漂白前后塔拉纤维剩余物的酶动力学分析

对塔拉纤维剩余物和漂白塔拉纤维剩余物的酶动力学进行了研究,采用Lineweaver-Burk双倒数法对底物样品浓度倒数和酶促反应速度倒数作图构建米氏方程,通过计算两种底物的K_m值,即塔拉纤维剩余物K_m为12.73 mg·mL^-1,漂白塔拉纤维剩余物K_m为192 mg·mL^-1,表明塔拉纤维剩余物比漂白后的塔拉纤维剩余物更适合做纤维素酶的酶解底物;红外光谱图分析表明漂白塔拉纤维剩余物中木质素成分含量明显降低。     

GH42家族保守氨基酸位点累积突变对Geobacillus stearothermophilus来源β-半乳糖苷酶BgaB催化活性的影响

【背景】β-半乳糖苷酶转糖苷活性弱,产物低聚半乳糖(galactooligosaccharides, GOS)易被水解,致其催化得率普遍较低。【目的】以GH42家族Geobacillus stearothermophilus来源β-半乳糖苷酶BgaB为对象,探讨家族保守氨基酸位点突变对β-半乳糖苷酶BgaB催化活性的影响。【方法】在单点突变体功能研究基础上,采用定点突变与化学修饰相结合的方法,对保守氨基酸位点E303与F341进行累积突变。【结果】与野生型酶相比,所构建双点突变体Ox-E303C/F341S水解活性降低为30%;GOS最大得率由0.75%提高到19.50%。【结论】家族保守氨基酸位点累积突变能够使单点突变体功能得到共同进化,降低β-半乳糖苷酶水解活性和底物抑制作用,能够提高其转糖苷催化活性。     

发酵乳杆菌来源l-阿拉伯糖异构酶理性设计及在d-塔格糖生产中的应用

L-阿拉伯糖异构酶(L-arabinose isomerase,L-AI)是D-半乳糖异构化生成D-塔格糖的关键酶。为提高L-阿拉伯糖异构酶对D-半乳糖的活性及在生物转化中的转化率,本研究对发酵乳杆菌(Lactobacillus fermentum)CGMCC2921来源的L-阿拉伯糖异构酶进行重组表达和生物转化应用,并对其底物结合口袋进行理性设计以提高酶对D-半乳糖亲和力和催化活性。结果显示,突变体F279I对D-半乳糖的转化率提高至野生型酶的1.4倍,进一步叠加获得的双突变体M185A/F279I的K_m和k_cat分别为530.8mmol/L与19.9s^-1,底物亲和力显著提高,催化效率提高至野生型酶的8.2倍。以400 g/L乳糖为底物时,突变酶M185A/F279I转化率高达22.8%。本研究在乳糖高值化生产塔格糖方面具有重要的应用价值。     

兔肠道大豆异黄酮还原菌株的分离鉴定及其转化特性

【目的】从兔新鲜粪样中分离对大豆异黄酮黄豆苷原和染料木素具有转化作用的特定细菌菌株。【方法】在厌氧工作站内对獭兔新鲜粪样进行梯度稀释后涂板,挑取单菌落与底物黄豆苷原和染料木素分别厌氧混合培养,用高效液相色谱检测底物被转化情况。【结果】分离得到一株对大豆异黄酮黄豆苷原和染料木素均具有转化作用的革兰氏阳性严格厌氧细菌菌株AUH-JLR41(KJ188150)。根据产物的高效液相保留时间、紫外吸收图谱和质谱分析结果,将菌株AUH-JLR41代谢底物黄豆苷原和染料木素生成的产物分别鉴定为二氢黄豆苷原和二氢染料木素。经手性高效液相系统检测,产物二氢黄豆苷原和二氢染料木素均呈现两个等面积物质峰,表明这两个产物的对映体过量率均为0。通过转化动态研究发现,菌株AUH-JLR41分别在底物黄豆苷原和染料木素加入48 h和72 h后将底物全部转化为产物,该菌株能转化底物黄豆苷原和染料木素的最大浓度均为0.6 mmol/L。经BLAST比对,菌株AUH-JLR41的16S r RNA基因序列与斯奈克氏菌属菌株Slackia equolifaciens DZE(EU377663)的相似性高达99.6%。【结论】兔肠道分离的斯奈克氏菌属菌株Slackia sp.AUH-JLR41在厌氧条件下能将大豆异黄酮黄豆苷原和染料木素分别还原为二氢黄豆苷原和二氢染料木素。     

