The marine paleogene of the tremp region (NE Spain)-depositional sequences,facies history,biostratigraphy and controlling factors

Summary The marine Paleogene of the Tremp Basin in the Central Southern Pyrenees corresponds to four depositional sequences which are related to global eustatic third order cycles (Tejas A 2.3–2.6). Associated transgressive and downlap surfaces coincide with boundaries of biozones. Lowstand systems tracts consist of estuarine and braid delta systems. Transgressive and highstand systems tracts are composed of carbonate banks and reefs. Slow thrust-induced changes of the basin topography conditioned the basic type and the areal distribution of carbonate highstand and clastic lowstand systems. Rapid relative sea level changes controlled the activity and internal dynamic of the depositional systems. E-W directed blind thrust anticlines are covered during highstand periods by carbonate fringing banks withNummulites bars. N-S orientation of thrust anticlines leads to the evolution of reef-dominated barrier banks and shelf lagoonal homoclinal ramps. On-bank transport of carbonate sands dominates during transgressions, off-bank transport during highstand periods. Continuous thrusting during the Ilerdian caused angular unconformities only in combination with relative sea level fall. Sequence-internal onlap configurations result from contemporaneous tectonic tilting. Fourth order carbonate bank margin cycles contain well developed lowstand tracts due to increased subsidence rates. Fourth order flooding surfaces are marked by paleosoil horizons at their landward continuation.     

Response of the meiofaunal annelid Saccocirrus pussicus (Saccocirridae) to sandy beach morphodynamics

Australia is increasingly recognised as a global hotspot for sponge biodiversity, but there is a knowledge gap about sponge communities in northern Australia, including those in Commonwealth Marine Reserves. We aim to quantify sponge biodiversity of the eastern Joseph Bonaparte Gulf and adjacent Van Diemen Rise (VDR) and to examine spatial and environmental patterns in community structure. Sponges were collected with a benthic sled from 65 sites encompassing five geomorphic features (bank, terrace, ridge, plain, and valley), study area (as a proxy for distance offshore) and three environmental variables (depth, substrate hardness, and slope). A total of 283 species were collected, representing four classes, 53 families and at least 117 genera. Sponge richness and biomass were related to those of other taxa. Sponge diversity was generally highest further offshore and on raised geomorphic features, particularly banks. Sponge assemblages on the same bank were more similar than those from different banks, although full interpretation of patterns is limited by the relatively low sampling effort. The current study will help facilitate integrated marine management by providing a baseline species inventory, supporting the VDR’s carbonate banks as a key ecological feature, and highlighting the importance of sponges as habitat providers and potential biological surrogates for monitoring.     

Use of SeaWiFS ocean color data to estimate neritic sediment mass transport from carbonate platforms for two hurricane-forced events

Plumes of neritic sediment caused by the passage of Hurricane Gert near Bermuda in 1999, and by the passage of Hurricane Michelle over Cubas Gulf of Batabano in 2001, were observed by the Sea-viewing Wide Field-of-view Sensor (SeaWiFS). The mass of sediments in each of these plumes, which consist largely of neritic carbonate particles, was estimated using an algorithm for the calculation of suspended sediment concentrations. The Bermuda and Batabano plumes transported 0.22 and 1.2–1.35 million kg of sediment, respectively. The algorithm results were compared with the results from two other sediment mass algorithms and proved to be consistent. These results indicate the potential use of remote sensing to estimate carbonate flux from coral reefs and banks and atolls as an augmentation to in situ studies. In addition, the use of remote sensing data may improve estimates of the annual global carbonate sediment flux, a quantity important to models of global carbonate production and the global carbon cycle.James G. Acker and Denis Nadeau are employed by Science Systems and Applications, Inc.     

Global distribution of outbreaks of water-associated infectious diseases

Background

Water plays an important role in the transmission of many infectious diseases, which pose a great burden on global public health. However, the global distribution of these water-associated infectious diseases and underlying factors remain largely unexplored.

