Using soundscape recordings to estimate bird species abundance, richness, and composition

ABSTRACT Point counts are the most frequently used technique for sampling bird populations and communities, but have well‐known limitations such as inter‐ and intraobserver errors and limited availability of expert field observers. The use of acoustic recordings to survey birds offers solutions to these limitations. We designed a Soundscape Recording System (SRS) that combines a four‐channel, discrete microphone system with a quadraphonic playback system for surveying bird communities. We compared the effectiveness of SRS and point counts for estimating species abundance, richness, and composition of riparian breeding birds in California by comparing data collected simultaneously using both methods. We used the temporal‐removal method to estimate individual bird detection probabilities and species abundances using the program MARK. Akaike's Information Criterion provided strong evidence that detection probabilities differed between the two survey methods and among the 10 most common species. The probability of detecting birds was higher when listening to SRS recordings in the laboratory than during the field survey. Additionally, SRS data demonstrated a better fit to the temporal‐removal model assumptions and yielded more reliable estimates of detection probability and abundance than point‐count data. Our results demonstrate how the perceptual constraints of observers can affect temporal detection patterns during point counts and thus influence abundance estimates derived from time‐of‐detection approaches. We used a closed‐population capture–recapture approach to calculate jackknife estimates of species richness and average species detection probabilities for SRS and point counts using the program CAPTURE. SRS and point counts had similar species richness and detection probabilities. However, the methods differed in the composition of species detected based on Jaccard's similarity index. Most individuals (83%) detected during point counts vocalized at least once during the survey period and were available for detection using a purely acoustic technique, such as SRS. SRS provides an effective method for surveying bird communities, particularly when most species are detected by sound. SRS can eliminate or minimize observer biases, produce permanent records of surveys, and resolve problems associated with the limited availability of expert field observers.     

Does the presence of an observer affect a bird's occurrence rate or singing rate during a point count?

The approach or presence of an observer may affect the behavior of nearby birds, rendering them either more or less detectable than when no observer is present due to a change in singing rates. To test whether there are systematic detection biases associated with the presence of an observer during point count bird surveys, we compared the occurrence and singing rates of birds during a 10-min period immediately preceding the time when an observer arrived to conduct a count and during the formal count itself by extracting song information from autonomous sound recorders. We obtained recordings of 36 species of birds detected at ≥5 locations in one of three vegetation types, including burned conifer forest, green conifer/riparian streamside forest, and riparian bottomland/marshland. We found that species richness and both the probability of occurrence and singing rate for any of the species recorded were unaffected by the presence of an observer. In addition, the probability of occurrence did not differ significantly among four 2.5-min recording sessions during 10-min counts when an observer was present. Thus, the presence of an observer did not appear to introduce any detectable systematic bias that would make bird lists or unadjusted occurrence rates inaccurate on that basis alone. In addition, rates of bird occurrence across 2.5-min temporal subsets of a 10-min count did not vary in a systematic way that would violate the assumption of equal occupancy across adjacent time periods as sometimes used to build detection histories in occupancy modeling.     

Comparison of acoustic and traditional point count methods to assess bird diversity and composition in the Aberdare National Park,Kenya

Afromontane forests, like those in the Aberdare National Park (ANP) in Kenya, sustain unique avifaunal assemblages. There is a growing need for biodiversity inventories for Afromontane forests, especially through the utilisation of unskilled observers. Acoustic surveys are a potential aid to this, but more comparisons of this technique with that of traditional point counts are needed. We conducted a systematic survey of the ANP avifauna, assessing whether acoustic and traditional surveys resulted in different species richness scores, and whether this varied with habitat and species characteristics. We also investigated the role of habitat and elevation in driving variation in species richness. The ANP provides habitat types including scrub, moorland, montane, hagenia and bamboo forests. Overall, the surveys yielded 101 identified species. The acoustic method resulted in higher species richness scores compared to the traditional method across all habitats, and the relative performance of the two methods did not vary with habitat type or visibility. The methods detected different species, suggesting that they should be used together to maximise the range of species recorded. We found that habitat type was the primary driver of variation in species richness, with scrub and montane forest having higher species richness scores than other habitats.     