Met196突变提高Brucella melitensis 7α-羟基类固醇脱氢酶的催化效率和稳定性

【目的】通过计算机辅助设计,理性提高羊布鲁氏菌7α-羟基类固醇脱氢酶的催化效率和稳定性,实现酶的高效稳定催化合成。【方法】通过同源建模、分子对接和蛋白-配体相互作用分析,理性设计关键位点的定向突变。结合酶学性质测定、酶促反应动力学分析和圆二色谱测定等实验,测定突变酶的催化功能和稳定性。【结果】与野生型7α-羟基类固醇脱氢酶相比,Met196Ile和Met196Val突变酶的酶活提高了8.33倍和7.41倍,k_cat/K_m值分别提高了4.93和4.37倍,T_m值分别提高了1.75℃和1.10℃。Met196Ile和Met196Val突变酶催化底物鹅去氧胆酸,合成产物7-氧代-石胆酸所需时间从野生型的8h缩短为2h,最高产率约为91%。通过全原子动力学模拟分析了均方根偏差、均方根波动以及蛋白-配体相互作用,阐明了催化性能提高的分子机制。Met196突变诱导的B环（残基Ala145-Pro157）和α7螺旋（残基Val249-Gly265）的刚性增强有利于提高蛋白的稳定性,底物与结合位点或活性位点（Tyr208、Lys212）...     

Leifsonia sp.ZF2019中一种新型耐木糖β-木糖苷酶的表达与特征

【目的】从栀子灰蝶幼虫分离的Leifsonia sp. ZF2019菌株中克隆表达出一种新型β-木糖苷酶Xyl4900,并研究其酶学性质,以期为开发适用于工业生产的β-木糖苷酶提供参考。【方法】采用生物信息学分析技术分析Leifsonia sp. ZF2019菌株的β-木糖苷酶Xyl4900基因并在大肠杆菌中表达了该基因,纯化并研究了其酶学性质。【结果】Xyl4900与GH3家族的β-葡萄糖苷酶同源性高,但带有β-木糖苷酶结构域,可特异性水解对硝基苯基β-D-吡喃木糖苷（p NPX）,是一种新型β-木糖苷酶。酶学特性分析显示,Xyl4900在45℃和pH 7.0的条件下酶活性最高,且在pH 6.0–9.0的范围内孵育14 h,仍保持80%以上的酶活力。除Cu²⁺外,其他金属离子（2.5 mmol/L）对Xyl4900酶活力无明显影响,且对低浓度有机溶剂（5%V/V）有较强耐受性。此外,在20%（W/V） NaCl或100mmol/L木糖溶液中Xyl4900的酶活性仍高于50%,表现出较好的盐和木糖耐受性。动力学参数分析显示,Xyl4900的K_m     

随机-半理性组合突变改造ω-转氨酶催化合成(R)-1-(1-萘基)乙胺

(R)-1-(1-萘基)乙胺是合成拟钙剂药物盐酸西那卡塞的关键手性中间体,利用ω-转氨酶不对称还原1-萘乙酮合成(R)-1-(1-萘基)乙胺具有较好的应用前景。文中针对节杆菌属Arthrobacter sp.来源的ω-转氨酶,采用随机突变和半理性设计相结合的策略,获得了催化效率和热稳定性提高的突变酶F225M、C281I和F225M/C281I。与WT相比,双突变体F225M/C281I的kcat提高85%,Km下降56%,催化效率kcat/Km提高3.42倍。此外,F225M/C281I催化10mmol/L1-萘乙酮反应24h的转化率提高了22%。分子对接和分子动力学模拟结果表明,F225M/C281I相比于WT增加了与底物1-萘乙酮之间的Pi-Pi相互作用力,导致其催化效率的提高;而且突变酶F225M/C281I的134–139位点残基的均方根波动(RMSF)相比WT明显降低,与半衰期的略微提高相关。     