Methods and Findings

Based on the Global Infectious Disease and Epidemiology Network (GIDEON), a global database including water-associated pathogens and diseases was developed. In this study, reported outbreak events associated with corresponding water-associated infectious diseases from 1991 to 2008 were extracted from the database. The location of each reported outbreak event was identified and geocoded into a GIS database. Also collected in the GIS database included geo-referenced socio-environmental information including population density (2000), annual accumulated temperature, surface water area, and average annual precipitation. Poisson models with Bayesian inference were developed to explore the association between these socio-environmental factors and distribution of the reported outbreak events. Based on model predictions a global relative risk map was generated. A total of 1,428 reported outbreak events were retrieved from the database. The analysis suggested that outbreaks of water-associated diseases are significantly correlated with socio-environmental factors. Population density is a significant risk factor for all categories of reported outbreaks of water-associated diseases; water-related diseases (e.g., vector-borne diseases) are associated with accumulated temperature; water-washed diseases (e.g., conjunctivitis) are inversely related to surface water area; both water-borne and water-related diseases are inversely related to average annual rainfall. Based on the model predictions, “hotspots” of risks for all categories of water-associated diseases were explored.

Conclusions

At the global scale, water-associated infectious diseases are significantly correlated with socio-environmental factors, impacting all regions which are affected disproportionately by different categories of water-associated infectious diseases.     

A geospatial assessment of the relationship between reef flat community calcium carbonate production and wave energy

The ability of benthic communities inhabiting coral reefs to produce calcium carbonate underpins the development of reef platforms and associated sedimentary landforms, as well as the fixation of inorganic carbon and buffering of diurnal pH fluctuations in ocean surface waters. Quantification of the relationship between reef flat community calcium carbonate production and wave energy provides an empirical basis for understanding and managing this functionally important process. This study employs geospatial techniques across the reef platform at Lizard Island, Great Barrier Reef, to (1) map the distribution and estimate the total magnitude of reef community carbonate production and (2) empirically ascertain the influence of wave energy on community carbonate production. A World-View-2 satellite image and a field data set of 364 ground referencing points are employed, along with data on physical reef characteristics (e.g. bathymetry, rugosity) to map and validate the spatial distribution of the four major community carbonate producers (live coral, carbonate sand, green calcareous macroalgae and encrusting calcified algae) across the reef platform. Carbonate production is estimated for the complete reef platform from the composition of these community components. A synoptic model of wave energy is developed using the Simulating WAves Nearshore (SWAN) two-dimensional model for the entire reef platform. The relationship between locally derived measures of carbonate production and wave energy is evaluated at both the global scale and local scale along spatial gradients of wave energy traversing the reef platform. A wave energy threshold is identified, below which carbonate production levels appear to increase with wave energy and above which mechanical forcing reduces community production. This implies an optimal set of hydrodynamic conditions characterized by wave energy levels of approximately 300 J m^?2, providing an empirical basis for management of potential changes in community carbonate production associated with climate change-driven increases in wave energy.     

Saving Europe’s threatened flora: progress towards GSPC Target 8 in Europe

The European flora is of global significance but many species are facing an ever increasing range of threats, especially the growing impacts of climate change. While various estimates have been made for the number of threatened plant species in Europe, an up-to-date European plant Red List does not presently exist. Target 8 of the Global Strategy for Plant Conservation (GSPC) calls for 60% of threatened plant species to be conserved in ex situ collections by 2010. In the absence of a European plant Red List, it is difficult to monitor progress at the regional level towards this target. To address this gap Botanic Gardens Conservation International (BGCI) has developed a consolidated list of European threatened species as a step towards a formal Red List. The database consists of national Red List data from 28 European countries and includes records for over 11,000 taxa. National Red List data were supplemented by information on the critically endangered plants of Europe provided by the Museum National d’Histoire Naturelle/European Topic Centre on Biological Diversity and the Conservatoire Botanique National de Brest. A list of regionally threatened species was extracted from the database and screened against BGCI’s database of plants in cultivation in botanic gardens (PlantSearch) and ENSCONET’s (European Native Seed Conservation Network) database of plants conserved in European seed banks. This analysis revealed that 42% of European threatened species are currently included in ex situ conservation programmes in Europe.     