Influence of grazing and fire on breeding birds and perennial plants in Cyprus scrub and forest systems

Grazing and browsing by sheep and goats has been an important anthropogenic influence on ecosystems in the Mediterranean region for centuries. This influence has changed significantly in recent decades, with a general shift from range grazing to the penning of animals. The intermediate disturbance hypothesis (IDH) proposes that perturbation - including anthropogenic disturbance - is the norm for Mediterranean ecosystems, and that higher species diversity is found under conditions of continuous, moderate disturbance. Here we test the IDH as it relates to grazing of scrub and open forest habitats in Cyprus, while also testing for the effects of fire. We carried out surveys of breeding birds and vegetation at 48 study sites in scrub and open woodland across Cyprus. We estimated relative grazing pressure (past and present) and fire history at these sites, and tested for associations between these factors, breeding bird species richness and perennial vegetation diversity. We found moderate current grazing reduces density of lower and middle level scrub, and a higher level of diversity of perennial vegetation at moderately over intensively grazed sites. We found that moderate historical grazing pressure had a positive influence on richness of breeding bird species in lower scrub habitat such as phrygana, but that this effect was weaker the taller and denser the habitat. By contrast, current grazing pressure had a negative effect on species richness in lower scrub, but species richness in grazed habitats was higher in denser, taller scrub habitat such as garrigue and maquis. Our study suggests grazing plays an important role in maintaining habitat heterogeneity but the impact on avian species richness depends on the density and height of the vegetation.     

Agroforestry Systems as Habitat for Avian Species: Assessing Its Role in Conservation

In the current scenario of rapid conversion of tropical forests into human-dominated activities landscape, the present study was undertaken to understand the role of existing agroforestry systems in conservation of avian species. Three types of agroforestry systems namely tea gardens, homegardens and agrisilviculture were selected in the Brahmaputra North Bank Landscape of Assam, northeast India for the study. A total of 468 point counts revealed 164 bird species belonging to 51 families and 18 orders across all the three different types of agroforestry systems. Tea gardens showed significantly higher bird species richness followed by homegardens and agrisilviculture systems. As per IUCN, four species were categorized as Near Threatened and one species was categorized as Vulnerable. Out of 164 species recorded, 68.3% species were residents, 30.5% species were winter visitors and remaining were summer visitors (1.2%). Majority of the species (45.7%) were common to all the three types of selected agroforestry systems. The feeding guilds revealed that most of the species were insectivorous (50.0%) in habit. A total of 167 tree species belonging to 54 families and 24 orders was recorded across all the three different types of agroforestry systems. The highest tree species richness was recorded in the homegardens (160), followed by agrisilviculture systems (19) and least in tea gardens (11). No statistically significant correlation was found among bird species richness and patch size, tree species richness and number of bird species individuals. The selected agroforestry systems have provided shelter, nesting space, feeding and foraging grounds for birds during the winter season. This data can be useful for the policy makers, tea garden managers, homegarden owners for framing conservation policies of avian species in an era of natural wildlife habitat loss and degradation.     

Birds,Cattle, and Bracken Ferns: Bird Community Responses to a Neotropical Landscape Shaped by Cattle Grazing Activities

Large areas of tropical moist forests have been converted to cattle pastures, generating complex landscapes where different habitats are represented by small patches with an uneven spatial distribution. Here, we describe how bird communities respond to the different elements present in a livestock landscape that was originally dominated by tropical moist forest. We surveyed six habitats: open pastures, pastures with shrubs, early‐ and middle‐secondary forests, mature forest, and pastures invaded by bracken ferns (Pteridium aquilinum). Bird diversity was high in secondary and mature forests, and low in fern‐invaded sites and open pastures. Fern‐dominated sites had the lowest bird species richness, and trophic guild diversity of all habitats. Habitat structure affected both bird species richness and densities in similar ways. Tree species richness was the habitat attribute that had a bigger positive effect on bird species richness. Bird community structure varied among sampled habitats, separating habitats in two major groups (forests and pastures). Our data indicate that bracken fern‐invaded pastures were the worst habitat condition for avian communities. To increase bird diversity, we recommend to eliminate or manage bracken fern and to increase shrub and tree cover in open pastures to provide food resources and shelter for birds. Finally, we encourage the maintenance of secondary and mature forest remnants as a strategy to conserve resident birds within a landscape dominated by livestock activities.     

