system appear to be similar to creeks found elsewhere in the world in that their fish assemblages are dominated by 0+ juveniles, have a conspicuous marine transient and estuarine resident component, and very few piscivorous representatives. These results also give weight to the hypothesis that southern African salt marsh creek habitats serve as temporary refuges to juvenile fishes, a role that has also been proposed in other parts of the world.     

Do terrestrial invertebrates experience floodplains as landscape mosaics? Immediate and longer-term effects of flooding on ant assemblages in a floodplain forest

Considering the floodplain landscape as a mosaic of habitat patches at different successional stages is useful for understanding (1) the processes associated with individual floods and (2) the legacy of flood history. Here, we investigate the applicability of the mosaic model to opportunistic ant species inhabiting the floodplain. Ground-active ant assemblages in river red gum (Eucalyptus camaldulensis) floodplain forest in south-eastern Australia were sampled before and for two years after a major flood in 2000–2001 at 24 sites with different inundation histories. Despite the mobility and opportunistic life history traits of floodplain ants, flood history appeared to impose a persistent mosaic structure on ant assemblages. Increasing duration of inundation of the forest floor was associated with decreasing species richness. β-diversity was low, with the ant species at the most inundation-prone sites being a subset of those at drier sites. Less extensive flooding occurred in 2002–2003, enabling the consistency of short-term responses to inundation to be assessed. Flooding acts as a resetting mechanism, creating a characteristic ant assemblage. After floodwaters receded, there was little evidence of convergence in the structure of ant assemblages through time between sites flooded for different durations. The persistence of dissimilarities in ant assemblages suggests that succession towards terrestrialization was either not occurring or that it was operating at a rate that was too slow to be detected.     

Effects of macrophyte complexity and hydrometric level on fish assemblages in a Neotropical floodplain

Habitat heterogeneity provided by aquatic macrophytes and water level variations (flood pulse) are essential factors in structuring fish assemblages. This study aimed to describe the fish species that prefers macrophytes covered areas and to evaluate how macrophytes complexities and a flood pulse influence the structure of fish assemblages and selected attributes (viz. fish species density, species richness and evenness). Sampling was performed with seining nets in five floodplain lakes associated with the Baía River, before (November to December 2011) and after (February to July 2012) a flood, considering different degrees of macrophyte complexity (Absent, intermediate, and high). A total of 48 fish species was recorded, with Characiformes the most dominant. Eight species were indicators of high complexities (seven before the flood and only one after). Significant differences among the different degrees of macrophyte complexity and before and after the flood were found for assemblage structure, species density and richness. Fish assemblage attributes were high in higher habitat heterogeneity provided by macrophytes, but all before the flood. Nevertheless, macrophyte stands with high and intermediate complexity were less affected by the flood, suggesting that the structure propitiated by macrophytes favors the persistence of the fish assemblage in floodplain lakes. Therefore, any action towards conservation of fish assemblages in macrophytes should consider dam operation upstream, to ensure seasonality of flood pulses.     

Stream fish assemblages in relation to environmental factors on a montane plateau (Nyika Plateau,Malawi)

Few studies have examined river fishes of Malawi. This study is one of the first to examine the stream fish assemblages on the Nyika Plateau in northern Malawi. Twenty four sites were sampled over three different periods in two river systems of the plateau. Eighteen species were collected and among these was Hippopotamyrus ansorgii, the first collection of this species in the Lake Malawi catchment. Three species, including a non-native trout, were common in the two systems studied. Correspondence analysis (CA) suggested gradients in species composition related to altitude and river type. Species succession, from a trout dominated upstream to a downstream dominated by indigenous species, was shown on the first CA axis. The second CA axis showed the assemblage of the plateau separated by river type. A direct gradient analysis method, canonical correspondence analysis (CCA), showed the importance of two stream position metrics (stream order and c-link), depth, water temperature and substrate type in determining species composition. According to variation partitioning in CCA, the spatial and temporal components respectively explained 46% and 3.6% variation in assemblage composition based on the all species data matrix, and 48.7% and 2.6% variation in assemblage composition based on the native species data matrix. The species collected were also discussed in relation to the morphological adaptations in their body forms to the environmental conditions of the streams studied.     

