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1.
1. The most straightforward way to assess diversity in a site is the species count. However, a relatively large sample is needed for a reliable result because of the presence of many rare species in rich assemblages. The use of richness estimation methods is suggested by many authors as a solution for this problem in many cases.
2. We examined the performance of 13 methods for estimating richness of stream macroinvertebrates inhabiting riffles both at local (stream) and regional (catchment) scales. The evaluation was based on (1) the smallest sub-sample size needed to estimate total richness in the sample, (2) constancy of this size, (3) lack of erratic behaviour in curve shape and (4) similarity in curve shape through different data sets. Samples were from three single stream sites (local) and three from several streams within the same catchment basin (regional). All collections were made from protected forest areas in south-east Brazil.
3. All estimation methods were dependent on sub-sample size, producing higher estimates when using larger sub-sample sizes. The Stout and Vandermeer method estimated total richness in the samples with the smallest sub-sample size, but showed some erratic behaviour at small sub-sample sizes, and the estimated curves were not similar among the six samples. The Bootstrap method was the best estimator in relation to constancy of sub-sample sizes, but needed an unacceptably large sub-sample to estimate total richness in the samples. The second order Jackknife method was the second best estimator both for minimum sub-sample size and constancy of this size and we suggest its use in future studies of diversity in tropical streams. Despite the inferior performance of several other methods, some produced acceptable results. Comments are made on the utility of using these estimators for predicting species richness in an area and for comparative purposes in diversity studies.  相似文献   

2.
1. It is important for species recovery and conservation management projects to know the minimum viable population size for rare and endangered species, such as the medicinal leech, Hirudo medicinalis. Therefore, using a catch‐removal method, this study estimated every two years (1986, 1988, 1990, 1992) the total number of medicinal leeches in a tarn in the English Lake District, and the number of mature adults in the population. 2. Four samples were taken each year in June and July, when water temperatures exceeded 20 °C. Population size was estimated both by maximum likelihood and regression methods. All leeches were weighed alive and size groups were separated by polymodal frequency analysis. A small sample of the blood meal in each leech gut was taken before the leeches were returned to the tarn, and was used to estimate the proportion of mammalian and non‐mammalian blood in the meals. 3. Both methods of estimation produced similar values, increasing confidence in the population estimates. Values for the total population in June and July varied among years from 248 to 288, the maximum value being only 16% higher than the minimum. Values for the number of mature leeches varied from 48 to 58 (19–20% of the total population), and this was an estimate of the effective population size. 4. There were four size groups. The largest mature leeches (live weight >5 g) in group IV formed only 1% of the population, and the smallest (0.02–0.5 g) in group I 14–17%. Most leeches were in two overlapping groups of immature (64–67% of population) and mature (18%) leeches with size ranges of 0.4–3.4 g and 2.5–5 g respectively. The percentage of leeches in each size group was very consistent among years. Blood meals were found in 38–44% of the leeches in group I, 45–50% in group II, 70–75% in group III, and 100% in group IV, but mammalian blood was present only in larger mature leeches (>3.5 g). 5. Medicinal leeches were first detected in the tarn in 1980 and are still present in 2007, so the population has persisted for at least 27 years. Compared with minimum viable population sizes for other species, including many endangered species, values for this medicinal leech population are extremely low, but may be typical of some rare freshwater invertebrates in isolated habitats.  相似文献   

3.
Since AMBI was published originally in 2000, it has been used in an increasing number of investigations with monitoring purposes, or to analyse impacts on soft-bottom macrobenthic communities. Some guidelines for its correct use were published in 2005; however, a main issue remained without an answer — which are the minimal area and number of replicates necessary, to obtain a precise estimate for AMBI? In this study, new methodologies such as bootstrap techniques have been applied to this particular problem.Data were obtained from sampling carried out in 1995, within the framework of the Littoral Water Quality Monitoring and Control Network of the Basque Country (northern Spain). The sampling strategy consisted of 11 intertidal estuarine sampling stations (0.25m2, sampled for each of six replicates) and 17 subtidal estuarine and coastal sampling stations (0.125m2, sampled for each of six replicates).Two replicates have been established as being sufficient, both for intertidal and subtidal sampling stations, to classify 80% of the pseudosamples into the same disturbance level, in terms of AMBI, for 64% of the stations.For the minimal area, it has been determined also (for both intertidal and subtidal sampling stations) that 0.25m2 is sufficient to classify 80% of the iterations into the same disturbance level, for 64% of the stations.  相似文献   