Bird community composition across an Andean tree‐line ecotone

Few studies have found strong evidence to suggest that ecotones promote species richness and diversity. In this study we examine the responses of a high‐Andean bird community to changes in vegetation and topographical characteristics across an Andean tree‐line ecotone and adjacent cloud forest and puna grassland vegetation in southern Peru. Over a 6‐month period, birds and vegetation were surveyed using a 100 m fixed‐width Distance Sampling point count method. Vegetation analyses revealed that the tree‐line ecotone represented a distinctive high‐Andean vegetation community that was easily differentiated from the adjacent cloud forest and puna grassland based on changes in tree‐size characteristics and vegetation cover. Bird community composition was strongly seasonal and influenced by a pool of bird species from a wider elevational gradient. There were also clear differences in bird community measures between tree‐line vegetation, cloud forest and puna grassland with species turnover (β‐diversity) most pronounced at the tree‐line. Canonical Correspondence Analysis revealed that the majority of the 81 bird species were associated with tree‐line vegetation. Categorizing patterns of relative abundance of the 42 most common species revealed that the tree‐line ecotone was composed primarily of cloud forest specialists and habitat generalists, with very few species from the puna grassland. Only two species, Thlypopsis ruficeps and Anairetes parulus, both widespread Andean species more typical of montane woodland vegetation edges, were categorized as ecotone specialists. However, our findings were influenced by significant differences in species detectability between all three vegetation communities. Our study highlights the importance of examining ecotones at an appropriate spatial and temporal scale. Selecting a suitable distance between sampling points based on the detection probabilities of the target bird species is essential to obtain an unbiased picture of how ecotones influence avian richness and diversity.     

Avian Habitat Preference in Tropical Forest Restoration in Southern Costa Rica

An important question for tropical forest restoration is whether degraded lands can be actively managed to attract birds. We censused birds and measured vegetation structure at 27 stations in young (6–9‐yr old) actively and passively restored pasture and old growth forest at Las Cruces Biological Station in southern Costa Rica. During 481 10‐min point counts, we detected a high diversity—186 species—of birds using the restoration area. Surprisingly, species richness and detection frequency did not differ among habitats, and proportional similarity of bird assemblages to old growth forest did not differ between restoration treatments. Bird detection frequency was instead explained by exotic grass cover and understory stem density—vegetation structures that were not strongly impacted by active restoration. The similarity of bird assemblages in actively and passively restored forest may be attributed to differential habitat preferences within and among feeding guilds, low structural contrast between treatments, or the effect of nucleation from actively restored plots into passively restored areas. Rapid recovery of vegetation in this recently restored site is likely due to its proximity to old growth forest and the lack of barriers to effective seed dispersal. Previous restoration studies in highly binary environments (i.e., open pasture vs. tree plantation) have found strong differences in bird abundance and richness. Our data contradict this trend, and suggest that tropical restoration ecologists should carefully consider: (1) when the benefits of active restoration outweigh the cost of implementation; and (2) which avian guilds should be used to measure restoration success given differential responses to habitat structure.     

