Distribution and abundance of a keystone tree, <Emphasis Type="Italic">Schinziophyton rautanenii</Emphasis>, and factors affecting its structure in Zambia,southern Africa

Schinziophyton rautanenii is a keystone tree species whose fruits are eaten by wildlife and livestock, nuts are used to extract oil for human use and its wood is used for making curios that are sold to tourists. The species occurs in southern African countries of Angola, Namibia, Botswana, Mozambique, Zambia, Zimbabwe and the Democratic Republic of Congo but little is known about its population and conservation status. The objectives of this study were to (i) assess factors determining the distribution and abundance of the species in Zambia, (ii) evaluate its regeneration potential and population status and (iii) assess whether the main determinants of forest and species stand structures also favour S. rautanenii. The study is based on three forest surveys conducted in 2004, 2005–2008 and 2015. In Zambia S. rautanenii abundance and population structure are controlled by soil, climate and human factors. The species is most abundant in southwest Zambia where population recruitment is good but is rare and recruitment is poor elsewhere in the country. Fire appears to be a major cause of tree damage and possibly death. The elephant is a major disperser of S. rautanenii nuts and the low recruitment levels in the country may partly be attributed to the decline in the elephant population from about 250,000 in 1960 to 28,000 in 2008. Different conservation strategies will be required for areas where the species is rare and for those where the species is abundant. Whatever the strategies, it will be important to address issues of fire management, fruit harvesting and the role of wildlife in the conservation of S. rautanenii in Zambia.     

Genetic structure of cultivated <Emphasis Type="Italic">Zanthoxylum</Emphasis> species investigated with SSR markers

Zanthoxylum is an economically and ecologically important genus of the Rutaceae family, of which Z. bungeanum and Z. armatum have a long history of cultivation in China. However, how the natural processes such as selection and drift and agriculture practices have influenced the genetic variation of cultivated Zanthoxylum species during long-term domestication remains elusive. Herein, we determined the population genetic structure of current widely cultivated Zanthoxylum species, Z. bungeanum and Z. armatum. Microsatellite markers revealed a high level of genetic variation and significant genetic differentiation for both species despite Z. bungeanum showed higher genetic diversity than Z. armatum. AMOVA indicated that most of the genetic variation exists within individuals rather than among provenances for both species. Population structure analyses generated three distinct groups within the entire accessions. All Z. bungeanum accessions were distinguished into two major geographic groups, north and south groups, with Qinling Mountains as the main geographic barrier to gene flow while a significant genetic differentiation was observed between cultivated and wild Z. armatum accessions. Mantel test of Z. bungeanum displayed a significant correlation between genetic and geographic distances within each inferred group but no correlation between genetic and geographic distance was observed when comparing genetic and geographic distances focusing only on pairwise of north vs. south provenances, ruling out the hypothesis that gene flow between north and south provenances followed an isolation-by-distance model. Our research provided a fundamental genetic profile that will improve the conservation and responsible exploitation of the extant germplasm of Zanthoxylum.     

Identification of 21 novel <Emphasis Type="Italic">S-RNase</Emphasis> alleles and determination of <Emphasis Type="Italic">S</Emphasis>-genotypes in 66 loquat (<Emphasis Type="Italic">Eriobotrya</Emphasis>) accessions