4.
Environmental DNA (eDNA) is DNA that has been isolated from field samples, and it is increasingly used to infer the presence or absence of particular species in an ecosystem. However, the combination of sampling procedures and subsequent molecular amplification of eDNA can lead to spurious results. As such, it is imperative that eDNA studies include a statistical framework for interpreting eDNA presence/absence data. We reviewed published literature for studies that utilized eDNA where the species density was known and compared the probability of detecting the focal species to the sampling and analysis protocols. Although biomass of the target species and the volume per sample did not impact detectability, the number of field replicates and number of samples from each replicate were positively related to detection. Additionally, increased number of PCR replicates and increased primer specificity significantly increased detectability. Accordingly, we advocate for increased use of occupancy modelling as a method to incorporate effects of sampling effort and PCR sensitivity in eDNA study design. Based on simulation results and the hierarchical nature of occupancy models, we suggest that field replicates, as opposed to molecular replicates, result in better detection probabilities of target species.  相似文献   

5.
Based on experimental population profiles of strains of the fly Megaselia scalaris (Phoridae), the minimal number of sample profiles was determined that should be repeated by bootstrap simulation process in order to obtain a confident estimation of the mean population profile and present estimations of the standard error as a precise measure of the simulations made. The original data are from experimental populations founded with SR and R4 strains, with three replicates, which were kept for 33 weeks by serial transfer technique in a constant temperature room (25 +/- 1.0 degrees C). The variable used was population size and the model adopted for each profile was a stationary stochastic process. By these simulations, the three experimental population profiles were enlarged so as to determine minimum sample size. After sample size was determined, bootstrap simulations were made in order to calculate confidence intervals and to compare the mean population profiles of these two strains. The results show that with a minimum sample size of 50, stabilization of means begins.  相似文献   

6.
Morphometric studies were performed on 12 mammalian species (degu, dog, guinea pig, hamster, human, monkey, mouse, opossum, rabbit, rat, stallion, and woodchuck) to determine volume density percentage (Vv%), volume (V), and numerical density (Nv) of seminiferous tubule components, especially those related to the Sertoli cell, and to make species comparisons. For most species, measurements were taken both from stages where elongate spermatids were deeply embedded within the Sertoli cell and from stages near sperm release where elongate spermatids were in shallow crypts within the Sertoli cell. Montages, prepared from electron micrographs, were used to determine Vv% of Sertoli cell components in seminiferous tubules. Excluding the tubular lumen, the Sertoli cell occupied from a high of 43.1% (woodchuck) to a low of 14.0% (mouse) of the tubular epithelium. There was a strong negative correlation (r = -0.83; P less than 0.005) of volume occupancy of Sertoli cells with sperm production. Nuclear volume, as determined by serial reconstruction using serial thick sections, ranged from a high of 848.4 microns 3 (opossum) to a low of 273.8 microns 3 (degu). There was no correlation (r = 0.02) of nuclear volume with volume occupancy (Vv%) in the tubule. Sertoli cell volume was determined by point-counting morphometry at the electron-microscope level as the product of the nuclear size and points determined over the entire cell divided by points over the nucleus. Sertoli cell V ranged from 2,035.3 microns 3 (degu) to 7,011.6 microns 3 (opossum) and was highly correlated (r = 0.85; P less than 0.001) with nuclear size. However, there was no significant correlation between the Sertoli cell size (V) and volume occupancy (Vv%; r = 0.13) or sperm production (r = -0.21). Stereological estimates of the numerical density (Nv) of Sertoli cells ranged from a high of 101.9 x 10(6) (monkey) to a low of 24.9 x 10(6) (rabbit) cells per cm3 of testicular tissue. There was no correlation of numerical density of Sertoli cells with sperm production (r = 0.002). A negative correlation was, however, observed between the numerical density of the Sertoli cells and the Sertoli cell size (r = -0.79; P less than 0.002). Data from the present study are compared with those previously published. This is the first study to compare Sertoli cell morphological measurements using unbiased sampling techniques. Morphometric data are provided which will serve as a basis for other morphometric studies.  相似文献   

