簇毛麦染色体组特异性RAPD标记的筛选、定位和应用

以普通小麦中国春、中国春－簇毛麦二体附加系以及不同来源的簇毛麦为材料,用100个10碱基随机引物进行RAPD扩增。引物OPF02能在不同来源的簇毛麦及所有中国春－簇毛麦二体附加系中扩增出一条长约750bp的片段OPF02 750。普通小麦和硬粒小麦不能扩增出该片段。因此,OPF02 750为分布于簇毛麦所有染色体上的一个簇毛麦染色体组特异片段。用引物OPF02对普通小麦－簇毛麦双二倍体、硬粒小麦－簇毛麦双二倍体以及几个普通小麦的簇毛麦二体代换系、二体附加系进行检测,发现NAU302已经丢失了其所附加的簇毛麦3V染色体。     

筛选利用小麦微卫星标记追踪簇毛麦各条染色体

选用定位于普通小麦7个部分同源群上的276对微卫星引物对普通小麦中同春和簇毛麦的基因组DNA进行扩增分析,有148对引物可在两个物种间检测到多态性。利用上述显示多态性的引物进一步对7个中国春-簇毛麦二体附加系进行扩增分析,筛选出分别可用来追踪簇毛麦1V至7V染色体的引物wmc49（1BS）、wmc25（2BS）、gdm36（3DS）、gdml45（4AL）、wmc233（5DS）、wmc256（6AL）和gwm344（7BL）。此外还发现6DS上的微卫星引物gwm469可以用来追踪簇毛麦的2V染色体;2DS上的微卫星引物gdm107可用来追踪簇毛麦的6V染色体。进一步用涉及不同簇毛麦和小麦背景的小麦一簇毛麦染色体附加系、代换系和易位系进行扩增分析,这些微卫星标记也可用来鉴定簇毛麦的各条染色体。因此,这然簇毛麦染色体特异的微卫星标记可用来追踪普通小麦背景中的簇毛麦染色体。     

簇毛麦基因组特异性PCR标记的建立和应用

以普通小麦中国春、簇毛麦、中国春－簇毛麦二体附加系和代换系为材料进行RAPD分析,筛选出一个簇毛麦基因组特异性RAPD片段OPFO2757,该片段分布于簇毛麦所有染色体上。在对OPFO2757进行克隆、测序的基础上,设计一对PCR引物,建立了簇毛麦基因组特异性PCR标记。用这对PCR引物对不同普通小麦品种、不同硬粒小麦品种、不同居群的簇毛麦、中国春－簇毛麦二体附加系、中国春－簇毛麦二体代换系、普通小麦－簇毛麦双二倍体、硬粒小麦－簇毛麦双二倍体等材料进行扩增,凡具有簇毛麦染色体的材料都能扩增出一条长为677bp的DNA片段,而不具簇毛麦染色体的材料包括大麦、黑麦、长穗偃麦草、中间偃麦草等不能扩增出该片段。所以,该特异性PCR标记可用于快速跟踪检测小麦背景中的簇毛麦染色体。     

簇毛麦NBS类R基因相关序列的分子标记开发及其染色体定位

小麦近缘种簇毛麦携带许多尚未克隆的抗病(R)基因。NBS-LRR类型的R基因占已克隆植物R基因的绝大多数,因此,本研究根据NBS-LRR类型R基因的保守序列设计引物,从簇毛麦基因组DNA和cDNA中扩增获得23条相关序列。基于其中5条抗病基因同源序列(RGAs)H-56/d6、H-66/b2和CDS40设计引物,对小麦、簇毛麦、硬-簇双二倍体及其杂种以及已知携带个别簇毛麦染色体或染色体臂的小麦材料进一步进行PCR扩增,结果表明:3对引物均可对簇毛麦、硬-簇双二倍体进行特异扩增;同时,源于序列H-66/b2的引物可对1VL和6VL染色体臂进行特异扩增;源于序列CDS40的引物可在同时携带1VL和2VS或同时携带2VS和4V的小麦材料以及具有6VL的小麦材料中特异扩增,而H-56/d6的引物在携带1VL、2VS、4V和6V染色体臂或染色体的小麦背景中都不能获得目的片段的扩增。这些结果不仅为外源染色体臂在小麦背景中的追踪与鉴定提供了新的分子标记,而且这些标记还与外源染色体或染色体臂上的抗病基因或抗病基因同源物紧密连锁或共分离。     