As observed in other self-incompatible species in the Pyrinae subtribe, loquat (Eriobotrya japonica) demonstrates gametophytic self-incompatibility that is controlled by the S-locus, which encodes a polymorphic stylar ribonuclease (S-RNase). This allows the female reproductive organ (style) to recognize and reject the pollen from individuals with the same S-alleles, but allows the pollen from individuals with different S-alleles to effect fertilization. The S-genotype is therefore an important consideration in breeding strategies and orchard management. In an attempt to optimize the selection of parental lines in loquat production, the S-RNase alleles of 35 loquat cultivars and their 26 progeny, as well as five wild loquat species, were identified and characterized in this study. The best pollinizer cultivar combinations were also explored. A total of 28 S-alleles were detected, 21 of which constituted novel S-RNase alleles. The S-haplotypes S₂ and S₆ were the most frequent, followed by S ₂₉ , S ₃₁ , S ₅ , S ₂₄ , S ₂₈ , S ₃₃ , S ₃₄ , S ₃₂ , and S ₁₅ , while the rare alleles S ₁ , S ₉ , S ₁₄ , S ₁₆ , S ₁₇ , S ₁₈ , S ₁₉ , S ₂₀ , S ₂₁ , S ₂₂ , S ₂₃ , S ₂₇ , and S ₃₅ were only observed in one of the accessions tested. Moreover, the S-genotypes of five wild loquat species (E. prinoides, E. bengalensis, E. prinoides var. dadunensis, E. deflexa, and E. japonica) are reported here for the first time. The results will not only facilitate the selection of suitable pollinators for optimal orchard management, but could also encourage the crossbreeding of wild loquat species to enhance the genetic diversity of loquat cultivars.     

Facilitation of plant species richness and endangered species by a tussock grass in a moist tall grassland revealed using hierarchical Bayesian analysis

Using hierarchical Bayesian analysis, we tested the hypothesis that a perennial tussock grass, Ischaemum aristatum var. glaucum, facilitates the species diversity of vegetation and the regeneration of individual native vascular plants in Ukishima Marsh, a moist tall grassland of eastern Japan. We analyzed microscale distribution patterns of sympatric plant species in response to ground height. Both the species richness of the whole plant assemblage and the occurrence of many native vascular plants, including two endangered species, were positively correlated with ground elevation, which was directly mediated by I. aristatum var. glaucum tussocks and/or the occurrence of mosses on tussocks. Susceptibility to late spring inundation of microsites on the tussocks was significantly lower than that on bare ground. These results suggest that the facilitation by I. aristatum var. glaucum contributes to maintaining the high species richness of the marsh. Consideration of the facilitation among native vascular plants is necessary for establishing sound conservation plans of wetland vegetation.     

A re-evaluation of diversity of the Aporocotylidae Odhner, 1912 in <Emphasis Type="Italic">Siganus fuscescens</Emphasis> (Houttuyn) (Perciformes: Siganidae) and associated species

The aporocotylid fauna of the mottled spinefoot, Siganus fuscescens (Houttuyn), from Moreton Bay, Queensland, Australia, was characterised using a combined morphological and molecular approach. Four aporocotylid species were identified, three belonging to the genus Ankistromeces Nolan & Cribb, 2006 and one to Cardicola Short, 1953. Specimens of Cardicola matched an undescribed species from the same host and locality; this species is described as Cardicola mogilae n. sp. Phylogenetic analyses of ITS2 and 28S data showed that C. mogilae n. sp. forms a strongly supported clade with other Cardicola species from siganid fishes. We record Ankistromeces olsoni Nolan & Cribb, 2006 in Moreton Bay for the first time, redescribe A. dunwichensis Nolan & Cribb, 2006 on the basis of new specimens and sequence data and re-report Ankistromeces sp. X from Moreton Bay based on molecular data. We review the status of the ten putative species of aporocotylids reported from siganids. Small variation in ITS2 rDNA sequences, in association with different geographic localities, was previously used to separate Cardicola lafii Nolan & Cribb, 2006 from C. parilus Nolan & Cribb, 2006, C. bartolii Nolan & Cribb, 2006 from C. watsonensis Nolan & Cribb, 2006, C. tantabiddii Nolan & Cribb, 2006 from Cardicola sp. 2, Ankistromeces sp. Y from A. olsoni and Ankistromeces sp. X from Ankistromeces sp. Z. These five combinations are reinterpreted as each representing a single species; Cardicola lafii is recognised as the senior synonym of C. parilus and C. bartolii as the senior synonym of C. watsonensis. This study thus suggests that six, rather than ten, species should be recognised as infecting S. fuscescens. This richness remains greater than is known for any other fish species and siganids are, so far, unique among fishes in harbouring two strongly radiated lineages of aporocotylids.     