7.
Genotype-by-environment interaction is caused by variation in genetic environmental sensitivity (GES), which can be subdivided into macro- and micro-GES. Macro-GES is genetic sensitivity to macro-environments (definable environments often shared by groups of animals), while micro-GES is genetic sensitivity to micro-environments (individual environments). A combined reaction norm and double hierarchical generalised linear model (RN-DHGLM) allows for simultaneous estimation of base genetic, macro- and micro-GES effects. The accuracy of variance components estimated using a RN-DHGLM has been explicitly studied for balanced data and recommendation of a data size with a minimum of 100 sires with at least 100 offspring each have been made. In the current study, the data size (numbers of sires and progeny) and structure requirements of the RN-DHGLM were investigated for two types of unbalanced datasets. Both datasets had a variable number of offspring per sire, but one dataset also had a variable number of offspring within macro-environments. The accuracy and bias of the estimated macro- and micro-GES effects and the estimated breeding values (EBVs) obtained using the RN-DHGLM depended on the data size. Reasonably accurate and unbiased estimates were obtained with data containing 500 sires with 20 offspring or 100 sires with 50 offspring, regardless of the data structure. Variable progeny group sizes, alone or in combination with an unequal number of offspring within macro-environments, had little impact on the dispersion of the EBVs or the bias and accuracy of variance component estimation, but resulted in lower accuracies of the EBVs. Compared to genetic correlations of zero, a genetic correlation of 0.5 between base genetic, macro- and micro-GES components resulted in a slight decrease in the percentage of replicates that converged out of 100 replicates, but had no effect on the dispersion and accuracy of variance component estimation or the dispersion of the EBVs. The results show that it is possible to apply the RN-DHGLM to unbalanced datasets to obtain estimates of variance due to macro- and micro-GES. Furthermore, the levels of accuracy and bias of variance estimates when analysing macro- and micro-GES simultaneously are determined by average family size, with limited impact from variability in family size and/or cohort size. This creates opportunities for the use of field data from populations with unbalanced data structures when estimating macro- and micro-GES.  相似文献   

8.
David R. Schiel 《Oecologia》1982,54(3):379-388
Summary Feeding choice of the echinoid Evechinus chloroticus was examined for six fucoid and one laminarian species of algae. Three experiments were conducted to determine the algal choice by echinoids under controlled conditions. In the first experiment, the seven algal species were presented to echinoids in laboratory conditions. The second experiment had replicates of the algal species placed randomly on a subtidal rocky reef where echinoids were abundant and randomly dispersed. For the third experiment, which was also field-based, replicates of one highly-ranked species, Ecklonia radiata, were presented to naturally dispersed Evechinus. In addition, a series of controlled observations was used to examine the order in which echinoids removed algae from mixed species stands on subtidal boulders and to determine if this was related to the experimentally demonstrated choices of algal species.The results of the first two experiments showed that there were differences between algal species in the amount of material grazed by echinoids. Rankings of algal species from the field experiment were not correlated with rankings from the laboratory experiment. The order of removal of algal species from natural stands was correlated with the laboratory-based experimental rankings of algal species, but not with the rankings from the field-based experiment or with algal species availability. There were differences between algal species in their vulnerability to grazing by echinoids, as measured by regression analyses on the amount of material grazed from algal replicates vs. the number of attached echinoids. Within each species, echinoid numbers exerted a non-linear effect on the removal of algal material. In the third experiment, where only one species of algae was presented, the echinoids still distributed themselves non-randomly amongst replicates, aggregating on some samples.Data on the finer scale distribution of algal species over the entire subtidal reef on which these experiments and observations were conducted indicate that Evechinus are not often presented with a choice of adult plants of several different species in natural stands.The evidence from this study supports the conclusion that feeding preferences by echinoids are labile and do not clearly exert the major influence on the removal of plants from natural stands. Preference, as determined from experimental rankings of algal species, is only one of a number of factors which may affect the removal of algae by echinoids. Other important factors are the density of echinoids present, algal susceptibility to removal, and the distribution and abundances of the various algal species and echinoids relative to each other. It is suggested that algal life history characteristics may be unaffected by echinoids and that coevolutionary arguments are not appropriate for describing echinoid-algal interactions.  相似文献   