嗜碱芽孢杆菌C-125木糖苷酶基因的表达与酶特征鉴定

嗜碱芽孢杆菌(Bacillus halodurans)C-125菌株的基因组中,一个编码木糖苷酶的基因(BH1068)被克隆并在大肠杆菌中获得高效表达。通过全面分析纯化蛋白,确证了它的木糖苷酶功能。该酶在pH4～9的范围内保持稳定,最适pH值为中性,有较宽的最适温度(35°C～45°C),且能在45°C范围内保持稳定。这些特性使得该酶可在较为宽广的条件下对木聚糖进行酶促降解。该酶对人工合成底物对硝基苯-β-木糖苷(p-nitrophenyl-β-xylose,pNPX)的比活力为174mU/mg蛋白质,且木糖对其反馈抑制较弱(抑制常数Ki为300mmol/L)。结果显示该酶是活性较高且较耐木糖抑制的细菌源木糖苷酶。该酶与商品化的木聚糖酶一起水解山毛举木聚糖(Beechwood xylan)时显示了增效作用,且水解率可获40%。该酶最适pH为中性,对木糖耐受等特性与大多数来源于真菌、最适pH为酸性、对木糖敏感的木糖苷酶将有较好的互补。结果表明该酶在木聚糖或含木聚糖多糖的单糖化过程可能发挥重要作用。     

半理性设计进化土曲霉来源的ω-转氨酶AtTA热稳定性

转氨酶(ω-transaminase,ω-TA)作为一种天然的生物催化剂,在手性胺类化合物的合成中具有较好的应用前景。但ω-TA在催化非天然底物的反应过程中存在稳定性差、活性低的缺陷,大大限制了ω-TA的应用。为改善此缺陷,针对来源于土曲霉(Aspergillus terreus)的(R)-ω-TA(At TA),采用基于分子动力学模拟的计算机辅助设计与随机突变、组合突变相结合的策略进行酶的热稳定性改造,获得了热稳定性与活性同步提高的最佳突变酶At TA-E104D/A246V/R266Q (M3)。与At TA野生酶(wild-type, WT)相比,M3的半衰期t_1/2 (35℃)由17.8 min提升至102.7 min,提升了4.8倍,半失活温度T₅₀¹⁰比WT (38.1℃)提高2.2℃。最佳突变酶M3对丙酮酸和1-(R)-苯乙胺的催化效率分别是野生酶的1.59倍和1.56倍。分子动力学模拟与分子对接结果表明,分子内氢键与疏水相互作用的增加所导致α-螺旋的加固稳定是酶热稳定性提升的主要原因;底物分子与结合口袋氨...     

链霉菌GXT6 β-葡萄糖苷酶的酶学性质及葡萄糖耐受性分子改造

【目的】从经过全基因组测序的链霉菌GXT6中克隆、表达一个编码糖基水解酶家族3的新β-葡萄糖苷酶基因,研究重组酶的酶学性质并进行相关葡萄糖耐受性的氨基酸残基的分子改造,提高其对葡萄糖的耐受性。【方法】根据链霉菌GXT6的全基因测序结果,对其中一个注释为糖基水解酶的基因设计引物,PCR扩增目的基因,以p SE380为表达载体构建重组质粒,转化至大肠杆菌中诱导表达;采用镍亲和层析技术纯化重组蛋白质,对目的蛋白质进行酶学性质研究;采用定点饱和突变的方法对重组酶进行相关氨基酸残基的分子改造。【结果】从链霉菌GXT6中克隆到一个编码糖基水解酶家族3的新β-葡萄糖苷酶基因,并在大肠杆菌中表达。酶学性质研究结果表明该β-葡萄糖苷酶的最适温度为40°C,最适p H为6.0,Km值为(0.4712±0.0180) mmol/L,Vmax值为(128.000±1.741)μmol/(min·mg),葡萄糖抑制常数Ki值为(1.8880±0.1307)mmol/L。该BGL3-GXT6能够水解黄豆苷、染料木苷、甜茶苷、虎杖苷、淫羊藿苷。还对BGL3-GXT6中与葡萄糖耐受性可能相关的氨基酸残基位点81-Trp和233-Trp进行了定点饱和突变,获得了25个具有酶活的突变酶并对其进行酶学性质研究。其中W233位点饱和突变后获得的突变酶的Km和葡萄糖抑制常数Ki值与重组酶BGL3-GXT6相比均发生明显变化,葡萄糖耐受性有不同程度的提高,最高的提高了209倍。【结论】本研究获得的BGL3-GXT6对天然底物甜茶苷、黄豆苷、染料木苷、虎杖苷和淫羊藿苷具有水解功能,这些特性表明该β-葡萄糖苷酶在理论研究及在工业中有一定的应用价值。     