Study of biological communities subject to imperfect detection: bias and precision of community <Emphasis Type="Italic">N</Emphasis>-mixture abundance models in small-sample situations

Community N-mixture abundance models for replicated counts provide a powerful and novel framework for drawing inferences related to species abundance within communities subject to imperfect detection. To assess the performance of these models, and to compare them to related community occupancy models in situations with marginal information, we used simulation to examine the effects of mean abundance \((\bar{\lambda }\): 0.1, 0.5, 1, 5), detection probability \((\bar{p}\): 0.1, 0.2, 0.5), and number of sampling sites (n _site : 10, 20, 40) and visits (n _visit : 2, 3, 4) on the bias and precision of species-level parameters (mean abundance and covariate effect) and a community-level parameter (species richness). Bias and imprecision of estimates decreased when any of the four variables \((\bar{\lambda }\), \(\bar{p}\), n _site , n _visit ) increased. Detection probability \(\bar{p}\) was most important for the estimates of mean abundance, while \(\bar{\lambda }\) was most influential for covariate effect and species richness estimates. For all parameters, increasing n _site was more beneficial than increasing n _visit . Minimal conditions for obtaining adequate performance of community abundance models were n _site  ≥ 20, \(\bar{p}\) ≥ 0.2, and \(\bar{\lambda }\) ≥ 0.5. At lower abundance, the performance of community abundance and community occupancy models as species richness estimators were comparable. We then used additive partitioning analysis to reveal that raw species counts can overestimate β diversity both of species richness and the Shannon index, while community abundance models yielded better estimates. Community N-mixture abundance models thus have great potential for use with community ecology or conservation applications provided that replicated counts are available.     

<Emphasis Type="Italic">Pinus contorta</Emphasis> invasion into treeless steppe reduces species richness and alters species traits of the local community

Pinus contorta, one of the most invasive tree species in the world, has been proposed as a model species for improving our understanding of invasion ecology. In this study, we assessed the impact of P. contorta invasions on the species richness, diversity and species traits of a resident treeless steppe community. In a Pinus contorta invasion gradient (Patagonia, Chile), we surveyed vegetation from high canopy closure pine invasion to treeless steppe, and computed species richness, diversity and Sørensen similarity indexes. For all species, we determined functional trait values from the literature, data bases, and personal observations. Species richness and diversity were related to canopy cover (a proxy for invasion intensity) using generalized linear mixed-effects models. Changes in species traits due to canopy cover were analyzed using RLQ ordination analysis and the fourth-corner analysis. We found that Pinus contorta canopy cover significantly reduced the number of native species by 70 %, implying a strong effect on species exclusion. A few native species, however, prevail in the novel conditions (e.g. Baccharis magellanica, Acaena integerrima). Species traits changed significantly with increasing pine canopy cover, where P. contorta promoted the existence of traits related to shade-tolerance and conservative reproductive strategies. We conclude that the negative impacts of Pinus contorta into the treeless steppe, including a reduction in the number of species and the shifting to traits adapted to tolerate shade and associated with conservative reproductive strategies, can have severe implications for the conservation of biodiversity and ecosystem functioning where it invades.     

<Emphasis Type="Italic">Stemodia perfoliata</Emphasis> (Plantaginaceae): A 200 year old new species from the Caatinga of Minas Gerais,Brazil

A new species of Stemodia (Plantaginaceae) from the Caatinga of northern Minas Gerais, Brazil, is described and illustrated. Stemodia perfoliata was first collected by Auguste de Saint-Hilaire, ca. 200 years ago, and remained unnamed until now. The new species is characterized by the connate-perfoliate leaves, a unique feature in the genus. We provide notes on morphology, geographic distribution and conservation status of S. perfoliata, along with a key to differentiate it from the similar species that occur in Brazil: S. durantifolia, S. hyptoides, S. maritima, S. palustris and S. stricta.     