9.
SUMMARY. After considering the large number of dredges described in the literature, four light-weight dredges were chosen for manual operation from a small boat or the bank: Irish triangular dredge, small Fast dredge, medium-sized and large Naturalist's dredges. The dredges were tested in a series of trials at three sites in two rivers. A stratified random sample (number of sampling units, n = 5) was taken at each site and the modal particle sizes at sites 1–3 were 1–2 mm (fine gravel), 64–128 mm (larger stones) and 128–256 mm, respectively. The dredges usually took a similar range of stone sizes at each site but the design of the Fast dredge excluded larger stones (>16 mm). The Irish dredge sometimes failed to operate correctly. Variations in the volume of substrata taken with each dredge were large, both between sampling units in the same sample and between samples. The latter differences were partially due to the increase in the modal size of the stones, especially between sites 1 and 2, the different sampling areas of the dredges and the depth of penetration into the substratum. Penetration depth was probably greatest for the two Naturalist's dredges, smaller for the Fast dredge and smallest for the Irish dredge. In field trials, the relative abundances of major taxa were similar for most dredges at each site; major exceptions were the Fast dredge at site 2 and the Irish dredge at site 3. There was a high variability between sampling units in the same sample and therefore a lack of precision in the estimates of the mean number of invertebrates per sample. Therefore, the dredges cannot be used as quantitative samplers for the estimation of population density. Their adequacy as qualitative samplers for the estimation of total number of taxa per sample varied considerably and maximum estimates of their efficiencies for a small sample (n= 5) were <40% for the Irish and Fast dredges, >57% for the medium-sized Naturalist's dredge and >76% for the large Naturalist's dredge. There was a clear relationship between the number of taxa and the number of invertebrates taken at each site and this relationship was well described by a power law with an exponent within the range 0.18–0.53. The number of sampling units in the sample had no significant effect on the power-law equations for each site. The power-law equation was very similar for most of the dredges at each site, the only major exception being the Fast dredge at site 1. The implications of this relationship are discussed.  相似文献   

10.
The objective was to evaluate the relationship of a competitive index (CI) determined by heterospermic performance and post-thaw semen quality of the same stored ejaculates. Semen from multiple ejaculates collected in succession from each bull (four Holstein and four Jersey) was pooled. Heterospermic doses (20x10(6)/straw) were made to obtain all possible Holstein-Jersey combinations (16 two-bull combinations) and contained 20x10(6) sperm/mL/bull. Cows at two University dairy farms were inseminated on observed or synchronized estrus. The sire of calves (N=460) were determined and a CI was determined for each bull (based on the number of calves sired). Prior to preparation of the heterospermic doses, a sub-sample of semen from each bull was taken, processed, frozen, and stored concurrently with heterospermic samples. Post-thaw semen samples (homospermic) from each bull were assessed for: sperm morphology, acrosome integrity, sperm motility parameters assessed by computer assisted sperm analysis (CASA), flow cytometry analysis of DNA Fragmentation Index (DFI), and Plasma Membrane Integrity (PMI). Heterospermic performance of Holstein bulls was superior to that of Jersey bulls. The DFI was negatively correlated to CI (r=-0.87; P<0.001), whereas the PMI (r=0.87; P<0.001) and total progressive motility (r=0.74; P<0.05) assessed by CASA were positively correlated to CI. In multivariate regression models, the DFI and PMI accounted for 87% variance in competitive index. In conclusion, bulls with less DFI and higher PMI had higher probabilities of siring calves.  相似文献   