温度对温带和亚热带森林土壤有机碳矿化速率及酶动力学参数的影响

研究了温度对长白山阔叶红松林、鼎湖山常绿阔叶林2个不同纬度的森林土壤有机碳矿化速率和酶动力学参数的影响.结果表明:土壤有机碳矿化速率(C_min)随着温度的增加而增加,长白山土壤C_min及其温度敏感性(Q_10(Cmin))显著高于鼎湖山土壤.长白山土壤β-1,4-葡萄糖苷酶(βG)和β-1,4-N-乙酰葡糖氨糖苷酶(NAG)的酶动力学参数潜在最大反应速率(V_max)和半饱和常数(K_m)高于鼎湖山土壤,但鼎湖山土壤的催化效率(V_max/K_m)高于长白山土壤,表明随着温度的升高,土壤βG和NAG的V_max和V_max/K_m增加,K_m降低,即酶与底物的结合程度增加.鼎湖山土壤βG的Q_10(Vmax)、Q_10(Km)高于长白山土壤,这与土壤Q_10(Cmin)结果不一致.增温对长白山和鼎湖山森林土壤有机碳矿化及酶动力学参数的影响机制不同,在土壤生物化学过程对增温响应的模型中应区别考虑.     

Cooperativity in the two-domain arginine kinase from the sea anemone Anthopleura japonicus

cDNAs of the two-domain arginine kinase (AK) (contiguous dimer; denoted by 2D/WT) and its separated domains 1 and 2 (denoted by D1/WT and D2/WT) from the sea anemone Anthopleura japonicus, were cloned into the plasmid pMAL, and recombinant enzymes were expressed in E. coli as MBP fusion proteins. The kinetic parameters kcat, Ka and Kia, were determined for all three AKs. All three enzymes showed distinct AK activity, and had high affinity for arginine (Ka Arg=0.25-0.48 mM). The catalytic efficiency, calculated by kcat/Ka ArgKia ATP, of the 2D/WT enzyme (182 mM(-2)s(-1), the value for one active 40 kDa domain) was two- to three-times higher than values for either D1/WT or D2/WT (80.2 and 86.4mM(-2)s(-1), respectively), suggesting the presence of domain-domain interactions (cooperativity) in the contiguous dimer. The Kia/Ka values of the three enzymes ranged from 0.88 to 1.32, indicating that there is no strong synergism in substrate binding, as seen in typical AKs. Asp62 and Arg193, which are conserved in most AKs and play a key role in stabilizing the substrate-bound structure, are also conserved in the two domains of Anthopleura AK. We replaced Asp62 in D2/WT with Glu or Gly. The catalytic efficiency and Kia/Ka for the D62E mutant were comparable to those of D2/WT, but catalytic efficiency for the D62G mutant was decreased to 13% of that of the D2/WT with a significantly increased value of Kia/Ka (1.92), indicating that Asp62 plays an important role in the expression of AK activity.     

α-Chymotrypsin shows higher activity in water as well as organic solvents after three phase partitioning

Alpha-Chymotrypsin was found to show a 119% increase in activity after three phase partitioning. The k_cat/K_m of the partitioned enzyme (TPP-C) for hydrolysis of Bz-Tyr-OEt in aqueous medium at 25°C was found to be 48.3×10⁴ mM^-1 min^-1 as compared to the corresponding value of 17.7×10⁴ mM^-1 min^-1 for the untreated control (C). The λ_max of the fluorescence emission spectrum of TPP-C showed 178% increase in the quantum yield when compared to C. TPP-C showed a 2.94 and 3.58 fold increase (as compared to C) in initial rates for formation of the ester Ac-Phe-OEt (from Ac-Phe and ethanol) in low water containing toluene and n-octane, respectively. It was found that TPP-C also showed the phenomenon of pH memory. At 5% (v v^-1) water (in t-amyl alcohol), while no esterification was observed with C, TPP-C still showed significant level of esterification activity.     