Local‐ and landscape‐level effects of land use change on bird diversity in Abiata‐Shalla Lakes National Park,Ethiopia

Understanding the effects of anthropogenic disturbances on biodiversity is important for conservation prioritization. This study examined the effects of vegetation degradation on bird diversity in Abiata‐Shalla Lakes National Park, Ethiopia. We surveyed birds and vegetation structure between January and March 2015 in disturbed (impacted by settlement and agriculture) and undisturbed (not impacted) transects of two vegetation types (savannah woodland and gallery forest). We compared between disturbed and undisturbed transects at local (within vegetation types) and landscape (across vegetation types) levels: (a) avian species richness of the entire assemblage and feeding guilds and (b) species assemblage composition. We found significantly greater mean and total bird species richness of the entire assemblage and insectivore and granivore feeding guilds in the undisturbed transects, while the nectarivore guild was totally absent in the disturbed transects. We also found significant differences in bird species assemblage composition between the disturbed and undisturbed transects both within and across the vegetation types, and bird species assemblage composition at the landscape level was positively correlated with tree abundance and understorey vegetation height. In conclusion, our results demonstrate and add to the increasing body of evidence concerning the adverse effects of human‐induced vegetation change on bird diversity.     

High Bird Species Diversity in Structurally Heterogeneous Farmland in Western Kenya

Tropical ecosystems are globally important for bird diversity. In many tropical regions, land‐use intensification has caused conversion of natural forests into human‐modified habitats, such as secondary forests and heterogeneous agricultural landscapes. Despite previous research, the distribution of bird communities in these forest‐farmland mosaics is not well understood. To achieve a comprehensive understanding of bird diversity and community turnover in a human‐modified Kenyan landscape, we recorded bird communities at 20 sites covering the complete habitat gradient from forest (near natural forest, secondary forest) to farmland (subsistence farmland, sugarcane plantation) using point counts and distance sampling. Bird density and species richness were on average higher in farmland than in forest habitats. Within forest and farmland, bird density and species richness increased with vegetation structural diversity, i.e., were higher in near natural than in secondary forest and in subsistence farmland than in sugarcane plantations. Bird communities in forest and farmland habitats were very distinct and very few forest specialists occurred in farmland habitats. Moreover, insectivorous bird species declined in farmland habitats whereas carnivores and herbivores increased. Our study confirms that tropical farmlands can hardly accommodate forest specialist species. Contrary to most previous studies, our findings show that structurally rich tropical farmlands hold a surprisingly rich and distinct bird community that is threatened by conversion of subsistence farmland into sugarcane plantations. We conclude that conservation strategies in the tropics must go beyond rain forest protection and should integrate structurally heterogeneous agroecosystems into conservation plans that aim at maintaining the diverse bird communities of tropical forest‐farmland mosaics.     

Land use types influenced avian assemblage structure in a forest–agriculture landscape in Ghana

The conservation of biodiversity within tropical forest regions does not lie only in the maintenance of natural forest areas, but on conservation strategies directed toward agricultural land types within which they are embedded. This study investigated variations in bird assemblages of different functional groups of forest‐dependent birds in three agricultural land types, relative to distance from the interior of 34 tropical forest patches of varying sizes. Point counts were used to sample birds at each study site visited. Data from counts were used to estimate species richness, species evenness, and Simpson's diversity of birds. Mean species richness, evenness, and diversity were modeled as responses and as a function of agricultural land type, distance from the forest interior and three site‐scale vegetation covariates (density of large trees, fruiting trees, and patch size) using generalized linear mixed‐effect models. Mean observed species richness of birds varied significantly within habitat types. Mean observed species richness was highest in forest interior sites while sites located in farm centers recorded the lowest mean species richness. Species richness of forest specialists was strongly influenced by the type of agricultural land use. Fallow lands, density of large trees, and patch size strongly positively influenced forest specialists. Insectivorous and frugivorous birds were more species‐rich in fallow lands while monoculture plantations favored nectarivorous birds. Our results suggest that poor agricultural practices can lead to population declines of forest‐dependent birds particularly specialist species. Conservation actions should include proper land use management that ensures heterogeneity through retention of native tree species on farms in tropical forest‐agriculture landscapes.     