11.
Question: What are the effects of the number of presences on models generated with multivariate adaptive regression splines (MARS)? Do these effects vary with data quality and quantity and species ecology? Location: Spain and Ecuador. Methods: We used two data sets: (1) two trees from Spain, representing high‐occurrence number data sets with real absences and unbalanced prevalence; (2) two herbs from Ecuador, representing low‐occurrence number data sets without real absences and balanced prevalence. For model quality, we used two different measures: reliability and stability. For each sample size, different replicates were generated at random and then used to generate a consensus model. Results: Model reliability and stability decrease with sample size. Optimal minimum sample size varies depending on many factors, many of which are unknown. Regional niche variation and ecological heterogeneity are critical. Conclusions: (1) Model predictive power improves greatly with more than 18‐20 presences. (2) Model reliability depends on data quantity and quality as well as species ecological characteristics. (3) Depending on the number of presences in the data set, investigators must carefully distinguish between models that should be treated with skepticism and those whose predictions can be applied with reasonable confidence. (4) For species combining few initial presences and wide environmental range variation, it is advisable to generate several replicate models that partition the initial data and generate a consensus model. (5) Models of species with a narrow environmental range variation can be highly stable and reliable, even when generated with few presences.  相似文献   

12.
In this study I assess the statistical power to detect a significantly greater increase in bird population size on treatment farms than on control farms given that there is a substantial treatment effect. Computer simulations of bird populations on New?Zealand sheep/beef farms were used to generate significant changes in bird abundance from (a) controlling predation by introduced small mammals, (b) habitat structural complexity, and (c) an interaction of both. A simplified computer model of bird population dynamics was developed that predicted a birth pulse of 357% when predators were controlled and 110% if not, and a target of detecting the experimental elevation of bird abundance at a statistically significant level (P 相似文献   

13.
Successful multiparasitism by five parasitoid wasps of the scale insectNipponaclerda biwakoensis was investigated at a reed bed in Lake Biwa. The wasps were gregarious endoparasitoids consuming the entire body of the host. The rate of successful multiparasitism for a parasitoid species was defined as the proportion of the number of individual hosts from which the species emergedwith other species to the total number of hosts from which the species emerged. The rates were high for each parasitoid species, ranging from 17 to 82%. Successful multiparasitism frequently involved two species with similar adult size, but rarely involved species with different adult size. For four of the five species, the number of wasps per host was significantly less when wasps emerged from a host with other species relative to when emerged alone. For the other one species, the number of wasps was less, but the difference was not significant. With only one species, female wasps were significantly smaller when they emerged from a host with other species relative to when emerged alone.  相似文献   

14.
We discuss here the influence of sample size (number of replicates) on the accuracy and precision of the results when sampling profundal benthos with an Ekman grab according to the Finnish standard, SFS 5076, which is equivalent to the Swedish and Norwegian standards. The aim was to find criteria for choosing a sample size which would avoid any powerful influence of chance on the results without entailing an unreasonable amount of work for monitoring purposes.Lake Haukivesi (area 620 km2, total phosphorus 13 µg l–1 and colour 35 Pt mg l–1), Lake Paasivesi (116 km2, 5 µg l–1 and 35 Pt mg l–1) and Lake Puruvesi (322 km2, 4 µg l–1 and 5 Pt mg l–1) were sampled randomly in June and October 1991. 25 Replicate samples were taken on each occasion from the deep profundal area of each lake, defined here as 60-100% of the maximum depth. The sedimentation areas studied were fairly homogeneous, since the animal communities were not markedly affected by the variations in depth. Distribution estimates for the statistics studied, such as number of individuals, expected number of species, diversity and benthic quality indices, were calculated for a large set of random samples taken from the empirical data by computer (bootstrap sampling). The sample variance, s 2, correlated with the mean animal density, m (ind. m–2), according to the equation s 2 = 31.77 m 1.247. The sample size required to achieve the desired precision in mean animal density (D, expressed as the ratio standard error/mean) can thus be estimated as n = 31.77 m –0.753 D –2. The number of replicate samples needed to achieve a standard error of 20% of the mean density was 10 in Lake Haukivesi, seven in Lake Paasivesi and 11 in Lake Puruvesi. The accuracy and precision of the estimated number of species, Shannon's diversity and Benthic Quality Index improved markedly as the sample size was increased to 10 replicates. As a compromise between work load and statistical reliability, a figure of 10 replicate Ekman samples is proposed here for the monitoring of profundal benthos. The proposed sample size usually produces individual numbers which are high enough for practical purposes, probably at least 100 individuals, which is recommended as a minimum in the standard. The lower number of replicate samples recommended in recent Finnish handbook, 3–5, usually produces inadequate data, and this may detract from the comparability of the results and leave the changes in profundal communities undetected.  相似文献   