小麦族中含St染色体组物种的特异分子标记的建立

以拟鹅观草(Pseudoroegneria spicata)、偏凸山羊草(Aegilops ventricosa)、二倍体簇毛麦(Dasypyrum villosum)、荆州黑麦(Secale cereale cv. Jingzhou rye)、普通小麦中国春(Chinese Spring)等15个物种为材料, 用200条10碱基随机引物进行RAPD分析, 筛选到拟鹅观草基因组中1个542 bp的特异DNA片段(GenBank登录号为DQ992032), 命名为OPH11542。根据OPH11542设计特异引物, 对小麦族物种进行PCR扩增, 发现拟鹅观草可以扩增出OPH11542以及分子量分别为742 bp (GenBank登录号为DQ992033, 记为OPH11742)和743 bp (GenBank登录号为EF014218, 记为OPH11743)的DNA片段, 而其他材料均未扩增出这3个片段。经序列比对结合多个软件的分析结果认为该3个片段为同一类新重复序列。利用特异引物对15份含St染色体的物种进行扩增, 发现含StY染色体组的物种均能扩增出OPH11742或OPH11743, 而含StH染色体组的物种均能扩增出OPH11542。这表明St染色体组在与其它染色体组组合形成多倍体的过程中往往会出现不同程度的重组或修饰。OPH11542、OPH11742和OPH11743可以作为检测St染色体的分子标记。     

簇毛麦及其与普通小麦杂种双二倍体的C一分带分析

本研究对簇毛麦(Haynaldia villosa),普通小麦“农大146" (Tritieum aestivum）及其产生的双 二倍体进行了C一分带分析,结果表明：(1) 7对簇毛麦染色体均可显示清晰的带型、根据带型可以把各 簇毛麦染色体与小麦染色体相互区别开来; (2)普通小麦一簇毛麦双二倍体的染色体数变幅在”-56 之间,其中2n - 5‘的个体占,7.680%     

小麦-簇毛麦种质系‘山农030713＇的细胞学和SSR鉴定

利用形态学、细胞学以及SSR标记技术对从硬簇麦和Am3的杂种后代中选育的种质系‘山农030713＇进行了鉴定,结果表明：种质系‘山农030713＇大田生长整齐一致,农艺性状较好,且对白粉病免疫;其根尖细胞染色体数目为2n=42,花粉母细胞减数分裂中期Ⅰ（PMC M Ⅰ）染色体构型为2n=21Ⅱ;它与普通小麦的杂种F1PMC MⅠ多数细胞中形成21个二价体,且常有四价体出现,可能伴有染色体的结构变异;SSR分析证明‘山农030713＇基本染色体组成为AABBDD,引物Xgwm99-1A在‘山农030713＇中扩增出簇毛麦的特异带,表明‘山农030713＇中有来自于簇毛麦的遗传物质,此特异带可作为识别‘山农030713＇的SSR标记.综合形态学、细胞学和SSR分析结果推测,‘山农030713＇可能是一个小麦-簇毛麦易位系.     