Evaluation of Long‐Term Response of Intertidal Creek Nekton to Phragmites australis (Common Reed) Removal in Oligohaline Delaware Bay Salt Marshes

In the oligohaline Alloway Creek watershed of the upper Delaware Bay, invasive Phragmites australis (Common reed; hereafter Phragmites) has been removed in an attempt to restore tidal marshes to pre‐invasion form and function. In order to determine the effects of Phragmites on nekton use of intertidal creeks and to evaluate the success of this restoration, intertidal creek nekton assemblages were sampled with weirs from May to November for 7 years (1999‐2005) in three marsh types: natural Spartina alterniflora (Smooth cordgrass; hereafter Spartina), sites treated for Phragmites removal (hereafter referred to as Treated), and invasive Phragmites marshes. Replicate intertidal creek collections in all three marsh types consisted primarily of resident nekton and were dominated by a relatively low number of ubiquitous intertidal species. The Treated marsh nekton assemblage was distinguished by greater abundances of most nekton, especially Fundulus heteroclitus (Mummichog). Phragmites had little impact on nekton use of intertidal creeks over this period as evidenced by similar nekton assemblages in the Spartina and Phragmites marshes for most years. Long‐term assemblage‐level analyses and nekton abundances indicated that the Treated marsh provided enhanced conditions for intertidal creek nekton. The response of intertidal creek nekton suggests that the stage of the restoration may influence the results of comparisons between the marsh types and should be considered when evaluating marsh restorations.     

Convergence of temperate and tropical stream fish assemblages

The hypothesis of convergence takes the deterministic view that community (or assemblage) structure can be predicted from the environment, and that the environment is expected to drive evolution in a predictable direction. Here we present results of a comparative study of freshwater fish assemblages from headwater streams in four continents (Europe, North America, Africa and South America), with the general objective of testing whether these assemblages display convergent structures under comparable environmental conditions (i.e. assemblage position in the stream longitudinal continuum). We tested this hypothesis by comparing species richness and trophic guilds of those stream fish assemblages represented in available data from multiple sites on each continent. Independent of phylogenetic and historical constraints, fish assemblage richness and trophic structure in the four continents converged along the stream continua to a substantial degree. For the four continents, assemblage richness increased, the proportion of invertivorous species decreased, and the proportion of omnivorous species increased from upstream to downstream, supporting theoretical predictions of the river continuum concept. However, the herbivore/detritivore and piscivore guilds were virtually absent from our small European and North American stream sites, unlike our African and South American stream sites. This divergence can be linked to differences in energy availability between temperate and tropical systems.     

Fish larvae, growth and biomass relationships in an Australian arid zone river: links between floodplains and waterholes

1. Floodplain inundation provides many benefits to fish assemblages of floodplain river systems, particularly those with a predictable annual flood pulse that drives yearly peaks in fish production. In arid‐zone rivers, hydrological patterns are highly variable and the influence of irregular floods on fish production and floodplain energy subsidies may be less clear‐cut. To investigate the importance of floodplain inundation to a dryland river fish assemblage, we sampled fish life stages on the floodplain of Cooper Creek, an Australian arid‐zone river. Sampling was focused around Windorah during a major flood in January 2004 and in isolated waterholes in March 2004 following flood drawdown. 2. Of the 12 native species known to occur in this region, 11 were present on the floodplain, and all were represented by at least two of three life‐stages – larvae, juveniles or adult fish. Late stage larvae of six fish species were found on the floodplain. There were site‐specific differences in larval species assemblages, individual species abundances and larval distribution patterns among floodplain sites. 3. Significant growth was evident on the floodplain, particularly by larval and juvenile fish, reflecting the combination of high water temperatures and shallow, food rich habitats provided by the relatively flat floodplain. 4. Low variation in biomass, species richness and presence/absence of juvenile and adult fish across four floodplain sites indicates consistently high fish productivity across an extensive area. 5. Similarities and differences in fish biomass between the floodplain and isolated post‐flood waterholes suggest high rates of biomass transfer (involving the most abundant species) into local waterholes and, potentially, biomass transfer by some species to other waterholes in the catchment during floodplain inundation and after floods recede. 6. The high concentration of fish on this shallow floodplain suggests it could be a key area of high fish production that drives a significant proportion of waterhole productivity in the vicinity. The Windorah floodplain provides favourable conditions necessary for the spawning of some species and juvenile recruitment of the majority of species. It is also appears to be a significant conduit for the movements of fish that underpin high genetic similarity, hence population mixing, of many species throughout the Cooper Creek catchment. The high floodplain fish production in turn provides a significant energy subsidy to waterholes after floodwaters recede. 7. The identification of key sites of high fish production, such as the Windorah floodplain, may be important from a conservation perspective. Key management principles should be: maintenance of the natural flooding regime; identification of the most productive floodplain areas; and maintenance of their connectivity to anastomosing river channels and the remnant aquatic habitats that ultimately sustain this fish assemblage through long‐term dry/drought and flood cycles.     