Calcification patterns of Rivularia-type cyanobacteria: examples from the Miocene of the North Alpine Foreland Basin

Facies - The Devonian to Carboniferous (DC) transition coincided with a green-to-ice house climatic shift, anoxia, disappearance of lower latitude carbonate banks, and turnover from warm-to-cool...     

Patterns of Phanerozoic carbonate platform sedimentation

Carbonate platforms changed substantially in spatial extent, geometry, composition and palaeogeographical distribution through the Phanerozoic. Although reef construction and carbonate platform development are intimately linked today, this was not the case for most of the Phanerozoic. Carbonate production by non-enzymatic precipitation and non-reefal organisms is mostly responsible for this decoupling. Non-reefal carbonate production was especially prolific during times of depressed reef growth, balancing losses in reef carbonate production. Palaeogeographical distribution and spatial extent of Phanerozoic carbonate platforms exhibit trends related to continental drift, evolutionary patterns within carbonate platform biotas, climatic change and, possibly, variations in ocean chemistry. Continental drift moved large Palaeozoic tropical shelf areas into higher latitudes, thereby reducing the potential size of tropical platforms. However, the combined global size of carbonate platforms shows no significant decline through the Phanerozoic, suggesting that availability of tropical shelf areas was not a major control of platform area. This is explained by the limited platform coverage of low-latitude shelves (42% maximum) and occasional high-latitude excursions of platform carbonates. We speculate that reduced tropical shelf area in the icehouse tropics forced the migration of the many carbonate-secreting organisms into higher latitudes and, where terrigenous input was sufficiently low, extensive carbonate platform could develop.     

广西南丹拉要泥盆纪礁组合剖面的古生态特征

广西南丹拉要泥盆纪生物礁发育在台地的边缘,是一个礁、滩、开阔台地沉积互相交替的叠置礁。礁组合中出现5个主要的生物群落。其中以层孔虫、床板珊瑚为主的 Stromatopora-Alveolites群落是最重要的造礁群落。这些群落有规律地分布在礁组合的不同部位。它们在剖面上的垂直分布显示礁组合的发育过程分成3个大的旋回,其中包括9个次一级的成礁旋回。旋回反映了海水深浅的变化。     

The influence of tidal channels on the distribution of salt marsh plant species in Petaluma Marsh,CA, USA

Tidal channels influence the distribution and composition of salt marsh vegetation in a San Francisco Bay salt marsh. Two channel networks in the Petaluma Marsh, Sonoma County, CA, were mapped and characterized using global positioning and geographic information systems. Plant species abundance was sampled on transects placed perpendicular to and extending away from the channel banks. The vegetation showed significant increases in species richness along channel banks and larger areas of effect which increased approximately linearly with channel size. Composition of species assemblages varies with distance from the channel bank and channel size. These results demonstrate that salt marsh plant assemblages, composed of both major and minor species, are distributed with respect to the channel network in Petaluma Marsh.     