Side-chain cleavage of cholesterol esters by human cytochrome P-450scc

In order to define the substrate binding site of human cytochrome P-450_scc in the vicinity of the 3β-hydroxyl group of cholesterol, we have tested the ability of the cytochrome to cleave the side chain of a range of cholesterol esters and cholesterol methyl ether. Using a Tween-20 detergent reconstituted system we found that cholesterol sulphate could undergo side-chain cleavage with the same turnover number (k_cat) as that for cholesterol, but with a higher K_m. Cholesterol methyl ether underwent side-chain cleavage to pregnenolone methyl ether with k_cat and K_m values 30% of those for cholesterol. Cholesterol fatty acid esters with acyl chain lengths of up to four carbons were able to undergo side-chain cleavage with K_m values similar to those for cholesterol, but k_cat values only 12–23% of those for cholesterol. Turnover numbers decreased as the acyl group length increased beyond four carbons, although some activity was still detected with cholesterol palmitate as substrate. Analysis of bovine cytochrome P-450_scc revealed that it could also cleave the side chain of acyl and sulphate esters of cholesterol. This study indicates that the substrate binding site of cytochrome P-450_scc in the vicinity of the 3β-hydroxyl group is larger than previously believed.     

Targeting of Splice Variants of Human Cytochrome P450 2C8 (CYP2C8) to Mitochondria and Their Role in Arachidonic Acid Metabolism and Respiratory Dysfunction

In this study, we found that the full-length CYP2C8 (WT CYP2C8) and N-terminal truncated splice variant 3 (∼44-kDa mass) are localized in mitochondria in addition to the endoplasmic reticulum. Analysis of human livers showed that the mitochondrial levels of these two forms varied markedly. Molecular modeling based on the x-ray crystal structure coordinates of CYP2D6 and CYP2C8 showed that despite lacking the N-terminal 102 residues variant 3 possessed nearly complete substrate binding and heme binding pockets. Stable expression of cDNAs in HepG2 cells showed that the WT protein is mostly targeted to the endoplasmic reticulum and at low levels to mitochondria, whereas variant 3 is primarily targeted to mitochondria and at low levels to the endoplasmic reticulum. Enzyme reconstitution experiments showed that both microsomal and mitochondrial WT CYP2C8 efficiently catalyzed paclitaxel 6-hydroxylation. However, mitochondrial variant 3 was unable to catalyze this reaction possibly because of its inability to stabilize the large 854-Da substrate. Conversely, mitochondrial variant 3 catalyzed the metabolism of arachidonic acid into 8,9-, 11,12-, and 14,15-epoxyeicosatrienoic acids and 20-hydroxyeicosatetraenoic acid when reconstituted with adrenodoxin and adrenodoxin reductase. HepG2 cells stably expressing variant 3 generated higher levels of reactive oxygen species and showed a higher level of mitochondrial respiratory dysfunction. This study suggests that mitochondrially targeted variant 3 CYP2C8 may contribute to oxidative stress in various tissues.     

Effect of Ischemia on Heart Submitochondrial Superoxide Production

NADH-dependent formation of superoxide anions (O^-₂) by rabbit cardiac submitochondrial particles (SMP) was stimulated after exposure of the isolated heart to 90 min of ischemic perfusion. This effect was more evident in the rotenone-inhibited region of the respiratory electron chain in comparison to the antimycin-inhibited region. The kinetic study of the NADH-dependent reaction showed that at the level of the rotenone-inhibited region, ischemia reduced K_m value for NADH, differently from the antimycin-inhibited region where the kinetic constants remain unchanged. No significant changes of the V_max values were observed in both SMP-producing O^-₂ sites.

The ischemic perfusions also produced a reduction of mitochondrial function, particularly evident when glutamate as substrate was studied.     

Phosphorylation of Delta Sleep-Inducing Peptide (DSIP) by casein kinase II in vitro

A phosphorylated analogue of DSIP at Ser⁷ has been shown to exist endogenously by immunochemical studies. An enzyme which could phosphorylate DSIP has not yet been identified. In the present study, we examined DSIP as a substrate for in vitro phosphorylation by casein kinase II. DSIP was phosphorylated by the enzyme with apparent K_m and V_max values of 20 mM and 90.9 nmol/min/mg protein, respectively. Both ATP and GTP were utilized as phosphoryl donors. Phosphorylation of DSIP was inhibited by heparin and enhanced by spermine. These results demonstrate that DSIP can serve as a possible substrate for casein kinase II in vitro.     