Phylogenetic conservation prioritization with uncertainty

We consider a set of species S and are interested in the assessment of the subsets of S from a phylogenetic diversity viewpoint. Several measures can be used for this assessment. Here we have retained phylogenetic diversity (PD) in the sense of Faith, a measure widely used to reflect the evolutionary history accumulated by a group of species. The PD of a group of species X included in S is easy to calculate when the phylogenetic tree associated with S is perfectly known but this situation is rarely verified. We are interested here in cases where uncertainty regarding the length of branches and the topology of the tree is reflected in the fact that several phylogenetic trees are considered to be plausible for the set S. We propose several measures of the phylogenetic diversity to take account of the uncertainty arising from this situation. A natural problem in the field of biological conservation is to select the best subset of species to protect from a group of threatened species. Here, the best subset is the one that optimizes the proposed measures. We show how to solve these optimal selection problems by integer linear programming. The approach is illustrated by several examples.     

A new <Emphasis Type="Italic">Comanthera</Emphasis> (Eriocaulaceae) from the Espinhaço Range,Minas Gerais,Brazil

We describe and illustrate the new species Comanthera brunnea (Eriocaulaceae: Paepalanthoideae). This species is endemic to the sandy fields of the campos rupestres of the northeastern Espinhaço range in Minas Gerais, Brazil. We compare it with Comanthera suberosa, the morphologically most similar species, and with C. brasiliana, which also has similar features. The morphological variation, habitat, geographic distribution, and conservation status of this new species are discussed.     

Geographic distribution,habitat characterization,and conservation status of <Emphasis Type="Italic">Bolboschoenus</Emphasis> bulrushes (Cyperaceae) in the Hudson River Estuary,USA

Bulrushes of the genus Bolboschoenus are robust, ecologically important sedges occurring in wetlands, including intertidal marshes and mudflats. Despite their importance and multiple serious threats to their habitats, estuarine Bolboschoenus species remain poorly known. We conducted herbarium and field research in order to document historic and current geographic distributions, characterize the habitats, and assess the conservation status of Bolboschoenus species in the Hudson River Estuary, New York, U.S.A. Three species of Bolboschoenus grow in intertidal zones in the Hudson Estuary. Bolboschoenus fluviatilis occurs in the northern, upstream, and freshwater portion of the estuary with multi-year mean surface salinities of 0.078–2.0 ppt. Bolboschoenus robustus occupies the southernmost, downstream, and brackish to saline portion of the estuary with salinities of 4.9–16 ppt. Bolboschoenus novae-angliae occurs in the slightly to strongly brackish region between the other two species with salinities of 1.8–8.0 ppt. The geographic ranges of B. fluviatilis and B. robustus do not overlap, but B. novae-angliae has short zones of sympatry with each of the other two species. Syntopy of B. novae-angliae with each of the other two species is rare. In the Hudson Estuary, B. fluviatilis is secure, but B. novae-angliae and B. robustus are critically imperiled. Threats to future survival of Bolboschoenus species in the Hudson Estuary include competition from invasive plant species (especially Phragmites australis), eutrophication resulting from excess nutrient pollution, and habitat destruction. Our data and analyses provide critical new information for management of existing environmental problems and planned habitat restoration efforts in the Hudson River Estuary.     

New and little known crickets of the subfamily phalangopsinae (Orthoptera,Gryllidae): 5. Neotropical taxa of the tribe Paragryllini

One new genus, two new subgenera, and eight new species from Ecuador, Brazil, and Venezuela are described. The former genus Hattersleya Nischk et Otte is considered as a subgenus of the genus Neoacla Des. Acla multivenosa Chop., A. reticulata Chop., A. vicina Chop., Selvacla choreutes Otte, S. salvator Otte, S. alsiosus Otte, and S. sophos Otte are transferred to the genus Neoacla, and Desutteria epiplatys Nischk et Otte, to the genus Silvastella Des.-Gr. New data on the geographical and ecological distribution of some species are given.     

