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1.
遗传算法是模拟生物进化过程的计算模型,是一种全局优化搜索算法。将遗传算法与转录因子结合位点识别问题相结合的新方法,以一致性序列模型作为保守motif的描述模型,通过对motif序列与待测序列的比对问题进行编码,将其转化成搜索空间中的优化问题,利用遗传算法来搜索最优解,预测转录因子的结合位点。实验结果表明,这种新的方法是有效的,它在占用少量内存的情况下能够准确地识别出待测转录因子结合位点。  相似文献   

2.
基于人工神经网络-遗传算法的樟芝发酵培养基优化   总被引:1,自引:0,他引:1  
采用优化模型对药用丝状真菌樟芝的复杂发酵过程进行建模,并获得最优发酵培养基组成.对樟芝发酵过程中的形态变化过程进行了观察,并分别采用人工神经网络(ANN)和响应面法(RSM)对樟芝发酵过程进行建模,同时采用遗传算法(GA)优化了发酵培养基组成.结果表明,ANN模型比RSM模型具有更好的实验数据拟合能力和预测能力,GA计算得到樟芝生物量理论最大值为6.2 g/L,并获得发酵最佳接种量及培养基组成:孢子浓度1.76× 105个/mL,葡萄糖29.1 g/L,蛋白胨9.4 g/L,黄豆粉2.8 g/L.在最佳培养条件下,樟芝生物量为(6.1±0.2)g/L.基于ANN-GA的优化方法可用于优化其他丝状真菌的复杂发酵过程,从而获得生物量或活性代谢产物.  相似文献   

3.
【背景】萎缩芽孢杆菌E20303可以有效地抑制马铃薯干腐病病原菌的活性,而响应面法可在较少的试验次数下优化生防菌发酵培养基配方与发酵条件,获得的最优组合将为马铃薯干腐病生防菌剂的制备与应用提供参考。【目的】以分离自青海察尔汗盐湖湖泥中且对马铃薯干腐病病原菌具有较高抑菌活性的萎缩芽孢杆菌E20303为研究对象,利用响应面法对其培养基配方和发酵条件进行优化,以期提高其对马铃薯干腐病病原菌的抑菌活性。【方法】采用单因素试验、中心组合设计试验及响应面法设计优化萎缩芽孢杆菌E20303发酵培养基配方及发酵条件。【结果】培养基最优发酵配方(g/L):淀粉10.72、酵母粉23.60、七水合硫酸镁16.00、碳酸钙1.14、磷酸二氢钾8.00和磷酸氢二钾16.00,优化后抑菌率由46.51%提高至62.00%;最优发酵条件为装液量102.89 mL、pH 8.64、温度28.73℃、转速200 r/min、培养时间3 d、接种量2%,优化后抑菌率由51.15%提高至72.51%。【结论】实验获得了对马铃薯干腐病病原菌的抑菌活性明显提高的萎缩芽孢杆菌E20303发酵配方及发酵条件,为马铃薯干腐病生防制...  相似文献   

4.
张慧  王健  陈宁 《生物技术通讯》2005,16(2):156-158
运用神经网络对L-缬氨酸发酵培养基组成进行建模,在神经网络模型的基础上采用遗传算法对培养基组成进行优化,得到最佳发酵培养基组成.结果表明,运用神经网络并结合遗传算法是一种行之有效的优化方法.按最佳发酵培养基组成进行发酵实验64h,可在发酵液中积累L-缬氨酸28.5g/L.  相似文献   

5.
基于遗传算法的羊肚菌液体发酵动力学模型的建立   总被引:1,自引:1,他引:0  
发酵动力学研究是实现发酵过程最优化控制及发酵过程放大的前提条件。本研究对羊肚菌液体深层发酵动力学进行了研究, 在Matlab软件平台上, 应用遗传算法对比了真菌生长较常用的Monod与Logistic方程在描述羊肚菌生长动力学时的优劣, 并对羊肚菌的生长、胞外多糖产生和基质消耗模型进行了参数估计。结果表明, Logistic方程与试验数据拟和情况更好, 并给出了羊肚菌液体深层发酵的动力学模型具体形式, 经验证, 模型的平均误差为5.8%。利用遗传算法选择羊肚菌动力学模型, 并进行参数估计与其他方法相比具有快速、搜索面广、接近全局最优解的特点, 在处理分批发酵动力学问题上具有不可比拟的优势, 发酵动力学模型的建立为发酵过程优化及放大奠定了基础。  相似文献   