Bird species richness in vegetation fences and in strips of residual rain forest vegetation at Los Tuxtlas, Mexico

Fragmentation of the lowland tropical rain forest has resulted in loss of animal and plant species and isolation of remaining populations that puts them at risk. At Los Tuxtlas, Mexico, lowland rain forests are particularly diverse in the avian fauna they contain and while most of the forests have been fragmented by human activity, many of the fragments still harbor diverse assemblages of bird species. In these landscapes, linear strips of residual rain forest vegetation along streams as well as linear strips of vegetation fences (live fences) crossing the pastures might provide some connectivity to bird populations existed in forest fragments. We investigated bird species richness and relative abundance in one 6-km long section of live fences (LF) bordering a dirt road and in two 6-km long sections of residual forest vegetation along a river (MR) and one permanent stream (BS). We used point count procedures which resulted in the count of 2984 birds representing 133 species. At the LF site we detected 74% of the species, 72% at the BS site and 57% at the MR site. Only 38% of the species were common among sites. Neotropical migratory birds accounted for 34–41% of the species counted at all sites. While edge and open habitat birds accounted for 6–10% of the species and for 50% of the records at the three vegetation strips, about 90% of the species were forest birds. Distance to forest fragments and degree of disturbance of the vegetation seemed to negatively influence bird species presence at the BS and MR strips. Rarefaction analysis indicated that the LF strip was richer in species than the other two sites, but the occurrence of the three vegetation strips in the landscape seem to favor the presence of many more species. We discuss the value of these vegetation strips to birds as stepping stones in the fragmented landscape.     

Assessment of census techniques for interspecific comparisons of tropical rainforest bird densities: a field evaluation in the Western Ghats, India

Studies comparing different bird censusing methods are useful for assessing relative biases, synthesizing data across studies, and designing bird population monitoring programmes. A field study was carried out in mid-elevation tropical rainforest in the Western Ghats to compare bird density estimates from line transect, point count and territory spot-mapping methods. Interspecific comparisons were made using data for 13 common resident bird species, including two endemics. Variable-width line transect density estimates were highly correlated with, but slightly (17%) higher than, those produced by territory spot-mapping. Although densities from variable-width point counts and spot-mapping were highly positively correlated, the estimates were 95% higher on average in the former. Higher density estimates relative to spot-mapping were produced mainly for the most abundant species, probably due to their mobility and the inclusion of additional individuals that enter the count area during the count period. Fixed-width strip transects and point counts produced density estimates that were highly correlated with, but significantly lower than, variable-width estimates. Wherever possible, territory spot-mapping and line transects are recommended for density estimates; the former may yield additional information on spatial distribution of birds. Fixed-width transects or point counts, being easier to apply, may be used for large-scale monitoring programmes. Interspecific variation in flocking systems and the poor visibility in dense rainforest vegetation indicate the need for care in collection of data on flock size and its variation, which is necessary for estimating the density of individuals. The variation across methods suggests the need for further research using multiple methods across years and marked individuals to verify territoriality and accuracy.     

Are bird density,species richness and community structure similar between native woodlands and non-native plantations in an area with a generalist bird fauna?

This study compared the bird assemblages of native semi-natural woodlands and non-native Sitka spruce (Picea sitchensis) plantations in Ireland to identify what vegetation variables most influenced birds and to identify management targets in plantations to maximise future bird conservation. Point counts were conducted in 10 Oak (Quercus spp.) and 10 Ash (Fraxinus excelsior) native woodlands and in five Mid-rotation (20–30 years old) and five Mature (30–50 years old) Sitka spruce plantations. Ordination was used to characterise woodland types according to their constituent bird species. Total bird density (calculated using Distance software) and species richness were assessed for the different woodland types. Oak and Ash woodland bird assemblages were separated from Mid-rotation and Mature plantations by the ordination. There was no difference in total bird density between any of the woodland types. Oak woodlands had significantly higher species richness than either Mid-rotation or Mature Sitka spruce plantations. Ash had higher species richness than Mature Sitka spruce plantations. Understorey vegetation was negatively associated with total bird density, which also varied with survey year. Understorey vegetation was positively associated with species richness. Reasons for the relationships between vegetation and bird assemblages are discussed. Management should seek to increase shrub and understorey vegetation in the Mid-rotation phase to improve the contribution of plantations to bird conservation.     