15.
Summary Factors affecting the immobilisation and subsequent growth of plant cells in reticulated polyurethane foam particles have been studied using three plant species. Polyurethane foam from a number of commercial sources has been screened and a foam having a low phytotoxicity and good retention of plant cells selected for use. Particles (8×8×8 mm) of the material were seeded with plant cells from suspension culture and cells grown immobilised in particles until they occupied >80% of the available volume. For all species, foams containing small pores (60–80 ppi) were most effective in immobilising and retaining cells. For efficient use of the inoculum, high partial volumes of foam particles are required; with partial volumes above 40%, over 80% of the inoculum is taken up by the particles. While the initial immobilisation process presumably involves weak interactions between cells and the support material, factors such as inoculum size and the length of the loading period have been found to affect the immobilisation of cells and their subsequent growth within the matrix. A preliminary study of the requirements for the maintenance of viability of immobilised cultures at high cell densities has been made.  相似文献   

16.
We investigated biomass allocation and root architecture of eight tropical species with different successional status, as classified from the literature, along a size gradient up to 5 m. We focused on belowground development, which has received less attention than aboveground traits. A discriminant analysis based upon a combination of allocational and architectural traits clearly distinguished functional types and classified species according to successional status at a 100% success rate. For a given plant diameter, the pioneer species presented similar root biomass compared to the non-pioneer ones but higher cumulative root length and a higher number of root apices. A detailed study on the root system of a sub-sample of three species showed that the most late-successional species (Tabebuia rosea) had longer root internodes and a higher proportion of root biomass allocated to the taproot compared to the other two species (Hura crepitans and Luehea seemannii). Most pioneer species showed a higher leaf area ratio due to a higher specific leaf area (SLA). We conclude that the functional differences between pioneer and non-pioneer tree species found in natural forests were maintained in open-grown plantation conditions.  相似文献   

17.
18.
Estimation of species richness of local communities has become an important topic in community ecology and monitoring. Investigators can seldom enumerate all the species present in the area of interest during sampling sessions. If the location of interest is sampled repeatedly within a short time period, the number of new species recorded is typically largest in the initial sample and decreases as sampling proceeds, but new species may be detected if sampling sessions are added. The question is how to estimate the total number of species. The data collected by sampling the area of interest repeatedly can be used to build species accumulation curves: the cumulative number of species recorded as a function of the number of sampling sessions (which we refer to as “species accumulation data”). A classic approach used to compute total species richness is to fit curves to the data on species accumulation with sampling effort. This approach does not rest on direct estimation of the probability of detecting species during sampling sessions and has no underlying basis regarding the sampling process that gave rise to the data. Here we recommend a probabilistic, nonparametric estimator for species richness for use with species accumulation data. We use estimators of population size that were developed for capture‐recapture data, but that can be used to estimate the size of species assemblages using species accumulation data. Models of detection probability account for the underlying sampling process. They permit variation in detection probability among species. We illustrate this approach using data from the North American Breeding Bird Survey (BBS). We describe other situations where species accumulation data are collected under different designs (e.g., over longer periods of time, or over spatial replicates) and that lend themselves to of use capture‐recapture models for estimating the size of the community of interest. We discuss the assumptions and interpretations corresponding to each situation.  相似文献   

19.
Factors responsible for interspecific variability in host-specificity were investigated within 15 genera (including 176 species) of metazoan parasites found in Canadian freshwater fish. For each species in a genus, the parasite's number of known hosts was determined from published host-parasite records. The effects of the total number and mean size of potential hosts (i.e. all fish species belonging to the family or families that include a parasite's known hosts) on number of hosts of congeneric species were evaluated using multiple regressions. Since parasite species that have been recorded often tend to have greater numbers of known hosts than do seldom-recorded parasites, it was necessary to control for the confounding effect of study intensity. In all parasite genera, whether from highly specific taxa such as monogeneans or from less host-specific ones, there was a positive relationship between the number of potential hosts and the number of known hosts. However, no consistent relationships were observed between the mean size of potential hosts and number of known hosts. These results suggest that the availability of suitable host species may have been a key factor limiting the colonization of new hosts by fish parasites.  相似文献   

20.
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