海南杜鹃在河岸带弯道两侧的空间分布格局和年龄结构差异

河岸带是河流与陆地生态系统的交错带, 孕育了丰富的生物多样性。河流的冲刷与地势的作用使得河岸带往往形成弯道, 弯道内外两侧水流速度、泥沙性质与植物繁殖体聚集程度不同, 影响到植物生长与种群动态, 可能导致河岸带弯道凸岸、凹岸两侧植物空间分布格局和种群结构存在较大差异。该研究以中国特有、狭域分布的海南杜鹃(Rhododendron hainanense)为例, 揭示溪流弯道对其两侧海南杜鹃种群空间分布格局与种群动态的影响。在海南岛3个国家级自然保护区内各设置2个河岸弯道样带, 用方差/平均值法对弯道凸岸、凹岸两侧海南杜鹃的空间分布格局和种群动态进行对比研究。结果显示: (1)海南杜鹃弯道凸岸的种群结构呈增长型, 凹岸基本呈衰退型; (2)凸岸一侧上下游的海南杜鹃种群基本呈增长型, 凹岸一侧上下游的海南杜鹃则出现断龄现象; (3)距离弯顶位置或河岸越远, 各龄级海南杜鹃种群个体数量基本呈下降趋势; (4)在2 m × 2 m尺度下, 弯道凸岸及其下游的海南杜鹃主要呈聚集分布, 上游近似随机分布, 凹岸及其上下游则均呈随机分布。海南杜鹃分布的山区河岸带水流较快、坡度较大, 可能是导致弯道凹岸个体较少、种群结构呈衰退型的主要原因。因此, 河岸弯道内外两侧可能存在个体生长与群体差异, 在开展河岸带植物种群动态与物种保育研究中需给予重视。     

Development and validation of a molecular technique for the analysis of archived formalin-preserved phytoplankton samples permits retrospective assessment of Emiliania huxleyi communities

The coccolithophores, particularly the species Emiliania huxleyi (Lohmann) Hay & Mohler, account for the bulk of global calcium carbonate production and as such play a fundamental role in global CO2 cycling and the carbonate chemistry of the oceans. To evaluate the response of this functional group to the effects of climate change, we undertook a feasibility study to determine whether a retrospective approach could be used on archived coccolithophore datasets. We demonstrate for the first time a technique for the extraction of E. huxleyi nucleic acids from archived formalin-fixed samples of the long-term Continuous Plankton Recorder. Molecular analysis of a nine year old formalin-fixed sample reveals the presence of a diverse population of E. huxleyi genotypes within a developing coccolithophore bloom. In addition, E. huxleyi sequences were amplified from a number of formalin-fixed samples, the earliest of which was collected in August 1972. This molecular assay promises the possibility of studying global variations in the distribution and genetic make-up of E. huxleyi communities over extensive periods of time.     

Facies dynamics in Eocene to Oligocene circumalpine carbonates

A new concept, termed ‘Facies Dynamics’ (defined as changes of specific carbonate facies types in time and space, which are controlled by phylogenetic, ecological and geological parameters), is introduced. This concept aims to define and interpret spatial and temporal changes of carbonate facies patterns. It is based on Middle Eocene to Early Oligocene shallow-water carbonate facies types from the circumalpine area (north-eastern Italy, northern Slovenia, Austria and southern Bavaria), which are compared with respect to dominating biogenic components and their distributions along a shelf gradient. This comparison has lead to the distinction and definition of 14 Major Facies Types (MFTs), which are dominated by coralline algae, larger and smaller foraminifera, corals and bryozoans. The presence and distribution of these MFTs from three different time slices (Middle Eocene, Late Eocene and Early Oligocene) is compared. Nine aspects of facies dynamics are distinguished: origination, extinction, immigration, emigration, expansion, reduction, stasis, shift, and replacement of MFTs. These changes are controlled by regional changes in ecological parameters, but also by global events, especially extinction patterns at the Middle/Late Eocene boundary and at the Eocene/Oligocene boundary.     

Restoration of wetland vegetation using soil seed banks: lessons from a project in Lake Kasumigaura, Japan

The restoration of degraded wetland ecosystems and the recovery of wetland biodiversity are important global issues. Generally, wetland restoration projects include activities to recover vegetation. A promising revegetation technique is one in which soil seed banks are utilized as the source of plant recolonization. Using such a technique, a pilot project to restore lakeshore vegetation was launched at Lake Kasumigaura, Japan, in 2002. In the project, lake sediments containing the seed banks were spread thinly (∼10 cm) on the surfaces of artificial lakeshores, which were constructed in front of concrete levees and had microtopographic variations. In total, 180 species, including six endangered or vulnerable species and 12 native submerged plants that had disappeared from the above-ground vegetation of the lake, were recorded in five recreated lakeshores (total area, 65,200 m²) during the first year of the restoration. The distribution of each restored species at the sites suggested the importance of microtopographic relief for recolonizing species-rich lakeshore vegetation. Furthermore, the origin of the source seed banks affected the species composition of the restored vegetation. On the other hand, the restoration sites were subject to exotic plant invasions. Here, we report lessons learned from the Lake Kasumigaura restoration project as a contribution to the establishment of ecologically sound revegetation techniques.     