Growth and biochemical analysis of evergreen haloxeric tree species <Emphasis Type="Italic">Salvadora oleoides</Emphasis> and <Emphasis Type="Italic">Salvadora persica</Emphasis> under NaCl stress

In vitro growth, development, total soluble proteins and peroxidase profiles of Salvadora oleoides and Salvadora persica under NaCl stress were analysed in the present investigation. The plants are evergreen haloxeric tree species of family Salvadoraceae. Shoot apex from natural plants were initially used for screening of NaCl tolerance on MS culture medium. Shoot apex of S. oleoides and S. persica could survive optimally up to 200 and 100 mM NaCl. Axillary buds from nodal shoot segments of S. oleoides and S. persica were activated on 6 and 4 μM BAP, and were used further for extraction of total soluble proteins and peroxidases. Total soluble proteins were increased up to 150 mM NaCl in S. oleoides, but decline above 50 mM NaCl in S. persica. Peroxidase activity remained almost constant in S. oleoides at all the concentrations and duration of NaCl, but increased at 100 mM NaCl during fourth week of treatment in S. persica. Eleven peroxidase isozymes were observed in zymogram of S. oleoides. Isozymes P1, P2, P3, and P4 were slightly appeared, but P6 isozyme was lacking in S. persica. The P5 isozyme was more prominent in S. persica than S. oleoides. Isozyme P9 of S. persica was visible during the first week of NaCl treatment, but disappeared in the fourth week. Molecular biology of these plants can be useful further for the understanding of stress tolerance mechanisms for prospects.     

Demands of eicosapentaenoic acid (EPA) in <Emphasis Type="Italic">Daphnia</Emphasis>: are they dependent on body size?

Fatty acids contribute to the nutritional quality of the phytoplankton and, thus, play an important role in Daphnia nutrition. One of the polyunsaturated fatty acids (PUFAs)––eicosapentaenoic acid (EPA)––has been shown to predict carbon transfer between primary producers and consumers in lakes, suggesting that EPA limitation of Daphnia in nature is widespread. Although the demand for EPA must be covered by the diet, the demand of EPA in Daphnia that differ in body size has not been addressed yet. Here, we hypothesize that the demand for EPA in Daphnia is size-dependent and that bigger species have a higher EPA demand. To elucidate this, a growth experiment was conducted in which at 20 °C three Daphnia taxa (small-sized D. longispina complex, medium-sized D. pulicaria, and large-bodied D. magna) were fed Synechococcus elongatus supplemented with cholesterol and increasing concentrations of EPA. In addition, fatty acid analyses of Daphnia were performed. Our results show that the saturation threshold for EPA-dependent growth increased with increasing body size. This increase in thresholds with body size may provide another mechanism contributing to the prevalence of small-bodied cladocera in warm habitats and to the midsummer decline of large cladocera in eutrophic water bodies.     

Aquatic Oligochaeta (Annelida) of Balıkdamı wetland (Turkey), with description of two new species of Phallodrilinae

The Bal?kdam? Wetland, an impoundment of the upper course of the Sakarya River located near Sivrihisar (Eski?ehir, Central Anatolia), is one of the most important bird conservation areas in Turkey. This area also encompasses the mouth of the torrential Göksu Stream, which is partly hyporheic. During this study (2001–2003), 1,471 specimens representing 34 taxa of aquatic Oligochaeta were collected from the Bal?kdam? Wetland. All the species identified are new records for Bal?kdam?. Two species, Coralliodrilus amissus sp. n. and Gianius anatolicus sp. n., are new to science, and five species, Stylodrilus parvus (Hrabě et ?ernosvitov, 1927), Chaetogaster diastrophus (Gruithuisen, 1828), Peipsidrilus libanus (Giani et al., 1982), Tubifex acuticularis Martinez-Ansemil et Giani, 1983, and Epirodrilus moubayedi Giani et Martinez-Ansemil, 1983, are new records for Turkey. Two other species, Peipsidrilus libanus and Tubifex acuticularis, are re-described. The oligochaete fauna of the wetland was dominated by widely distributed tubificid taxa. The lumbriculid Stylodrilus parvus was the most abundant species in the Göksu stream. The two new phallodriline species are remarkable since most representatives of this subfamily live in the marine environment. Due to the species richness and diversity of Oligochaeta, as well as of several other animal groups, the Bal?kdam? wetland area deserves conservation.     