Stream–floodplain connectivity and fish assemblage diversity in the Champlain Valley, Vermont, U.S.A.

To evaluate the influence of main channel–floodplain connectivity on fish assemblage diversity in floodplains associated with streams and small rivers, fish assemblages and habitat characteristics were surveyed at 24 stream reaches in the Champlain Valley of Vermont, U.S.A. Fish assemblages differed markedly between the main channel and the floodplain. Fish assemblage diversity was greatest at reaches that exhibited high floodplain connectivity. Whereas certain species inhabited only main channels or floodplains, others utilized both main channel and floodplain habitats. Both floodplain fish α-diversity and γ-diversity of the entire stream corridor were positively correlated with connectivity between the main channel and its floodplain. Consistent with these results, species turnover (as measured by β-diversity) was negatively correlated with floodplain connectivity. Floodplains with waterbodies characterized by a wide range of water depths and turbidity levels exhibited high fish diversity. The results suggest that by separating rivers from their floodplains, incision and subsequent channel widening will have detrimental effects on multiple aspects of fish assemblage diversity across the stream–floodplain ecosystem.     

Associations between fish assemblages and environmental factors for Mediterranean-type rivers during summer

The structure of summer fish assemblages was examined along longitudinal gradients in 31 Mediterranean-type rivers of the middle Guadiana basin (south-west Iberian Peninsula), using data from 157 sites including small streams to deep rivers. An ordination analysis, based on 16 variables, was applied to species presence, using principal component and canonical correspondence analysis. The results for the habitat data were compared with those for the biological data using a Mantel analysis, and the agreement was highly significant. Spatial structure was considered by partitioning the total variability among the environmental and geographical variables. The fish assemblages showed longitudinal zoning during the summer, with species distributed over gradients of habitat size (depth), water quality (current and physico-chemical variables), and cover (substratum and vegetation), according to their adult size and life history. The size of the habitat that remained available in summer had the greatest biological effect, being the most important factor explaining fish species distribution and assemblage structure during this stressing season. Strictly spatial variation was low, but there was still a high residual variation. Habitat associations and life-history strategies are discussed for native and exotic species.     

Relationships between fish assemblages, macrophytes and environmental gradients in the Amazon River floodplain

During the flood season of 1992–1993, 139 species of fishes were collected from a floodplain lake system in the central Amazon Basin. Fish species distribution was examined relative to abiotic variables in seven vegetation strata on Marchantaria Island, Solimões River. Both environmental variables and species distributions were influenced by a river channel to floodplain-interior gradient. Species diversity was significantly higher in vegetated areas than in unvegetated areas, with deeper water Paspalum repens stands harbouring the highest diversity. As a result, species richness and catches were positively related to habitat complexity, while catch was also negatively related to dissolved oxygen (DO) and water depth. Low DO and shallow waters appeared to act as a refuge from predation. Fish assemblages were related to water chemistry, but species richness was not. Canonical correspondence analysis provided evidence that floodplain fish assemblages formed by the 76 most common species were influenced by physical variables, macrophyte coverage and habitat complexity, which jointly accounted for 67% of the variance of fish species assemblages. Omnivores showed no pattern relative to the river channel to floodplain-interior gradient while detritivores were more likely to be found at interior floodplain sites and piscivores closer to the river. Piscivores could be further separated into three groups, one with seven species associated with free-floating macrophytes in deep water, a second with five species found in shallow waters with rooted grasses and a third with six open water orientated species. The results suggest that fish assemblages in the Amazon floodplain are not random associations of species.     