利用离果山羊草3C染色体诱导簇毛麦4V染色体结构变异

通过普通小麦农林26-离果山羊草3C异附加系与普通小麦-簇毛麦4V（4D）代换系杂交,杂交F1代与普通小麦回交,综合运用染色体构型分析、C-分带和荧光原位杂交等技术从BC1F2、BC1F3代中鉴定出涉及簇毛麦4V染色体的易位系、端体、等臂染色体系等变异植株,表明离果山羊草3C染色体可有效诱发簇毛麦4V染色体结构变异,是创造小麦-簇毛麦4V易位系的一种有效途径。     

拟鹅观草St基因组ISSR特异标记的建立

以拟鹅观草(Pseudoroegneria spicata)、中间偃麦草(Thinopyrum intermedium)、长穗偃麦草(Th.elonga-tum)、二倍体簇毛麦(Dasypyrum villosum)、澳冰草(Australopyrum retrofractum)等10份小麦族物种为材料,对100条ISSR引物进行分析,结果显示引物811可以在拟鹅观草(GenBank登录号为EU368859)和中间偃麦草中扩增出一条长441 bp的特异DNA片段命名为St441,而其它供试物种均未扩出.经序列比对、软件分析结合原位杂交结果认为St441为一类新的低拷贝重复序列.利用ISSR引物811对10份不同居群的中间偃麦草、20份披碱草属物种、4份小麦-偃麦草部分双二倍体、6份小麦-茸毛偃麦草后代和12份小麦对照进行扩增,结果发现除对照小麦外均能扩增出St441;进而对小麦-中间偃麦草两套附加系进行扩增,将St441初步定位于包括第四同源群在内的8条St染色体上.同时,发现只含有整条St染色体和St染色体片段的材料能扩增出St441,而仅有Js染色体的材料未扩增出St441.因此,该标记St441可以作为检测不同背景下St染色质的分子标记.     

7个大穗型小麦-黑麦代换系间杂交后代的形态学与SSR分析

对从小麦-黑麦代换系5R/5A与1R/1D杂交后代中选育的大穗型品系1-5、1-6、1-7、1-8、1-9、1-10、1-11进行形态学与SSR分析。结果表明,7个品系田间表现遗传性稳定,且具有黑麦大穗、抗病等优良性状;利用黑麦特异引物PSC119.1确定7个品系均导入了黑麦染色体片段,引物SCM138扩增结果表明,在1-6、1-7、1-8、1-9、1-10中导入了黑麦染色体5RS片段,引物SCM120、TSM604可以在7个品系中稳定扩增出黑麦5R长臂和1R短臂特异片段。以上结果可为小麦遗传育种与品质改良提供基础材料。     

Genomic relationships between Dasypyrum villosum (L.) Candargy and D. hordeaceum (Cosson et Durieu) Candargy.

The origin and genomic constitution of the tetraploid perennial species Dasypyrum hordeaceum (2n = 4x = 28) and its phylogenetic relationships with the annual diploid Dasypyrum villosum (2n = 2x = 14) have been investigated by comparing the two genomes using different methods. There is no apparent homology between the conventional or Giemsa C-banded karyotypes of the two Dasypyrum species, nor can the karyotype of D. hordeaceum be split up into two similar sets. Polymorphism within several chromosome pairs was observed in both karyotypes. Cytophotometric determinations of the Feulgen-DNA absorptions showed that the genome size of D. hordeaceum was twice as large as that of D. villosum. Both the cross D. villosum x D. hordeaceum (crossability rate 12.1%) and the reciprocal cross (crossability rate 50.7%) produced plump seeds. Only those from the former cross germinated, producing sterile plants with a phenotype that was intermediate between those of the parents. In these hybrids (2n = 21), an average of 13.77 chromosomes per cell paired at meiotic metaphase I. Trivalents were only rarely observed. Through dot-blot hybridizations, a highly repeated DNA sequence of D. villosum was found not to be represented in the genome of D. hordeaceum. By contrast, very similar restriction patterns were observed when a low-repeated DNA sequence or different single-copy sequences of D. villosum or two sequences in the plastidial DNA of rice were hybridized to Southern blots of the genomic DNAs of the two Dasypyrum species digested with different restriction endonucleases. By analyzing glutamic-oxaloacetic-transaminase, superoxide dismutase, alcohol dehydrogenase, and esterase isozyme systems, it was shown that both Dasypyrum species shared the same phenotypes, which differed from those found in hexaploid wheat. In situ hybridizations using DNA sequences encoding gliadins showed that these genes were located close to the centromere of three pairs of D. villosum chromosomes and that they had the same locations in six pairs of D. hordeaceum chromosomes. We conclude that the autoploid origin of D. hordeaceum from D. villosum, which cannot be defended on the basis of chromosomal traits, is suggested by the other findings obtained by comparing the two genomes. Key words : Dasypyrum hordeaceum, Dasypyrum villosum, phylogenetic relationships.     