Exotic tree monocultures play a limited role in the conservation of Atlantic Forest epiphytes

The Brazilian Atlantic Forest suffered a severe geographic contraction along the last five centuries that reduced drastically most vascular epiphyte populations. Among the range of man-made matrixes, tree monocultures have the potential to contribute positively to the maintenance of the regional epiphyte diversity. Here, we test the similarity in abundance, richness, and species composition between vascular epiphytic communities established in managed monocultures of exotic and native species with natural communities occurring in neighboring native Araucaria Forest patches. In the São Francisco de Paula National Forest (Rio Grande do Sul state, Brazil), we recorded 62 epiphyte species from 300 phorophytes occurring in 12, one-hectare plots of Araucaria Forest and managed plantations of Pinus, Eucalyptus and Araucaria. Species richness, rarefied richness and abundance were significantly higher in Araucaria Forest in comparison to the exotic stands. Species composition was also substantially differentiated as Araucaria Forest patches harbored a greater number of zoochorous species than those of the exotic stands. Additionally, plantations of Araucaria angustifolia, a native species, sustained more individuals and more species than the exotic plantations. Neither tree height nor DBH explained epiphyte richness; however, both phorophyte diversity and stand age together accounted for 92% of the among-site variation in epiphytic species richness. We conclude that substrate heterogeneity in combination with time available for colonization contribute significantly to beta-diversity of epiphytes in Araucaria forests. However, demographic experimental studies are necessary in order to disentangle the role of substrate quality from metapopulation processes, such as dispersal limitation, at both temporal and spatial scales.     

Influential environmental gradients and patterns of fish assemblages in a West African basin

Twenty-two sites were monitored in the Lower Sassandra River Basin (Côte d’Ivoire, West Africa) to examine patterns in fish species assemblage structure along environmental gradients. Hierarchical clustering of the species presence–absence data identified four types of assemblages corresponding to the man-made Lake Buyo, the main channel, and the two major tributaries. Canonical Correspondence Analysis (CCA) indicated that canopy closure, leaves-wood, aquatic plants, temperature, width, total dissolved solids and depth were the environmental factors most strongly correlated with variation in the fish assemblages. Five species: Papyrocranus afer, Micralestes elongatus, Parailia pellucida, Tilapia busumana and T. mariae were reported from the basin for the first time. The investigation of the variation in species richness led to the assessment of a major anthropogenic disturbance induced by a palm oil factory. In conjunction with the fact that the Sassandra River hosts an endemic species, Synodontis koensis, it was concluded that this basin is of high conservation priority.     

Performance of two alpine plant species along environmental gradients in an alpine meadow ecosystem in central Tibet

Understanding how biotic interactions and abiotic conditions affect plant performance is important for predicting changes in ecosystem function and services in variable environments. We tested how performances of Astragalus rigidulus and Potentilla fruticosa change along gradients of biotic interactions (represented by plant species richness, abundance of the dominant plant species Kobresia pygmaea, and herbivory intensity) and abiotic conditions (represented by elevation, aspect, and slope steepness) across a semi-arid landscape in central Tibet. Redundancy analyses showed that the biotic variables explained 30 and 39 % of the variation in overall performance of A. rigidulus (P = 0.03) and P. fruticosa (P = 0.01), respectively. Abiotic variables did not contribute significantly to variation among A. rigidulus populations. Plant size decreased with species richness in both species and was larger on south- rather than north-facing slopes. Reproductive effort for both species was significantly negatively related to the abundance of K. pygmaea and both species had larger reproductive effort on south- rather than north- and west-facing slopes. The proportion of biomass allocated to sexual reproduction in P. fruticosa was negatively correlated with K. pygmaea abundance and herbivory intensity. The population density of P. fruticosa was positively related to elevation, species richness, and K. pygmaea abundance. We conclude that plant performance at a local scale was more strongly related to biotic than abiotic conditions, but different components of plant performance responded differently to predictor variables and the responses were species-specific. These findings have important implications for rangeland management under changing environmental conditions.