The G82S polymorphism promotes glycosylation of the receptor for advanced glycation end products (RAGE) at asparagine 81: comparison of wild-type rage with the G82S polymorphic variant

Interaction between the receptor for advanced glycation end products (RAGE) and its ligands amplifies the proinflammatory response. N-Linked glycosylation of RAGE plays an important role in the regulation of ligand binding. Two potential sites for N-linked glycosylation, at Asn(25) and Asn(81), are implicated, one of which is potentially influenced by a naturally occurring polymorphism that substitutes Gly(82) with Ser. This G82S polymorphic RAGE variant displays increased ligand binding and downstream signaling. We hypothesized that the G82S polymorphism affects RAGE glycosylation and thereby affects ligand binding. WT or various mutant forms of RAGE protein, including N25Q, N81Q, N25Q/G82S, and N25Q/N81Q, were produced by transfecting HEK293 cells. The glycosylation patterns of expressed proteins were compared. Enzymatic deglycosylation showed that WT RAGE and the G82S polymorphic variant are glycosylated to the same extent. Our data also revealed N-linked glycosylation of N25Q and N81Q mutants, suggesting that both Asn(25) and Asn(81) can be utilized for N-linked glycosylation. Using mass spectrometry analysis, we found that Asn(81) may or may not be glycosylated in WT RAGE, whereas in G82S RAGE, Asn(81) is always glycosylated. Furthermore, RAGE binding to S100B ligand is affected by Asn(81) glycosylation, with consequences for NF-κB activation. Therefore, the G82S polymorphism promotes N-linked glycosylation of Asn(81), which has implications for the structure of the ligand binding region of RAGE and might explain the enhanced function associated with the G82S polymorphic RAGE variant.     

A kinetic study of almond-β-glucosidase catalysed synthesis of hexyl-glycosides in low aqueous media: Influence of glycosyl donor and water activity

A variety of alkyl and aryl glycosides were investigated as substrates for almond β-glucosidase catalysed synthesis of hexyl-β- -glycosides in low aqueous hexanol media. The rate-limiting step in the organic media was determined to be the glycosylation of the enzyme. The kinetic constants V_max, K_m (glycosyl donor) and V_max/K_m were all influenced by the water activity and they all increased in value with increasing water activity. The increase in V_max/K_m was mainly determined by the increase in V_max and a plot of log(V_max/K_m) versus water activity resulted in a straight line with similar slopes for all glycosides but with different absolute values and thus the most reactive substrate p-nitrophenyl glucoside was the best one in the entire water activity range studied (0.53–0.96). The preference for the two competing acceptors, hexanol and water, was not affected by the aglycon part of the glucoside. Surprisingly, the ratio between trans glycosylation and hydrolysis increased with increasing water activity. A decrease in water activity caused an increase in equilibrium yield of hexyl glycoside, as expected, but was not beneficial for the kinetically controlled yield.     

In vivo and in vitro characterization of TEV protease mutants

Tobacco etch virus protease (TEVp) is frequently applied in the cleavage of fusion protein. However, production of TEV protease in Escherichia coli is hampered by low yield and poor solubility, and auto-cleavage of wild type TEVp gives rise to the loss-of-function. Previously it was reported that TEVp S219V displayed more stability, and TEVp variant containing T17S/N68D/I77V and double mutant L56V/S135G resulted in the enhanced production and solubility, respectively. Here, we introduced T17S/N68D/I77V in TEVp S219V to generate TEVpM1 and combined five amino acid mutations (T17S/L56V/N68D/I77V/S135G) in TEVp S219V to create TEVpM2. Among TEVp S219V, and two constructed variants, TEVpM2 displayed highest solubility and catalytic activity in vivo, using EmGFP as the solubility reporter, and the designed fusion protein as in vivo substrate containing an N-terminal hexahistidine tagged GST, a peptide sequence for thrombin and TEV cut and E. coli diaminopropionate ammonia-lyase. The purified TEVp mutants fused with double hexahistidine-tag at N and C terminus showed highest yield, solubility and cleavage efficiency. Mutations of five amino acid residues in TEVpM2 slightly altered protein secondary structure conformed by circular dichroism assay.