Development of a set of compensating Triticum aestivum-Dasypyrum villosum Robertsonian translocation lines

Dasypyrum villosum (L.) Candargy, a wild relative of bread wheat ( Triticum aestivum L.), is the source of many agronomically important genes for wheat improvement. Production of compensating Robertsonian translocations (cRobTs), consisting of D. villosum chromosome arms translocated to homoeologous wheat chromosome arms, is one of the initial steps in exploiting this variation. The cRobTs for D. villosum chromosomes 1V, 4V, and 6V have been reported previously. Here we report attempted cRobTs for wheat - D. villosum chromosome combinations 2D/2V, 3D/3V, 5D/5V, and 7D/7V. The cRobTs for all D. villosum chromosomes were recovered except for the 2VS and 5VL arms. As was the case with the 6D/6V combination, no cRobTs involving 2D/2V chromosomes were recovered; instead, cRobT T2BS·2VL involving a nontargeted chromosome was recovered. All cRobTs are fertile, although the level of spike fertility and hundred kernel weight (HKW) varied among the lines. The set of cRobTs involving 12 of the 14 D. villosum chromosomes will be useful in wheat improvement programs. In fact, among the already reported cRobTs, T6AL·6VS carrying the Pm21 gene is deployed in agriculture and many useful genes have been reported on other cRobTs including resistance to stem rust race UG99 on T6AS·6VL.     

小麦-簇毛麦新种质山农05078的鉴定(简报)

簇毛麦（Dasypyrum villosum,VV,2n=14）属禾本科小麦族小麦亚族簇毛麦属,分蘖力比较强,多花,籽粒蛋白质含量高,耐旱,抗寒性好,高抗锈病、全蚀病和白粉病。硬簇麦（AABBVV,2n=42）是利用硬粒小麦和簇毛麦杂交人工合成的双二倍体,保留了簇毛麦的优良性状和特点,是进行小麦遗传改良的优良中间材料。人工合成小麦Am3（AABBDD,2n=42）是利用波斯小麦与粗山羊草杂交后染色体加倍而形成的双二倍体,但它所具有的A、B、D染色体组可能与经过多年分化的普通小麦所含的A、B、D染色体组不同,     

山东鹅观草SSR-PCR反应体系的优化和验证

山东鹅观草是一重要的小麦野生近缘种质资源,具有对黄矮病的高抗性和易于小麦杂交的高亲和性等优良性状.以CTAB法提取山东鹅观草叶片DNA为模板,进行反应PCR体系优化.选用20 μL的PCR 反应,对Mg2+浓度、dNTP浓度、引物、DNA模板和Taq酶5个因素设计5个水平进行体系优化和验证试验.先以1个SSR标记(Xgwm43-7B )对5个因素进行筛选.为了验证所选最优体系的稳定性,再选用9个SSR标记(Xgwm18-1B、Xgwm32-3A、Xgwm6-4B、Xgwm60-7A、Xgwm67-5B、Xgwm77-3B、Xgwm88-6B、Xgwm95-2A和Xgwm99-1A)进行验证性试验.单因素试验结果表明PCR反应最佳体系为:20 μL 反应体系,2μL的 10×PCR Buffer,2.875mmol/L 的Mg2+,200μmol/L 的dNTP,3 pmol的引物,45 ng的模板DNA,1.5 U的 Taq 聚合酶,双蒸水以补足20 μL反应体系.验证性试验结果表明该反应体系有一定通用性,但扩增效果及PCR产量有差异.     