Genomic footprints of adaptation in a cooperatively breeding tropical bird across a vegetation gradient

Identifying the genetic basis of phenotypic variation and its relationship with the environment is key to understanding how local adaptations evolve. Such patterns are especially interesting among populations distributed across habitat gradients, where genetic structure can be driven by isolation by distance (IBD) and/or isolation by environment (IBE). Here, we used variation in ~1,600 high‐quality SNPs derived from paired‐end sequencing of double‐digest restriction site‐associated DNA (ddRAD‐Seq) to test hypotheses related to IBD and IBE in the Yucatan jay (Cyanocorax yucatanicus), a tropical bird endemic to the Yucatán Peninsula. This peninsula is characterized by a precipitation and vegetation gradient—from dry to evergreen tropical forests—that is associated with morphological variation in this species. We found a moderate level of nucleotide diversity (π = .008) and little evidence for genetic differentiation among vegetation types. Analyses of neutral and putatively adaptive SNPs (identified by complementary genome‐scan approaches) indicate that IBD is the most reliable explanation to account for frequency distribution of the former, while IBE has to be invoked to explain those of the later. These results suggest that selective factors acting along a vegetation gradient can promote local adaptation in the presence of gene flow in a vagile, nonmigratory and geographically restricted species. The putative candidate SNPs identified here are located within or linked to a variety of genes that represent ideal targets for future genomic surveys.     

Diversity, ecological structure, and conservation of the landbird community of Dadia reserve, Greece

Birds are integral to many environmental monitoring schemes. However, there has been little research on the ecological basis of utilizing bird species as indicators of their respective communities and habitats. We used point counts to survey 72 landbird species, 16 of conservation concern, in the Dadia Nature Reserve, Greece, in order to understand the ecology of bird diversity patterns, analyse community composition, identify species characteristic of major vegetation types, and improve long-term management and monitoring protocols. We sampled 36 sites representing 21 vegetation types. Highly heterogeneous sites were the most species rich and rural mosaics (small fields and pastures of low intensity land use, separated by thick hedgerows and tree lines) were twice as rich as intensified crop monocultures. Using multivariate analysis, we found that vegetation cover and height affected the composition of the avifauna. Twenty-one predefined vegetation categories clustered into eight distinct bird habitat types: field crops, rural mosaics, mosaic sites, poplar trees, broadleaved woods, pinewoods, shrubs, and heaths. Ten bird species were highly characteristic of the main bird habitat types in the study area. Our results emphasize the importance of conserving rural mosaics, hedgerows, and openings within forests for landbird conservation in the Mediterranean countryside. We also provide evidence in support of maintaining horizontal heterogeneity at a local scale. Finally, we suggest that monitoring populations of certain indicator bird species can be a cost-effective and efficient way to monitor the state and habitat quality of the entire landbird community, thereby integrating the knowledge of community structure into conservation decision-making.     

Variable effect of playback of chickadee mobbing calls on detection probability of boreal forest birds

Modification of the point count survey method to include playback of songbird mobbing calls in an attempt to increase detection probabilities has met with mixed success. We compared detection probabilities for boreal forest songbirds using traditional point count methods and counts using broadcasts of the mobbing calls of Black‐capped Chickadees (Poecile atricapillus) in an attempt to increase detection probability. We conducted 594 point counts during the 2010 breeding season in Newfoundland, Canada. Each point count consisted of an 8‐min silent observation period followed by an 8‐min broadcast of Black‐capped Chickadee mobbing calls. Occupancy model results showed that response to playback broadcast varied across species, with detection probabilities higher for seven of 17 species during the silent portions of point counts and three species more likely to be detected during playback intervals. For all species, the number of visual detections increased during periods of playback and, averaged across species, individuals were >6 times more likely to be seen during the playback period than during the silent period. Differences in detection probability among observers were apparent during both silent and playback periods. We suggest that using playback of chickadee mobbing calls during point count surveys of common boreal forest songbird species may be most beneficial when visual detection is important. However, playback may also be useful for species‐specific surveys during periods when birds are less likely to be vocal or for studies of less common species with chronically low detection probabilities. A combined silent and playback approach could also be useful, although observer and species differences should be accounted for if comparing data across species or studies.     