Difference in spatial distribution patterns and population structures of Rhododendron hainanense between both sides of riparian bends

河岸带是河流与陆地生态系统的交错带, 孕育了丰富的生物多样性。河流的冲刷与地势的作用使得河岸带往往形成弯道, 弯道内外两侧水流速度、泥沙性质与植物繁殖体聚集程度不同, 影响到植物生长与种群动态, 可能导致河岸带弯道凸岸、凹岸两侧植物空间分布格局和种群结构存在较大差异。该研究以中国特有、狭域分布的海南杜鹃(Rhododendron hainanense)为例, 揭示溪流弯道对其两侧海南杜鹃种群空间分布格局与种群动态的影响。在海南岛3个国家级自然保护区内各设置2个河岸弯道样带, 用方差/平均值法对弯道凸岸、凹岸两侧海南杜鹃的空间分布格局和种群动态进行对比研究。结果显示: (1)海南杜鹃弯道凸岸的种群结构呈增长型, 凹岸基本呈衰退型; (2)凸岸一侧上下游的海南杜鹃种群基本呈增长型, 凹岸一侧上下游的海南杜鹃则出现断龄现象; (3)距离弯顶位置或河岸越远, 各龄级海南杜鹃种群个体数量基本呈下降趋势; (4)在2 m × 2 m尺度下, 弯道凸岸及其下游的海南杜鹃主要呈聚集分布, 上游近似随机分布, 凹岸及其上下游则均呈随机分布。海南杜鹃分布的山区河岸带水流较快、坡度较大, 可能是导致弯道凹岸个体较少、种群结构呈衰退型的主要原因。因此, 河岸弯道内外两侧可能存在个体生长与群体差异, 在开展河岸带植物种群动态与物种保育研究中需给予重视。     

西南不同岩性混合小流域化学风化特征

岩石化学风化影响着全球碳循环和气候变化,化学风化速率的估算及控制因素一直是研究的热点。为探究不同岩性混合小流域内化学风化速率及影响因素,于2018年9月对印江河流域、石阡河流域及余庆河流域采集河水样品并分析水化学特征。结果表明:河水的总溶解性固体(TDS)平均值为244 mg·L^-1,高于世界河流平均值(100 mg·L^-1);TDS值的空间差异显示,岩性分布不同导致离子浓度的明显变化。流域中的优势阴阳离子分别为HCO3^-和Ca^2+,表明流域碳酸盐岩风化对河水水化学组成起主导作用;通过正演模型解析不同端元(大气、人为、硅酸盐岩和碳酸盐岩)对河流中总溶解阳离子贡献发现,支流中碳酸盐岩贡献变化明显(55.0%~93.9%),空间差异主要受岩性影响;印江河、石阡河和余庆河的硅酸盐岩风化速率分别为4.4、2.8和2.5 t·km^-2·a^-1,相应的CO2消耗速率为45×10^3、18×10^3和16×10^3mol·km^-2·a^-1;碳酸盐岩风化速率显著高于硅酸盐岩风化速率,3条河流的碳酸盐岩风化速率分别为43.7、24.7和29.8 t·km^-2·a^-1;CO2消耗速率为498×10^3、284×10^3和354×10^3mol·km^-2·a^-1。研究表明,同一区域相同气候条件下流域风化的空间差异显示了岩性对河流风化的控制作用,其结果可用于区域水环境质量和碳循环评估。     

Exhaustive reanalysis of barcode sequences from public repositories highlights ongoing misidentifications and impacts taxa diversity and distribution