Cytogenetics of Triticum x Dasypyrum hybrids and derived lines

Genomic in situ hybridization was used to study Triticum x Dasypyrum wide hybrids and derived lines. A cytogenetic investigation was carried out in progenies of (i) amphiploids derived from T. turgidum var. durum (T. durum; 2n = 14; genomes AABB) x D. villosum (2n = 14; genome VV), (ii) three-parental hybrids (T. durum x D. villosum) x T. aestivum (2n = 42, genomes A'A'B'B'D'D'), and (iii) T. aestivum aneuploid lines carrying D. villosum chromosomes or chromatin. The amphiploids derived from T. durum x D. villosum showed a stable chromosomal constitution, made up of 14 V chromosomes, 14 chromosomes carrying the wheat A genome and 14 chromosomes carrying the B genome. High karyological instability was observed in the progenies of three-parental hybrids ([T. durum x D. villosum] x T. aestivum). Plants having the expected 14 A chromosomes, 14 B chromosomes, 7 D chromosomes, and 7 V chromosomes were rather rare (4.5%). Many progeny plants (45.5%) had the hexaploid wheat genome with 42 chromosomes and lacked any detectable D. villosum chromatin. Other plants (50%) had 14 A chromosomes and 14 B chromosomes, plus variable numbers of D and V chromosomes, the former being better retained than the latter in most cases. Some T. aestivum lines carrying D. villosum chromosomes or chromatin, as the result of addition, substitution, or recombination events or even a combination of these karyological events, were found to be stable. Other lines were unstable, and these lines carried 1V, 3V, or 5V chromosomes or their portions. Substitution or recombination events where 1V chromosomes were involved could concern the homeologous counterparts in both the A and B and D genomes of wheat. No line could be recovered where the shorter arm of 3V chromosomes was present. Changes in the morphology and banding pattern of V chromosomes were observed in hybrids that did not carry the entire D. villosum complement. By comparing the results of our cytogenetic analyses with certain phenotypic characteristics of the lines studied, genes for discrete traits could be assigned to specific V chromosomes or V chromosome arms. From the frequency of V chromosomes that were involved in chromatin exchanges with or substituted for one of their homeologous counterparts in the A, B, and D wheat genomes, it was inferred that D. villosum belongs to the same phyletic lineage as T. urartu (donor of the A genome of wheat) and Aegilops speltoides (B genome), and that Ae. squarrosa (D genome) diverged earlier from D. villosum.     

小麦细胞分裂间期外源染色质的检测

以野生种基因组ＤＮＡ为探针，用荧光原位杂交研究了间期细胞核里黑麦，中间偃麦草，燕麦和簇毛染色体在普通小麦背景下的行为，易位的黑麦１ＲＳ染色体襞在间期表现为不连续的线状杂交信号贯穿细胞核，代换和附加的１Ｒ染色体在间期却呈现点状杂交信号，通过易位进入小麦的中间偃麦草和燕麦染色体片段也是点状。     

Studies on genome relationship and species-specific PCR marker for Dasypyrum breviaristatum in Triticeae