Validating bird diversity indicators on farmland in east-central Alberta,Canada

Birds can be used as indicators to monitor success of programs encouraging prairie landowners to increase biodiversity. Using a case study from Alberta, Canada, this paper compares bird diversity measures at the farm scale and examines their consistency across different habitat types to test for design, output, and end use validation. Based on 2005 point count data (two types) from 178 sites at 22 farms, we calculated bird species richness, abundance, Shannon index, and Inverse Simpson index.The 50 m radius data produced species richness and abundance measures about half the size as those produced by the unlimited radius data. The bird diversity measures were consistent across habitat types. The 50 m radius data showed differences among 3–5 habitat types, whereas the unlimited radius data showed differences between only two habitat types. Using any bird diversity measure, the wetland/riparian habitat scored highest, followed by homestead, upland forest, native prairie, tame pasture, and cultivated land habitats.Bird monitoring methods should favor fixed over unlimited radius point counts, because of the former's greater discriminating ability. Given that diversity measures are consistent across habitats and are highly correlated, the species richness measure, which is simple and easy to understand, can be used in conversations with landowners and policy-makers.     

The Effects of Cropping Systems on Avian Communities in Cacao and Banana Agro‐Forestry Systems of Talamanca,Costa Rica

Multispecies agro‐forestry is generally lauded for providing ecosystem services, especially in tropical environments. Avian communities contribute to services such as biodiversity and pest management. Characterizing and evaluating avian community composition in similar cropping systems will help optimize management for ecosystem services. We examined the relationship between cropping system vegetation and avian communities in four shaded agro‐forestry systems common to the Limón province of Costa Rica: abandoned and managed systems of cacao, cacao with banana, and banana. During two field seasons, we detected 2605 birds from 106 species and identified 2791 trees and shrubs from 62 morphospecies. We compared vegetation and avian species richness across systems with mixed‐effects linear models. Canopy, understory, and groundcover vegetation differed among agro‐forestry systems. More ground‐ and understory‐foraging forest species were detected in agro‐forestry systems lacking banana, whereas richness of agricultural generalist species was highest in systems with banana. Richness of understory‐ and ground‐foraging species correlated with understory tree species richness and leaf litter. Our results indicate that shaded cacao and banana systems can have similar canopy‐foraging species richness that includes both agricultural and woodland generalist species, but that interspersing banana with cacao can adversely influence understory forest bird community composition. Agro‐forests with diverse understory vegetation support more understory‐foraging bird species that have proven valuable in pest management. Abstract in Spanish is available at http://www.blackwell‐synergy.com/loi/btp .     

Detecting tropical nocturnal birds using automated audio recordings

ABSTRACT Nocturnal bird assemblages are poorly known in most tropical locations, and information about their presence and behavior is often limited to the results of dawn or dusk surveys. We investigated the use of manual‐ and automatic‐detection methods to identify nocturnal birds in acoustic recordings made at Soberania National Park, Republic of Panama. Five nocturnal species were detected in dusk recordings, and a sixth species (Great Potoo, Nyctibius grandis) was detected only after dark. Automatic data template detectors (DTD's) were developed and used to detect Crested Owls (Lophostrix cristata), Black‐and‐White Owls (Ciccaba nigrolineata), Vermiculated Screech‐Owls (Megasops guatemalae), and Great Potoos. Manual analysis of 300 h of overnight recordings allowed us to quantify DTD performance. Sensitivity, the proportion of known calls of target species identified by DTDs, ranged from 0.17 for Black‐and‐White Owls to 0.79 for Vermiculated Screech‐Owls. Positive predictive value, the proportion of detected sounds that corresponded to the target species, ranged from 0.39 for Black‐and‐White Owls to 0.60 for Crested Owls. Our results demonstrate that a combination of manual and automated analysis of audio recordings can provide a verifiable, systematic method to determine the presence of nocturnal birds in tropical forests, investigate temporal activity, and calculate detection probability.