6.
通过优化发酵过程中培养基的组成使得阿维链霉菌的发酵单位及有效组分Bla含量提高。采用单因子试验法及均匀设计试验法分析各种营养成分及其配比对阿维链霉菌Co39-15发酵单位和有效组分Bla含量的影响。获得最佳的种子培养基和发酵培养基配方,发酵单位及有效组分Bla含量比原来的发酵水平分别提高了20%~30%、8%~10%。利用单因子试验法及均匀设计试验法对抗生素的发酵培养基进行优化,是一种快速、效果显著的方法。  相似文献   

7.
为实现面包酵母的高密度发酵培养,构建一个BP神经网络模型,用于回归面包酵母高密度发酵培养基中显著影响因子与菌体密度之间的非线性关系,并在此基础上结合遗传算法进对此模型进行全局寻优,得到关键因子最佳浓度分别为:葡萄糖52.3 g/L,酵母浸出粉10.4 g/L,(NH4)2SO41.9 g/L.采用此优化配方进行摇瓶培养,所得菌体密度为3.95×108个/mL,比对照提高了61.2%.结果证实了人工神经网络的模拟和预测功能在微生物培养基优化方面有一定应用价值.  相似文献   

8.
利用豆制品生产过程中的废水(黄浆水)对枯萎病拮抗菌Pb-4菌株的发酵培养基及其发酵条件进行优化。通过单因素试验筛选Pb-4菌株黄浆水培养基中的碳源;设置因素水平为L_(18)(3~5)正交试验,对Pb-4菌株黄浆水培养基中最佳碳源和无机盐成分进行筛选和优化,确定发酵培养基配方;通过响应面优化试验对Pb-4菌株的发酵温度、p H和接种量进行优化。结果显示,通过筛选确定玉米粉为黄浆水培养基的最佳碳源;优化后的发酵培养基配方为:1 000 m L黄浆水中添加玉米粉30 g、(NH_4)_2SO_4 2g、Mg SO_4 1.5 g、CaCO_3 1.5 g和FeSO_4 0.3 g;优化后的发酵条件为:温度36.3℃、p H7.4、接种量5%、摇瓶培养40 h。在此优化条件下,发酵菌数可达42.8×10~8 CFU/m L、最大生物量OD_(660)值为0.393,与预测理论最大值0.390 2相吻合。优化后的发酵培养基能够替代蛋白胨、酵母粉和葡萄糖等常规培养基,具有简单、廉价和环保等特点,可作为微生物菌剂规模化生产的原料。  相似文献   

9.
目的:研究赭曲霉高密度培养的发酵培养基及条件,实现坎利酮的高转化.方法:选取廉价易得的培养基成分并进行优化,同时对发酵条件进行优化,得到了最优发酵培养基配方及培养条件.结果:发酵培养基最优配方为:葡萄糖20g/L,玉米浆20g/L,酵母膏20g/L,K2HPO4 2.5g/L.种子液最佳培养时间为24h,发酵培养基初始pH 5.8,接种量为8%,装液量200mL/1000mL,摇床转速为180 r/min,28℃,底物投料时间24h,发酵结束时间72 h.结论:将该工艺在7L发酵罐中放大,菌体密度达到25.36g/L,11α羟基坎利酮的转化率为86.1%.  相似文献   

10.
应用响应面优化设计法优化固体培养基配方,增大红色诺卡菌的固体培养细胞生物量。首先用Plackett-Burman法从现有培养基组分中找到影响红色诺卡菌细胞生物量的关键因素,再通过最陡爬坡法确定细胞生物量最大的配方,用作中心组合设计(Central Composite Design, CCD)实验的基础起始值,拟合数学模型方程,最后找到最优组分的组合。优化的配方转移至企业实施放大实验,对结果进行验证和比较。试验结果表明,培养基各组分中影响红色诺卡菌细胞生物量的关键因素为蛋白胨、NaCl、牛肉膏;最优固体培养基配方:蛋白胨42 g/L、牛肉膏8 g/L、NaCl 1.2 g/L、甘油10 mL/L、Na_2HPO_4·12H_2O 0.3 g/L、琼脂20 g/L。在细胞生物量方面最优固体培养基配方比原配方高104%。响应面优化设计可用于提高红色诺卡菌细胞生物量固体培养基的优化,也为红色诺卡菌培养条件、液体发酵的优化研究提供参考。  相似文献   