Dasypyrum breviaristatum and nine related species in Triticeae were analyzed using the random amplified polymorphic DNA (RAPD) technique, in order to understand the genetic relationship and to develop species specific markers. The genome relationship dendrogram shows that D. breviaristatum and D. villosum could not be grouped together, indicating that D. breviaristatum was unlikely to be directly derived from D. villosum, while D. breviaristatum was closest to Thinopyrum intermedium, which implied that they might have similar breeding behaviors when introducing their chromatins into wheat. A D. breviaristatum genome specific RAPD product of 1182bp, was cloned and designated as pDb12H. Sequence analysis revealed that pDb12H was strongly homologuos to a long terminal repeat (LTR) Sabrina retrotransposon newly reported in Hordeum. The pDb12H was converted into a PCR based marker, which allows effectively monitoring the D. breviaristatum chromatin introgression into wheat. Fluorescence in situ hybridization (FISH) suggested that pDb12H was specifically hybridized throughout all D. breviaristatum chromosomes arms except for the terminal and centromeric regions, which can be used to characterize wheat -D. breviaristatum chromosome translocation. The genomes repetitive element will also be useful to study gene interactions between the wheat and alien genomes after the polyploidization.     

The use of microsatellites for detecting DNA polymorphism, genotype identification and genetic diversity in wheat

A set of 20 wheat microsatellite markers was used with 55 elite wheat genotypes to examine their utility (1) in detecting DNA polymorphism, (2)in the identifying genotypes and (3) in estimating genetic diversity among wheat genotypes. The 55 elite genotypes of wheat used in this study originated in 29 countries representing six continents. A total of 155 alleles were detected at 21 loci using the above microsatellite primer pairs (only 1 primer amplified 2 loci; all other primers amplified 1 locus each). Of the 20 primers amplifying 21 loci, 17 primers and their corresponding 18 loci were assigned to 13 different chromosomes (6 chromosomes of the A genome, 5 chromosomes of the B genome and 2 chromosomes of the D genome). The number of alleles per locus ranged from 1 to 13, with an average of 7.4 alleles per locus. The values of average polymorphic information content (PIC) and the marker index (MI) for these markers were estimated to be 0.71 and 0.70, respectively. The (GT)_n microsatellites were found to be the most polymorphic. The genetic similarity (GS) coefficient for all possible 1485 pairs of genotypes ranged from 0.05 to 0.88 with an average of 0.23. The dendrogram, prepared on the basis of similarity matrix using the UPGMA algorithm, delineated the above genotypes into two major clusters (I and II), each with two subclusters (Ia, Ib and IIa, IIb). One of these subclusters (Ib) consisted of a solitary genotype (E3111) from Portugal, so that it was unique and diverse with respect to all other genotypes belonging to cluster I and placed in subcluster Ia. Using a set of only 12 primer pairs, we were able to distinguish a maximum of 48 of the above 55 wheat genotypes. The results demonstrate the utility of microsatellite markers for detecting polymorphism leading to genotype identification and for estimating genetic diversity. Received: 15 May 1999 / Accepted: 27 July 1999     

Molecular cytogenetic analysis of intergeneric chromosomal translocations between wheat (Triticum aestivum L.) and Dasypyrum villosum arising from tissue culture.

Fluorescence in situ hybridization (FISH) was applied with total genomic DNA extracted from Dasypyrum villosum (L.) Candargy as a probe to characterize chromosome translocations arising from tissue culture in hybrids of Triticum aestivum x (T. durum - D. villosum, amphiploid). Chromosome translocations between wheat and D. villosum occurred in callus cells at an average frequency of 1.9%. Translocations existed not only in callus cells but also in regenerants. Three plants with translocation chromosomes were characterized among 66 regenerants of T. aestivum 'Chinese Spring' x 'TH1W' and 'NPFP' x 'TH1'. One of them proved to be a reciprocal translocation with an exchange of about one third of a wheat chromosome arm with about one half of a chromosome arm of D. villosum. The breakpoints of the other two translocations were located at, or near centromeres. The results are similar for both callus cells and regenerants and provide further evidence that translocations take place in tissue culture. Other structural chromosomal changes, for example, fragments, telocentrics, dicentromeres, and deletions, as well as numerical alterations including aneuploidy and polyploidy were recorded both in callus cells and regenerants.