Accurate species identification often relies on public repositories to compare the barcode sequences of the investigated individual(s) with taxonomically assigned sequences. However, the accuracy of identifications in public repositories is often questionable, and the names originally given are rarely updated. For instance, species of the Sea Lettuce (Ulva spp.; Ulvophyceae, Ulvales, Ulvaceae) are frequently misidentified in public repositories, including herbaria and gene banks, making species identification based on traditional barcoding unreliable. We DNA barcoded 295 individual distromatic foliose strains of Ulva from the North-East Atlantic for three loci (rbcL, tufA, ITS1). Seven distinct species were found, and we compared our results with all worldwide Ulva spp. sequences present in the NCBI database for the three barcodes rbcL, tufA and the ITS1. Our results demonstrate a large degree of species misidentification, where we estimate that 24%–32% of the entries pertaining to foliose species are misannotated and provide an exhaustive list of NCBI sequences reannotations. An analysis of the global distribution of registered samples from foliose species also indicates possible geographical isolation for some species, and the absence of U. lactuca from Northern Europe. We extended our analytical framework to three other genera, Fucus, Porphyra and Pyropia and also identified erroneously labelled accessions and possibly new synonymies, albeit less than for Ulva spp. Altogether, exhaustive taxonomic clarification by aggregation of a library of barcode sequences highlights misannotations and delivers an improved representation of species diversity and distribution.     

Carbonate production of an emergent reef platform, Warraber Island, Torres Strait, Australia

Complex relationships exist between tropical reef ecology, carbonate (CaCO₃) production and carbonate sinks. This paper investigated census-based techniques for determining the distribution and carbonate production of reef organisms on an emergent platform in central Torres Strait, Australia, and compared the contemporary budget with geological findings to infer shifts in reef productivity over the late Holocene. Results indicate that contemporary carbonate production varies by several orders of magnitude between and within the different reef-flat sub-environments depending on cover type and extent. Average estimated reef-flat production was 1.66 ± 1.78 kg m⁻² year⁻¹ (mean ± SD) although only 23% of the area was covered by carbonate producers. Collectively, these organisms produce 17,399 ± 18,618 t CaCO₃ year⁻¹, with production dominated by coral (73%) and subordinate contributions by encrusting coralline algae (18%) articulated coralline algae, molluscs, foraminifera and Halimeda (<4%). Comparisons between the production of these organisms across the different reef-flat zones, surface sediment composition and accumulation rates calculated from cores indicate that it is necessary to understand the spatial distribution, density and production of each major organism when considering the types and amounts of carbonate available for storage in the various reef carbonate sinks. These findings raise questions as to the reliability of using modal production rates in global models independent of ecosystem investigation, in particular, indicating that current models may overestimate reef productivity in emergent settings. Electronic supplementary material Supplementary material is available in the online version of this article at and is accessible for authorized users.     

Wetland drying indirectly influences plant community and seed bank diversity through soil pH

High altitude wetlands on the Tibetan Plateau have been shrinking due to anthropogenic disturbances and global climate change. However, the few studies that have been conducted on wetlands are inconclusive about the effect of soil moisture on seed banks and potential of seed banks in wetlands with different levels of soil moisture for regeneration of dried wetlands. We investigated seed banks and plant communities along a soil moisture gradient. A structural equation model was used to analyze the direct and indirect effects of soil moisture on seed banks, as well as the relationship between plant communities and seed banks. Although soil moisture had no direct effects on seed bank richness and density and indirect effects on seed banks through plant community, it had indirect effects on the seed bank through soil pH. Soil moisture also did not have direct effects on plant community richness, but it had indirect effects through soil pH. Plant community composition changed with soil moisture, but aboveground plant abundance and seed banks composition did not change. Low similarity exists between plant community and seed banks for all wetlands, and similarity decreased along the moisture gradient. The key factor determining plant community diversity was soil pH, while seed bank diversity was mainly affected by soil pH and plant community diversity with wetland drying. Although potential for regenerating the plant community from the seed bank decreased with an increase in soil moisture, drained wetlands still have enough residual seeds for successful restoration of species-rich alpine meadows.