Habitat specialization in tropical continental shelf demersal fish assemblages

The implications of shallow water impacts such as fishing and climate change on fish assemblages are generally considered in isolation from the distribution and abundance of these fish assemblages in adjacent deeper waters. We investigate the abundance and length of demersal fish assemblages across a section of tropical continental shelf at Ningaloo Reef, Western Australia, to identify fish and fish habitat relationships across steep gradients in depth and in different benthic habitat types. The assemblage composition of demersal fish were assessed from baited remote underwater stereo-video samples (n = 304) collected from 16 depth and habitat combinations. Samples were collected across a depth range poorly represented in the literature from the fringing reef lagoon (1-10 m depth), down the fore reef slope to the reef base (10-30 m depth) then across the adjacent continental shelf (30-110 m depth). Multivariate analyses showed that there were distinctive fish assemblages and different sized fish were associated with each habitat/depth category. Species richness, MaxN and diversity declined with depth, while average length and trophic level increased. The assemblage structure, diversity, size and trophic structure of demersal fishes changes from shallow inshore habitats to deeper water habitats. More habitat specialists (unique species per habitat/depth category) were associated with the reef slope and reef base than other habitats, but offshore sponge-dominated habitats and inshore coral-dominated reef also supported unique species. This suggests that marine protected areas in shallow coral-dominated reef habitats may not adequately protect those species whose depth distribution extends beyond shallow habitats, or other significant elements of demersal fish biodiversity. The ontogenetic habitat partitioning which is characteristic of many species, suggests that to maintain entire species life histories it is necessary to protect corridors of connected habitats through which fish can migrate.     

Method-integrated fish assemblage structure at two spatial scales along a free-flowing stretch of the Austrian Danube

Fish assemblages in large rivers are highly diverse communities. However, a single method to describe these complex systems adequately is not available as of yet. In this paper we propose a combination of normalized catch-per-unit-effort data of three fish sampling methods, thus providing a more inclusive representation of the overall assemblage. We investigate fish species occurrence and abundance in a survey at three consecutive sites in the free-flowing main channel of the Austrian Danube east of Vienna. Using boat and wading electrofishing, as well as longline fishing we collected data in four mesohabitats at each site. We analysed richness, assemblage structure and abundance of single species and tested site and mesohabitat as differentiating forces on the fish assemblage structure, applying PERMANOVA and NMDS. The investigated sites are populated by a species-rich fish assemblage, of which we collected a total of 36 species. The composition of the assemblage was rather consistent except for the occasional occurrence of rare species. At the smaller mesohabitat scale, however, the assemblages differed considerably and hydromorphological conditions were apparently the major structuring force. Overall, the combination of methods considerably improves the assessment across sites and mesohabitats and contributes to our understanding of large river fish assemblages.     

Altitudinal gradients in stream fish diversity and the prevalence of diadromy in the Sixaola River basin,Costa Rica

Landscape-scale patterns of freshwater fish diversity and assemblage structure remain poorly documented in many areas of Central America, while aquatic ecosystems throughout the region have been impacted by habitat degradation and hydrologic alterations. Diadromous fishes may be especially vulnerable to these changes, but there is currently very little information available regarding their distribution and abundance in Central American river systems. We sampled small streams at 20 sites in the Sixaola River basin in southeastern Costa Rica to examine altitudinal variation in the diversity and species composition of stream fish assemblages, with a particular focus on diadromous species. A set of environmental variables was also measured in the study sites to evaluate how changes in fish assemblage structure were related to gradients in stream habitat. Overall, fish diversity and abundance declined steeply with increasing elevation, with very limited species turnover. The contribution of diadromous fishes to local species richness and abundance increased significantly with elevation, and diadromous species dominated assemblages at the highest elevation sites. Ordination of the sampling sites based on fish species composition generally arranged sites by elevation, but also showed some clustering based on geographic proximity. The dominant gradient in fish community structure was strongly correlated with an altitudinal habitat gradient identified through ordination of the environmental variables. The variation we observed in stream fish assemblages over relatively small spatial scales has significant conservation implications and highlights the ecological importance of longitudinal connectivity in Central American river systems.     