11.
Production of xylitol from xylose in batch fermentations of Candida mogii ATCC 18364 is discussed in the presence of glucose as the cosubstrate. Various initial ratios of glucose and xylose concentrations are assessed for their impact on yield and rate of production of xylitol. Supplementation with glucose at the beginning of the fermentation increased the specific growth rate, biomass yield and volumetric productivity of xylitol compared with fermentation that used xylose as the sole carbon source. A mathematical model is developed for eventual use in predicting the product formation rate and yield. The model parameters were estimated from experimental observations, using a genetic algorithm. Batch fermentations, which were carried out with xylose alone and a mixture of xylose and glucose, were used to validate the model. The model fitted well with the experimental data of cell growth, substrate consumption and xylitol production.  相似文献   

12.
粗糙脉孢菌(Neurospora crassa)木糖发酵的研究   总被引:8,自引:0,他引:8  
研究了不同通氧条件和培养基初始pH等对粗糙脉孢菌(Neurospora crassa)AS3.1602木糖发酵的影响。结果表明,粗糙脉孢菌具有较强的发酵木糖产生乙醇及木糖醇的能力。通气量对木糖发酵有较大的影响。乙醇发酵适合在半好氧条件下进行,此时乙醇的转化率达到63.2%。木糖醇发酵适合在微好氧的条件下进行,转化率达到31.8%。木糖醇是在培养基中乙醇达到一定浓度后才开始积累。培养基的初始pH对木糖发酵产物有较大的影响,乙醇产生最适pH5.0,木糖醇产生最适pH4.0。在培养基pH为碱性条件时,木糖发酵受到很大的抑制。初始木糖浓度对产物乙醇及木糖醇的产率有很大的影响。葡萄糖的存在会抑制木糖的利用,对乙醇和木糖醇的产生也有很大的影响。  相似文献   

13.
The possibility of predicting sluggish fermentations under oenological conditions was investigated by studying 117 musts of different French grape varieties using an automatic device for fermentation monitoring. The objective was to detect sluggish or stuck fermentations at the halfway point of fermentation.Seventy nine percent of fermentations were correctly predicted by combining data analysis and neural networks.  相似文献   

14.
Kim TB  Lee YJ  Kim P  Kim CS  Oh DK 《Biotechnology letters》2004,26(8):623-627
Long-term cell recycle fermentations of Candida tropicalis were performed over 14 rounds of fermentation. The average xylitol concentrations, fermentation times, volumetric productivities and product yields for 14 rounds were 105 g l–1, 333 h, 4.4 g l–1 h–1 and 78%, respectively, in complex medium; and 110 g l–1, 284 h, 5.4 g l–1 h–1 and 81%, respectively, in a chemically defined medium. These productivities were 1.7 and 2.4 times those with batch fermentation in the complex and chemically defined media, respectively. The xylitol yield from xylose with cell recycle fermentation using the chemically defined medium was 81% (w/w), which was 7% greater than the xylitol yield with batch fermentation (74%); both modes of fermentation gave the same yield using the complex medium. These results suggest that the chemically defined medium is more suitable for production of xylitol than complex medium.  相似文献   

15.
Nagata Y  Chu KH 《Biotechnology letters》2003,25(21):1837-1842
Artificial neural networks and genetic algorithms are used to model and optimize a fermentation medium for the production of the enzyme hydantoinase by Agrobacterium radiobacter. Experimental data reported in the literature were used to build two neural network models. The concentrations of four medium components served as inputs to the neural network models, and hydantoinase or cell concentration served as a single output of each model. Genetic algorithms were used to optimize the input space of the neural network models to find the optimum settings for maximum enzyme and cell production. Using this procedure, two artificial intelligence techniques have been effectively integrated to create a powerful tool for process modeling and optimization.  相似文献   

16.
试验设计和优化及其在发酵培养基优化中的应用   总被引:7,自引:0,他引:7       下载免费PDF全文
代志凯  张翠  阮征 《微生物学通报》2010,37(6):0894-0903
在发酵工业中,发酵培养基的优化对发酵水平的提高起着举足轻重的作用。而在寻求最佳发酵培养基的过程中,试验设计及统计优化发挥着重要作用。对近年来常用的试验设计及优化方法进行了综述,内容包括单因素轮换法、析因设计、均匀设计、响应面设计、人工神经网络和遗传算法等多种试验设计和优化方法,并对其进行分析和比较。  相似文献   

17.
AIMS: To evaluate the effect of phosphate buffer concentration on growth and xylitol production by Candida guilliermondii FTI 20037. METHODS AND RESULTS: Fermentations runs were carried out in batch mode employing semisynthetic medium supplemented with phosphate buffer at different concentrations (from 200 to 600 mmol l(-1)). The xylitol yield (Y(P/S)) and volumetric productivity (Q(P)) were improved when the fermentation medium was supplemented with phosphate buffer at concentration of 600 mmol l(-1). Under this condition (Y(P/S)) and (Q(P)) values were 0.75 g g(-1) and 0.66 g l(-1) h(-1), respectively, whereas in the absence of the phosphate buffer these values decreased to 0.52 g g(-1) and 0.44 g l(-1)h(-1) respectively. CONCLUSIONS: The use of phosphate buffer at 600 mmol l(-1) promoted an easier pH control during shake flasks fermentation of C. guilliermondii. In addition the xylitol yield and productivity were significantly improved in response to the supplementation of potassium phosphate in the medium. The increase in these parameters could be related to both osmotic effect and pH control. SIGNIFICANCE AND IMPACT OF THE STUDY: This approach provided a method for improving the xylitol production from semisynthetic medium by C. guilliermondii, being possible their use as a simple strategy to achieve efficient fermentation processes employing complex medium such as lignocellulosic hydrolysates.  相似文献   

18.
Aim: Modelling and optimization of fermentation factors and evaluation for enhanced alkaline protease production by Bacillus circulans. Methods and Results: A hybrid system of feed‐forward neural network (FFNN) and genetic algorithm (GA) was used to optimize the fermentation conditions to enhance the alkaline protease production by B. circulans. Different microbial metabolism regulating fermentation factors (incubation temperature, medium pH, inoculum level, medium volume, carbon and nitrogen sources) were used to construct a ‘6‐13‐1’ topology of the FFNN for identifying the nonlinear relationship between fermentation factors and enzyme yield. FFNN predicted values were further optimized for alkaline protease production using GA. The overall mean absolute predictive error and the mean square errors were observed to be 0·0048, 27·9, 0·001128 and 22·45 U ml?1 for training and testing, respectively. The goodness of the neural network prediction (coefficient of R2) was found to be 0·9993. Conclusions: Four different optimum fermentation conditions revealed maximum enzyme production out of 500 simulated data. Concentration‐dependent carbon and nitrogen sources, showed major impact on bacterial metabolism mediated alkaline protease production. Improved enzyme yield could be achieved by this microbial strain in wide nutrient concentration range and each selected factor concentration depends on rest of the factors concentration. The usage of FFNN–GA hybrid methodology has resulted in a significant improvement (>2·5‐fold) in the alkaline protease yield. Significance and Impact of the Study: The present study helps to optimize enzyme production and its regulation pattern by combinatorial influence of different fermentation factors. Further, the information obtained in this study signifies its importance during scale‐up studies.  相似文献   

19.
Summary In analysis of oil accumulation by the yeast Rhodotorula gracilis, fuzzy logic and neural networks were shown to be able to significantly reduce the number of experiments required in designing fermentation media. Fuzzy logic performed similarly, although slightly less accurately, than neural networks in predicting the outcome of shake flask experiments. In some instances having too many fuzzy rules decreased the accuracy of the technique, and further work is required to determine the criteria for achieving optimum performance from the fuzzy logic model. Overall fuzzy logic is a viable and useful tool for designing fermentation media.  相似文献   

20.
L Wang  D Wu  P Tang  X Fan  Q Yuan 《Carbohydrate polymers》2012,90(2):1106-1113
Polyurethane foam (PUF) was used as a carrier for Candida tropicalis (C. tropicalis) in the multi-batches fermentation of xylitol from xylose-containing corncob hemicellulose hydrolysate. After washing and sterilization, PUF (density of 320kgm(-3), specific surface area of 1.5-2.0×10(5)m(2)m(-3), average porosity of 95%, pore diameter of 0.03mm and cubic length of 5mm) was mixed with the culture medium at appropriate proportion followed by the inoculation. The fermentation parameters such as initial cell concentration, PUF dosage, pH value and temperature were controlled to study the effects on xylitol fermentation. In the 21-day durability tests, the optimal xylitol yield and volumetric productivity reached to 71.2% and 2.10gL(-1)h(-1) respectively. Moreover, the average xylitol yield and volumetric productivity were 66.3% and 1.90gL(-1)h(-1) for ten batchwise operations. The current research demonstrated that the PUF immobilization could serve as an efficient method for improving the cells vitality and enzyme reactivity in the continuous operation of fermentation.  相似文献   

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