Hydrologic Connectivity Affects Fish Assemblage Structure,Diversity, and Ecological Traits in the Unregulated Gambia River,West Africa

The Gambia River of West Africa is a large unobstructed river, characterized by a natural flow regime and lateral connectivity across its floodplain. Construction of a major dam, however, is planned. We compared patterns of fish diversity, habitat use, assemblage structure, and the distribution of trophic position and body morphology in riverine and floodplain habitats in Niokolo Koba National Park, located downstream of the planned dam site. A total of 49 fish species were captured, revealing a lognormal distribution as expected for species‐rich assemblages. Fish species exhibited a range of habitat use patterns, from generalist to highly habitat‐specific, and appeared to migrate laterally among habitats between seasons. Species richness was homogenous among habitats in the wet season yet appeared to increase with isolation from the main river in the dry season. Fish assemblage structure was best explained by the interaction between habitat type and season, underlining the importance of the natural flow regime and lateral connectivity among floodplain habitats. The abundance of fishes having elongate bodies increased with isolation from the main channel in the wet season only. The distribution of fishes having compressed cross‐sectional morphology decreased with isolation from the main channel in the dry season only. These patterns of trait distribution support the conclusion that variation in hydrologic connectivity structures the fish assemblage. Our results suggest that altered flow regimes and loss of floodplain habitats after damming could lead to both decreased taxonomic and functional diversity of the fish assemblage.     

Relationships between fishes and habitat in rainforest streams in Sabah, Malaysia

Distinct fish assemblages were found at the mesohabitat scale in 14 streams in eastern Sabah, Malaysia. Sites were designated a priori as pool, run or riffle on the basis of physical habitat structure and properties. Principal components analysis of physical habitat data confirmed the validity of the a priori designation with a major axis of three correlated variables: water velocity, depth and substratum type. Canonical discriminant analysis on fish abundance and biomass data confirmed the existence of a specialized assemblage of fishes from riffle areas of all streams. Overall, pool and run assemblages were highly variable, dependent on stream size, but also variable between streams of the same size. Multiple regression of species richness, diversity, abundance and biomass data on principal components revealed significant but low correlations with measured habitat variables. Riffle habitats showed lower species richness and diversity but high abundance. The fish assemblage in riffles was dominated by balitorid species, specialized for fast-water conditions. Pool assemblages had the highest species diversity and were dominated by cyprinid species of a number of morphological and ecological guilds. Run assemblages were intermediate in assemblage characteristics between riffle and pool assemblages. Between-stream variation in assemblage composition was less than within-stream variation. Of 38 species collected, seven could be designated as riffle specialists, 18 as pool specialists and 13 as ubiquitous, although most of the latter showed size-specific habitat use with larger size classes found in slower, deeper water.     

Fish Assemblages in Different Shallow Water Habitats of the Venice Lagoon

The small-sized fish assemblages of the Venice Lagoon were investigated and compared among five shallow subtidal habitats (seagrass beds, sparsely vegetated habitats, unvegetated sand bottoms, mudflats and saltmarsh creeks) in the Northern lagoon basin. Sampling was carried out seasonally (Spring, Summer and Autumn of 2002) in 4–7 stations for each habitat type, by means of a fine-mesh, small beach seine. Two-way analysis of variance was applied to assess the differences in species richness, fish diversity, density and standing stock amongst habitats, whereas fish assemblage composition was investigated by using multivariate analyses (MDS, ANOSIM, SIMPER). The analyses indicated that seagrass beds and saltmarsh creeks are relevant shallow habitats in structuring the small-sized fish assemblages of the Venice Lagoon, supporting specialized and recognizable fish assemblages. Those in seagrass beds, in particular, were characterized by higher species richness and standing stock with respect to all the others. The structuring role of these habitats was discussed in terms of both habitat complexity and degree of confinement. In contrast, sandy bottoms, mudflats and sparsely vegetated habitats were identified as “transition” habitats, with highly variable fish assemblages, influenced by the contribution of the adjacent habitats, and acting probably as both ‘buffer zones’ between the other habitats and migration routes for many fish species in the lagoon.